FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0779, 348 aa
  1>>>pF1KE0779 348 - 348 aa - 348 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1456+/-0.000926; mu= 4.2887+/- 0.054
 mean_var=284.7071+/-63.747, 0's: 0 Z-trim(114.1): 400  B-trim: 0 in 0/50
 Lambda= 0.076011
 statistics sampled from 14186 (14717) to 14186 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.452), width:  16
 Scan time:  3.230

The best scores are:                                      opt bits E(32554)
CCDS42631.1 SBK2 gene_id:646643|Hs108|chr19        ( 348) 2363 272.3 4.2e-73
CCDS74457.1 SBK3 gene_id:100130827|Hs108|chr19     ( 359)  771 97.7 1.5e-20
CCDS32416.1 SBK1 gene_id:388228|Hs108|chr16        ( 424)  734 93.8 2.9e-19


>>CCDS42631.1 SBK2 gene_id:646643|Hs108|chr19             (348 aa)
 initn: 2363 init1: 2363 opt: 2363  Z-score: 1425.8  bits: 272.3 E(32554): 4.2e-73
Smith-Waterman score: 2363; 99.4% identity (99.4% similar) in 348 aa overlap (1-348:1-348)

               10        20        30        40        50        60
pF1KE0 MPGKQSEEGPAEAGASEDSEEEGLGGLTLEELQQGQEAARALEDMMTLSAQTLVRAEVDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MPGKQSEEGPAEAGASEDSEEEGLGGLTLEELQQGQEAARALEDMMTLSAQTLVRAEVDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LYEEVRPLGQGRYGRVLLVTHRQKGTPLALKQLPKPRTSLRGFLYEFCVGLSLGAHSAIV
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LYEEVRPLGQGCYGRVLLVTHRQKGTPLALKQLPKPRTSLRGFLYEFCVGLSLGAHSAIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TAYGIGIESAHSYSFLTEPVLHGDLMAFIQPKVGLPQPAVHRCAAQLASALEYIHARGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TAYGIGIESAHSYSFLTEPVLHGDLMAFIQPKVGLPQPAVHRCAAQLASALEYIHARGLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 YRDLKPENVLVCDPACRRFKLTDFGHTRPRGTLLRLAGPPIPYTAPELCAPPPLPEGLPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YRDLKPENVLVCDPACRRFKLTDFGHTRPRGTLLRLAGPPIPYTAPELCAPPPLPEGLPI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 QPALDAWALGVLLFCLLTGYFPWDRPLAEADPFYEDFLIWQASGQPRDRPQPWFGLAPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
CCDS42 QPALDAWALGVLLFCLLTGYFPWDRPLAEADPFYEDFLIWQASGQPRDRPQPWFGLAAAA
              250       260       270       280       290       300

              310       320       330       340        
pF1KE0 DALLRGLLDPHPRRRSAVIAIREHLGRPWRQREGEAEAVGAVEEEAGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DALLRGLLDPHPRRRSAVIAIREHLGRPWRQREGEAEAVGAVEEEAGQ
              310       320       330       340        

>>CCDS74457.1 SBK3 gene_id:100130827|Hs108|chr19          (359 aa)
 initn: 746 init1: 284 opt: 771  Z-score: 482.2  bits: 97.7 E(32554): 1.5e-20
Smith-Waterman score: 771; 42.0% identity (65.7% similar) in 324 aa overlap (28-345:8-327)

               10        20        30        40        50          
pF1KE0 MPGKQSEEGPAEAGASEDSEEEGLGGLTLEELQQGQEAARALEDMMTLSAQ--TLVRAEV
                                  : :. .  ...: ::. .. :...  : ::.  
CCDS74                     MERRASETPEDGDPEEDTATALQRLVELTTSRVTPVRSLR
                                   10        20        30        40

       60        70        80        90       100       110        
pF1KE0 DELYEEVRPLGQGRYGRVLLVTHRQKGTPLALKQLPKPRTSLRGFLYEFCVGLSLGAHSA
       :. :. .: ::.: ::::::.  .: :  .::: : .  .    :: :::::  ..:: .
CCDS74 DQ-YHLIRKLGSGSYGRVLLAQPHQGGPAVALKLLRRDLVLRSTFLREFCVGRCVSAHPG
                50        60        70        80        90         

      120       130       140       150       160       170        
pF1KE0 IVTAYGIGIESAHSYSFLTEPVLHGDLMAFIQPKVGLPQPAVHRCAAQLASALEYIHARG
       .. . .  ... . ..:  : .  ::: ...: . :::.  :.: .::::.::...:.::
CCDS74 LLQTLAGPLQTPRYFAFAQEYAPCGDLSGMLQER-GLPELLVKRVVAQLAGALDFLHSRG
     100       110       120       130        140       150        

