FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0781, 350 aa
  1>>>pF1KE0781 350 - 350 aa - 350 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2055+/-0.000927; mu= 11.2274+/- 0.055
 mean_var=80.3515+/-15.598, 0's: 0 Z-trim(105.6): 78  B-trim: 54 in 1/51
 Lambda= 0.143079
 statistics sampled from 8429 (8509) to 8429 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.261), width:  16
 Scan time:  2.650

The best scores are:                                      opt bits E(32554)
CCDS1887.1 PLEK gene_id:5341|Hs108|chr2            ( 350) 2367 498.4 3.6e-141
CCDS9782.1 PLEK2 gene_id:26499|Hs108|chr14         ( 353)  859 187.2 1.8e-47


>>CCDS1887.1 PLEK gene_id:5341|Hs108|chr2                 (350 aa)
 initn: 2367 init1: 2367 opt: 2367  Z-score: 2648.0  bits: 498.4 E(32554): 3.6e-141
Smith-Waterman score: 2367; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:1-350)

               10        20        30        40        50        60
pF1KE0 MEPKRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MEPKRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDIKKAIKCIEGGQKFARKSTRRSIRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 DFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDIKKAIKCIEGGQKFARKSTRRSIRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PETIDLGALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSNQSVRNRQEGLMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 PETIDLGALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSNQSVRNRQEGLMI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 ASSLLNEGYLQPAGDMSKSAVDGTAENPFLDNPDAFYYFPDSGFFCEENSSDDDVILKEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 ASSLLNEGYLQPAGDMSKSAVDGTAENPFLDNPDAFYYFPDSGFFCEENSSDDDVILKEE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 FRGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 FRGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSV
              250       260       270       280       290       300

              310       320       330       340       350
pF1KE0 ESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIRAIQMASRTGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 ESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIRAIQMASRTGK
              310       320       330       340       350

>>CCDS9782.1 PLEK2 gene_id:26499|Hs108|chr14              (353 aa)
 initn: 784 init1: 537 opt: 859  Z-score: 965.6  bits: 187.2 E(32554): 1.8e-47
Smith-Waterman score: 859; 38.8% identity (71.1% similar) in 353 aa overlap (1-343:1-350)

               10        20        30        40           50       
pF1KE0 MEPKRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSD---NSPKGMIPLKGSTLTS
       ::   ..::.:::.: . ..::  : .: .. . .:: ..    . ::: : : : :.: 
CCDS97 MEDGVLKEGFLVKRGHIVHNWKARWFILRQNTLVYYKLEGGRRVTPPKGRILLDGCTITC
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KE0 PCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDIKKAIKCIEGGQKFARKSTRRS
       :: .. .: ...:. :  . ..:..:   ::::::. .:  ::.  . :.    .: : :
CCDS97 PCLEYENRPLLIKLKTQTSTEYFLEACSREERDAWAFEITGAIHAGQPGKVQQLHSLRNS
               70        80        90       100       110       120

       120       130       140        150       160       170      
pF1KE0 IRLPETIDLGALYLSMKDTEKGIKEL-NLEKDKKIFNHCFTGNCVIDWLVSNQSVRNRQE
       ..::  :.:  .  .:.:.. ::.   :.:. .  ... : :. ..:::.::. . .: :
CCDS97 FKLPPHISLHRIVDKMHDSNTGIRSSPNMEQGST-YKKTFLGSSLVDWLISNSFTASRLE
              130       140       150        160       170         

        180       190       200        210       220       230     
pF1KE0 GLMIASSLLNEGYLQPAGDMSKSAV-DGTAENPFLDNPDAFYYFPDSGFFCEENSSDDDV
       .. .:: :..:..:.:.:  : .:. .:   . :::.  :.: : .:  . .. :  ...
CCDS97 AVTLASMLMEENFLRPVGVRSMGAIRSGDLAEQFLDDSTALYTFAES--YKKKISPKEEI
     180       190       200       210       220         230       

          240       250       260       270       280        290   
pF1KE0 ILKE-EFRGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAED-PLGAIHLR
        :.  :. :...::: : ::::.:::::::.:.::.:::.::::::.  :. :.:.. ::
CCDS97 SLSTVELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLR
       240       250       260       270       280       290       

           300         310        320       330       340       350
pF1KE0 GCVVTSVESNS--NGRKSEEE-NLFEIITADEVHYFLQAATPKERTEWIRAIQMASRTGK
       : .:...:.:.  .: :.. . :::..:: :..::..::..  ::.:::.::.       
CCDS97 GSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLT    
       300       310       320       330       340       350       




350 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 03:07:42 2016 done: Sat Nov  5 03:07:42 2016
 Total Scan time:  2.650 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]