Result of FASTA (omim) for
pF1KE0777
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0777, 331 aa
1>>>pF1KE0777 331 - 331 aa - 331 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5227+/-0.000458; mu= 6.4405+/- 0.028
mean_var=210.6820+/-43.751, 0's: 0 Z-trim(116.9): 178 B-trim: 235 in 2/51
Lambda= 0.088361
statistics sampled from 28314 (28511) to 28314 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.334), width: 16
Scan time: 7.790
The best scores are: opt bits E(85289)
NP_001309368 (OMIM: 602324) heterogeneous nuclear ( 331) 2362 313.9 3.1e-85
NP_067676 (OMIM: 602324) heterogeneous nuclear rib ( 331) 2362 313.9 3.1e-85
NP_001309367 (OMIM: 602324) heterogeneous nuclear ( 331) 2362 313.9 3.1e-85
NP_001309369 (OMIM: 602324) heterogeneous nuclear ( 331) 2362 313.9 3.1e-85
NP_001309370 (OMIM: 602324) heterogeneous nuclear ( 331) 2362 313.9 3.1e-85
NP_001309371 (OMIM: 602324) heterogeneous nuclear ( 340) 1501 204.1 3.4e-52
NP_001309372 (OMIM: 602324) heterogeneous nuclear ( 340) 1501 204.1 3.4e-52
NP_001309366 (OMIM: 602324) heterogeneous nuclear ( 346) 1490 202.7 9.1e-52
NP_001309363 (OMIM: 602324) heterogeneous nuclear ( 346) 1490 202.7 9.1e-52
XP_016871657 (OMIM: 602324) PREDICTED: heterogeneo ( 346) 1490 202.7 9.1e-52
NP_036339 (OMIM: 602324) heterogeneous nuclear rib ( 346) 1490 202.7 9.1e-52
NP_001309365 (OMIM: 602324) heterogeneous nuclear ( 346) 1490 202.7 9.1e-52
NP_001309376 (OMIM: 602324) heterogeneous nuclear ( 215) 1473 200.3 3e-51
NP_001309374 (OMIM: 602324) heterogeneous nuclear ( 215) 1473 200.3 3e-51
NP_001309377 (OMIM: 602324) heterogeneous nuclear ( 215) 1473 200.3 3e-51
NP_001309375 (OMIM: 602324) heterogeneous nuclear ( 215) 1473 200.3 3e-51
NP_001309378 (OMIM: 602324) heterogeneous nuclear ( 215) 1473 200.3 3e-51
XP_016871658 (OMIM: 602324) PREDICTED: heterogeneo ( 215) 1473 200.3 3e-51
NP_001309379 (OMIM: 602324) heterogeneous nuclear ( 209) 1467 199.6 5e-51
NP_001309373 (OMIM: 602324) heterogeneous nuclear ( 238) 1452 197.7 2e-50
XP_011538044 (OMIM: 602324) PREDICTED: heterogeneo ( 238) 1452 197.7 2e-50
NP_001309381 (OMIM: 602324) heterogeneous nuclear ( 177) 1272 174.6 1.4e-43
NP_001309380 (OMIM: 602324) heterogeneous nuclear ( 177) 1272 174.6 1.4e-43
NP_001309382 (OMIM: 602324) heterogeneous nuclear ( 177) 1272 174.6 1.4e-43
XP_016864903 (OMIM: 601035) PREDICTED: heterogeneo ( 452) 812 116.4 1.1e-25
XP_006714925 (OMIM: 601035) PREDICTED: heterogeneo ( 452) 812 116.4 1.1e-25
XP_016864908 (OMIM: 601035) PREDICTED: heterogeneo ( 429) 802 115.1 2.7e-25
XP_006714926 (OMIM: 601035) PREDICTED: heterogeneo ( 429) 802 115.1 2.7e-25
XP_011532849 (OMIM: 601035) PREDICTED: heterogeneo ( 462) 776 111.9 2.8e-24
XP_016864907 (OMIM: 601035) PREDICTED: heterogeneo ( 439) 766 110.6 6.5e-24
XP_016864909 (OMIM: 601035) PREDICTED: heterogeneo ( 251) 760 109.5 7.6e-24
NP_062543 (OMIM: 300610,300986) heterogeneous nucl ( 449) 762 110.1 9.4e-24
NP_001027565 (OMIM: 300610,300986) heterogeneous n ( 449) 762 110.1 9.4e-24
NP_001244222 (OMIM: 601035) heterogeneous nuclear ( 449) 756 109.3 1.6e-23
XP_016864906 (OMIM: 601035) PREDICTED: heterogeneo ( 449) 756 109.3 1.6e-23
XP_016864905 (OMIM: 601035) PREDICTED: heterogeneo ( 449) 756 109.3 1.6e-23
XP_016864904 (OMIM: 601035) PREDICTED: heterogeneo ( 449) 756 109.3 1.6e-23
NP_005511 (OMIM: 601035) heterogeneous nuclear rib ( 449) 756 109.3 1.6e-23
XP_011532844 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 756 109.3 1.7e-23
XP_005265952 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 756 109.3 1.7e-23
XP_005265953 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 756 109.3 1.7e-23
XP_011532847 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 756 109.3 1.7e-23
XP_011532848 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 756 109.3 1.7e-23
XP_011532846 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 756 109.3 1.7e-23
XP_016864914 (OMIM: 601035) PREDICTED: heterogeneo ( 228) 711 103.2 5.4e-22
XP_016864913 (OMIM: 601035) PREDICTED: heterogeneo ( 266) 711 103.3 6e-22
XP_005265959 (OMIM: 601035) PREDICTED: heterogeneo ( 271) 699 101.8 1.8e-21
XP_005265958 (OMIM: 601035) PREDICTED: heterogeneo ( 271) 699 101.8 1.8e-21
XP_016864911 (OMIM: 601035) PREDICTED: heterogeneo ( 248) 689 100.5 4e-21
XP_016864910 (OMIM: 601035) PREDICTED: heterogeneo ( 248) 689 100.5 4e-21
>>NP_001309368 (OMIM: 602324) heterogeneous nuclear ribo (331 aa)
initn: 2362 init1: 2362 opt: 2362 Z-score: 1651.3 bits: 313.9 E(85289): 3.1e-85
