FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0809, 335 aa
  1>>>pF1KE0809 335 - 335 aa - 335 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1116+/- 0.001; mu= 16.9435+/- 0.060
 mean_var=200.7071+/-90.010, 0's: 0 Z-trim(104.9): 194  B-trim: 1062 in 2/48
 Lambda= 0.090530
 statistics sampled from 7721 (8125) to 7721 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.25), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS14625.1 GPR119 gene_id:139760|Hs108|chrX       ( 335) 2192 299.8   2e-81


>>CCDS14625.1 GPR119 gene_id:139760|Hs108|chrX            (335 aa)
 initn: 2192 init1: 2192 opt: 2192  Z-score: 1575.1  bits: 299.8 E(32554): 2e-81
Smith-Waterman score: 2192; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)

               10        20        30        40        50        60
pF1KE0 MESSFSFGVILAVLASLIIATNTLVAVAVLLLIHKNDGVSLCFTLNLAVADTLIGVAISG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MESSFSFGVILAVLASLIIATNTLVAVAVLLLIHKNDGVSLCFTLNLAVADTLIGVAISG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LLTDQLSSPSRPTQKTLCSLRMAFVTSSAAASVLTVMLITFDRYLAIKQPFRYLKIMSGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LLTDQLSSPSRPTQKTLCSLRMAFVTSSAAASVLTVMLITFDRYLAIKQPFRYLKIMSGF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VAGACIAGLWLVSYLIGFLPLGIPMFQQTAYKGQCSFFAVFHPHFVLTLSCVGFFPAMLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VAGACIAGLWLVSYLIGFLPLGIPMFQQTAYKGQCSFFAVFHPHFVLTLSCVGFFPAMLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 FVFFYCDMLKIASMHSQQIRKMEHAGAMAGGYRSPRTPSDFKALRTVSVLIGSFALSWTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FVFFYCDMLKIASMHSQQIRKMEHAGAMAGGYRSPRTPSDFKALRTVSVLIGSFALSWTP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 FLITGIVQVACQECHLYLVLERYLWLLGVGNSLLNPLIYAYWQKEVRLQLYHMALGVKKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FLITGIVQVACQECHLYLVLERYLWLLGVGNSLLNPLIYAYWQKEVRLQLYHMALGVKKV
              250       260       270       280       290       300

              310       320       330     
pF1KE0 LTSFLLFLSARNCGPERPRESSCHIVTISSSEFDG
       :::::::::::::::::::::::::::::::::::
CCDS14 LTSFLLFLSARNCGPERPRESSCHIVTISSSEFDG
              310       320       330     




335 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 03:16:38 2016 done: Sat Nov  5 03:16:38 2016
 Total Scan time:  2.640 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]