      180       190       200       210       220       230        
pF1KE0 LVYRDLKPENVLVCDPACRRFKLTDFGHTRPRGTLLRLAGPPIPYTAPELCAPPPLPEGL
       ::. :.::.:::: ::.: :  : :.: :::.:.       :.: . ::::   : :. :
CCDS74 LVHADVKPDNVLVFDPVCSRVALGDLGLTRPEGSPTPAPPVPLPTAPPELCLLLP-PDTL
      160       170       180       190       200       210        

      240       250       260       270       280        290       
pF1KE0 PIQPALDAWALGVLLFCLLTGYFPWDRPLAEADPFYEDFLIWQASG-QPRDRPQPWFGLA
       :..::.:.:.:::::::  :. ::::  ::  .: .: :  : ..  :: . : ::  .:
CCDS74 PLRPAVDSWGLGVLLFCAATACFPWDVALAP-NPEFEAFAGWVTTKPQPPQPPPPWDQFA
       220       230       240        250       260       270      

       300       310       320       330          340              
pF1KE0 PAADALLRGLLDPHPRRRSAVIAIREHLGRPWR---QREGEAEAVGAVEEEAGQ      
       : : :::.::::  :. ::  .:. . ::  :    .::: .   .::  :         
CCDS74 PPALALLQGLLDLDPETRSPPLAVLDFLGDDWGLQGNREGPGVLGSAVSYEDREEGGSSL
        280       290       300       310       320       330      

CCDS74 EEWTDEGDDSKSGGRTGTDGGAP
        340       350         

>>CCDS32416.1 SBK1 gene_id:388228|Hs108|chr16             (424 aa)
 initn: 713 init1: 539 opt: 734  Z-score: 459.5  bits: 93.8 E(32554): 2.9e-19
Smith-Waterman score: 734; 42.9% identity (69.6% similar) in 273 aa overlap (43-315:34-303)

             20        30        40        50        60        70  
pF1KE0 AGASEDSEEEGLGGLTLEELQQGQEAARALEDMMTLSAQTLVRAEVDELYEEVRPLGQGR
                                     :::..:. .::. ..: . :: :: ::.: 
CCDS32 GCPEPEPPRSLTCCGPGTAPGPGAGVPLLTEDMQALTLRTLAASDVTKHYELVRELGKGT
            10        20        30        40        50        60   

             80        90       100       110       120       130  
pF1KE0 YGRVLLVTHRQKGTPLALKQLPKPRTSLRGFLYEFCVGLSLGAHSAIVTAYGIGIESAHS
       ::.: ::...  :: .::: . : .:.:..:: :  .  ::..   :. .. . .:.   
CCDS32 YGKVDLVVYKGTGTKMALKFVNKSKTKLKNFLREVSITNSLSSSPFIIKVFDVVFETEDC
            70        80        90       100       110       120   

            140       150       160       170       180       190  
pF1KE0 YSFLTEPVLHGDLMAFIQPKVGLPQPAVHRCAAQLASALEYIHARGLVYRDLKPENVLVC
       : :  : .  :::. .: :.::::. .:.::. ::. ::...:.: ::.::.::::::. 
CCDS32 YVFAQEYAPAGDLFDIIPPQVGLPEDTVKRCVQQLGLALDFMHGRQLVHRDIKPENVLLF
           130       140       150       160       170       180   

            200       210       220       230       240       250  
pF1KE0 DPACRRFKLTDFGHTRPRGTLLRLAGPPIPYTAPELCAPPPLPEGLPIQPALDAWALGVL
       :  ::: ::.::: ::  :  .. ..  :::::::.:      .:: .. ..:.::.:::
CCDS32 DRECRRVKLADFGMTRRVGCRVKRVSGTIPYTAPEVCQAGR-ADGLAVDTGVDVWAFGVL
           190       200       210       220        230       240  

            260       270       280       290       300       310  
pF1KE0 LFCLLTGYFPWDRPLAEADPFYEDFLIWQASGQPRDRPQPWFGLAPAADALLRGLLDPHP
       .::.::: :::.   . :: :.:.:. :: .  :   :. :  ..  :  ... ::  .:
CCDS32 IFCVLTGNFPWE-AASGADAFFEEFVRWQRGRLP-GLPSQWRRFTEPALRMFQRLLALEP
            250        260       270        280       290       300

            320       330       340                                
pF1KE0 RRRSAVIAIREHLGRPWRQREGEAEAVGAVEEEAGQ                        
       .::                                                         
CCDS32 ERRGPAKEVFRFLKHELTSELRRRPSHRARKPPGDRPPAAGPLRLEAPGPLKRTVLTESG
              310       320       330       340       350       360




348 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:04:36 2016 done: Sat Nov  5 18:04:37 2016
 Total Scan time:  3.230 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]