Smith-Waterman score: 2362; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)
10 20 30 40 50 60
pF1KE0 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RGGYYGAGRGSYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGGYYGAGRGSYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 FVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 NNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTP
250 260 270 280 290 300
310 320 330
pF1KE0 DGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
:::::::::::::::::::::::::::::::
NP_001 DGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
310 320 330
>>NP_067676 (OMIM: 602324) heterogeneous nuclear ribonuc (331 aa)
initn: 2362 init1: 2362 opt: 2362 Z-score: 1651.3 bits: 313.9 E(85289): 3.1e-85
Smith-Waterman score: 2362; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)
10 20 30 40 50 60
pF1KE0 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RGGYYGAGRGSYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 RGGYYGAGRGSYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 FVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 FVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 NNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 NNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTP
250 260 270 280 290 300
310 320 330
pF1KE0 DGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
:::::::::::::::::::::::::::::::
NP_067 DGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
310 320 330
>>NP_001309367 (OMIM: 602324) heterogeneous nuclear ribo (331 aa)
initn: 2362 init1: 2362 opt: 2362 Z-score: 1651.3 bits: 313.9 E(85289): 3.1e-85
Smith-Waterman score: 2362; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)
10 20 30 40 50 60
pF1KE0 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RGGYYGAGRGSYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGGYYGAGRGSYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 FVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 NNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTP
250 260 270 280 290 300
310 320 330
pF1KE0 DGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
:::::::::::::::::::::::::::::::
NP_001 DGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
310 320 330
>>NP_001309369 (OMIM: 602324) heterogeneous nuclear ribo (331 aa)
initn: 2362 init1: 2362 opt: 2362 Z-score: 1651.3 bits: 313.9 E(85289): 3.1e-85
Smith-Waterman score: 2362; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)
10 20 30 40 50 60
pF1KE0 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RGGYYGAGRGSYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGGYYGAGRGSYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 FVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 NNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTP
250 260 270 280 290 300
310 320 330
pF1KE0 DGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
:::::::::::::::::::::::::::::::
NP_001 DGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
310 320 330
>>NP_001309370 (OMIM: 602324) heterogeneous nuclear ribo (331 aa)
initn: 2362 init1: 2362 opt: 2362 Z-score: 1651.3 bits: 313.9 E(85289): 3.1e-85
Smith-Waterman score: 2362; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)
10 20 30 40 50 60
pF1KE0 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RGGYYGAGRGSYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGGYYGAGRGSYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 FVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 NNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTP
250 260 270 280 290 300
310 320 330
pF1KE0 DGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
:::::::::::::::::::::::::::::::
NP_001 DGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
310 320 330
>>NP_001309371 (OMIM: 602324) heterogeneous nuclear ribo (340 aa)
initn: 1467 init1: 1467 opt: 1501 Z-score: 1058.0 bits: 204.1 E(85289): 3.4e-52
Smith-Waterman score: 2334; 97.4% identity (97.4% similar) in 340 aa overlap (1-331:1-340)
10 20 30 40 50 60
pF1KE0 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 RGGYYGAGRGS---------YGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGD
::::::::::: ::::::::::::::::::::::::::::::::::::::::
NP_001 RGGYYGAGRGSMYDRMRRGGYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGD
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 ASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHED
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE0 AVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGN
250 260 270 280 290 300
300 310 320 330
pF1KE0 NYSGGYGTPDGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
::::::::::::::::::::::::::::::::::::::::
NP_001 NYSGGYGTPDGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
310 320 330 340
>>NP_001309372 (OMIM: 602324) heterogeneous nuclear ribo (340 aa)
initn: 1467 init1: 1467 opt: 1501 Z-score: 1058.0 bits: 204.1 E(85289): 3.4e-52
Smith-Waterman score: 2334; 97.4% identity (97.4% similar) in 340 aa overlap (1-331:1-340)
10 20 30 40 50 60
pF1KE0 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 RGGYYGAGRGS---------YGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGD
::::::::::: ::::::::::::::::::::::::::::::::::::::::
NP_001 RGGYYGAGRGSMYDRMRRGGYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGD
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 ASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHED
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE0 AVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGN
250 260 270 280 290 300
300 310 320 330
pF1KE0 NYSGGYGTPDGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
::::::::::::::::::::::::::::::::::::::::
NP_001 NYSGGYGTPDGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
310 320 330 340
>>NP_001309366 (OMIM: 602324) heterogeneous nuclear ribo (346 aa)
initn: 1460 init1: 1460 opt: 1490 Z-score: 1050.3 bits: 202.7 E(85289): 9.1e-52
Smith-Waterman score: 2322; 95.7% identity (95.7% similar) in 346 aa overlap (1-331:1-346)
10 20 30 40 50 60
pF1KE0 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
70 80 90 100 110 120
130 140 150 160
pF1KE0 RGGYYGAGRGS---------------YGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHG
::::::::::: ::::::::::::::::::::::::::::::::::
NP_001 RGGYYGAGRGSMYDRMRRGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHG
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE0 YGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVE
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE0 FVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVG
250 260 270 280 290 300
290 300 310 320 330
pF1KE0 RMGMGNNYSGGYGTPDGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RMGMGNNYSGGYGTPDGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
310 320 330 340
>>NP_001309363 (OMIM: 602324) heterogeneous nuclear ribo (346 aa)
initn: 1460 init1: 1460 opt: 1490 Z-score: 1050.3 bits: 202.7 E(85289): 9.1e-52
Smith-Waterman score: 2322; 95.7% identity (95.7% similar) in 346 aa overlap (1-331:1-346)
10 20 30 40 50 60
pF1KE0 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
70 80 90 100 110 120
130 140 150 160
pF1KE0 RGGYYGAGRGS---------------YGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHG
::::::::::: ::::::::::::::::::::::::::::::::::
NP_001 RGGYYGAGRGSMYDRMRRGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHG
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE0 YGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVE
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE0 FVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVG
250 260 270 280 290 300
290 300 310 320 330
pF1KE0 RMGMGNNYSGGYGTPDGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RMGMGNNYSGGYGTPDGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
310 320 330 340
>>XP_016871657 (OMIM: 602324) PREDICTED: heterogeneous n (346 aa)
initn: 1460 init1: 1460 opt: 1490 Z-score: 1050.3 bits: 202.7 E(85289): 9.1e-52
Smith-Waterman score: 2322; 95.7% identity (95.7% similar) in 346 aa overlap (1-331:1-346)
10 20 30 40 50 60
pF1KE0 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGG
70 80 90 100 110 120
130 140 150 160
pF1KE0 RGGYYGAGRGS---------------YGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHG
::::::::::: ::::::::::::::::::::::::::::::::::
XP_016 RGGYYGAGRGSMYDRMRRGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHG
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE0 YGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVE
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE0 FVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVG
250 260 270 280 290 300
290 300 310 320 330
pF1KE0 RMGMGNNYSGGYGTPDGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RMGMGNNYSGGYGTPDGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY
310 320 330 340
331 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 03:07:07 2016 done: Sat Nov 5 03:07:08 2016
Total Scan time: 7.790 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]