FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0787, 353 aa
  1>>>pF1KE0787 353 - 353 aa - 353 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9834+/-0.00107; mu= 12.4772+/- 0.064
 mean_var=87.0433+/-17.138, 0's: 0 Z-trim(104.7): 75  B-trim: 0 in 0/50
 Lambda= 0.137470
 statistics sampled from 7957 (8027) to 7957 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.247), width:  16
 Scan time:  2.670

The best scores are:                                      opt bits E(32554)
CCDS9782.1 PLEK2 gene_id:26499|Hs108|chr14         ( 353) 2335 473.4 1.2e-133
CCDS1887.1 PLEK gene_id:5341|Hs108|chr2            ( 350)  859 180.7 1.6e-45


>>CCDS9782.1 PLEK2 gene_id:26499|Hs108|chr14              (353 aa)
 initn: 2335 init1: 2335 opt: 2335  Z-score: 2512.7  bits: 473.4 E(32554): 1.2e-133
Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 353 aa overlap (1-353:1-353)

               10        20        30        40        50        60
pF1KE0 MEDGVLKEGFLVKRGHIVHNWKARWFILRQNTLVYYKLEGGRRVTPPKGRILLDGCTITC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MEDGVLKEGFLVKRGHIVHNWKARWFILRQNTLVYYKLEGGRRVTPPKGRILLDGCTITC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PCLEYENRPLLIKLKTQTSTEYFLEACSREERDAWAFEITGAIHAGQPGKVQQLHSLRNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 PCLEYENRPLLIKLKTQTSTEYFLEACSREERDAWAFEITGAIHAGQPGKVQQLHSLRNS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 FKLPPHISLHRIVDKMHDSNTGIRSSPNMEQGSTYKKTFLGSSLVDWLISNSFTASRLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 FKLPPHISLHRIVDKMHDSNTGIRSSPNMEQGSTYKKTFLGSSLVDWLISNSFTASRLEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 VTLASMLMEENFLRPVGVRSMGAIRSGDLAEQFLDDSTALYTFAESYKKKISPKEEISLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 VTLASMLMEENFLRPVGVRSMGAIRSGDLAEQFLDDSTALYTFAESYKKKISPKEEISLS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 TVELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 TVELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSL
              250       260       270       280       290       300

              310       320       330       340       350   
pF1KE0 VSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 VSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLT
              310       320       330       340       350   

>>CCDS1887.1 PLEK gene_id:5341|Hs108|chr2                 (350 aa)
 initn: 784 init1: 537 opt: 859  Z-score: 930.7  bits: 180.7 E(32554): 1.6e-45
Smith-Waterman score: 859; 38.8% identity (71.1% similar) in 353 aa overlap (1-350:1-343)

               10        20        30        40        50        60
pF1KE0 MEDGVLKEGFLVKRGHIVHNWKARWFILRQNTLVYYKLEGGRRVTPPKGRILLDGCTITC
       ::   ..::.:::.: . ..::  : .: .. . .:: ..    . ::: : : : :.: 
CCDS18 MEPKRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSD---NSPKGMIPLKGSTLTS
               10        20        30        40           50       

               70        80        90       100       110       120
pF1KE0 PCLEYENRPLLIKLKTQTSTEYFLEACSREERDAWAFEITGAIHAGQPGKVQQLHSLRNS
       :: .. .: ...:. :  . ..:..:   ::::::. .:  ::.  . :.    .: : :
CCDS18 PCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDIKKAIKCIEGGQKFARKSTRRS
        60        70        80        90       100       110       

              130       140       150        160       170         
pF1KE0 FKLPPHISLHRIVDKMHDSNTGIRSSPNMEQGST-YKKTFLGSSLVDWLISNSFTASRLE
       ..::  :.:  .  .:.:.. ::.   :.:. .  ... : :. ..:::.::. . .: :
CCDS18 IRLPETIDLGALYLSMKDTEKGIKEL-NLEKDKKIFNHCFTGNCVIDWLVSNQSVRNRQE
       120       130       140        150       160       170      

     180       190       200       210       220         230       
pF1KE0 AVTLASMLMEENFLRPVGVRSMGAIRSGDLAEQFLDDSTALYTFAES--YKKKISPKEEI
       .. .:: :..:..:.:.:  : .:. .:   . :::.  :.: : .:  . .. :  ...
CCDS18 GLMIASSLLNEGYLQPAGDMSKSAV-DGTAENPFLDNPDAFYYFPDSGFFCEENSSDDDV
        180       190       200        210       220       230     

       240       250       260       270       280       290       
pF1KE0 SLSTVELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLR
        :.  :. :...::: : ::::.:::::::.:.::.:::.::::::.  :. :.:.. ::
CCDS18 ILKE-EFRGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAED-PLGAIHLR
          240       250       260       270       280        290   

       300       310       320       330       340       350       
pF1KE0 GSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLT    
       : .:...:.:.  .: :.. . :::..:: :..::..::..  ::.:::.::.       
CCDS18 GCVVTSVESNS--NGRKSE-EENLFEIITADEVHYFLQAATPKERTEWIRAIQMASRTGK
           300         310        320       330       340       350




353 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 03:08:52 2016 done: Sat Nov  5 03:08:53 2016
 Total Scan time:  2.670 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]