FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0843, 353 aa
  1>>>pF1KE0843 353 - 353 aa - 353 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9878+/-0.00103; mu= 18.0473+/- 0.062
 mean_var=67.9800+/-14.961, 0's: 0 Z-trim(103.2): 58  B-trim: 447 in 1/50
 Lambda= 0.155555
 statistics sampled from 7252 (7300) to 7252 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.575), E-opt: 0.2 (0.224), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS12951.1 VN1R1 gene_id:57191|Hs108|chr19        ( 353) 2389 545.4 2.6e-155
CCDS12862.1 VN1R2 gene_id:317701|Hs108|chr19       ( 395)  827 194.9 9.5e-50
CCDS33099.1 VN1R4 gene_id:317703|Hs108|chr19       ( 301)  815 192.1   5e-49


>>CCDS12951.1 VN1R1 gene_id:57191|Hs108|chr19             (353 aa)
 initn: 2389 init1: 2389 opt: 2389  Z-score: 2901.8  bits: 545.4 E(32554): 2.6e-155
Smith-Waterman score: 2389; 100.0% identity (100.0% similar) in 353 aa overlap (1-353:1-353)

               10        20        30        40        50        60
pF1KE0 MVGDTLKLLSPLMTRYFFLLFYSTDSSDLNENQHPLDFDEMAFGKVKSGISFLIQTGVGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MVGDTLKLLSPLMTRYFFLLFYSTDSSDLNENQHPLDFDEMAFGKVKSGISFLIQTGVGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LGNSFLLCFYNLILFTGHKLRPTDLILSQLALANSMVLFFKGIPQTMAAFGLKYLLNDTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LGNSFLLCFYNLILFTGHKLRPTDLILSQLALANSMVLFFKGIPQTMAAFGLKYLLNDTG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 CKFVFYYHRVGTRVSLSTICLLNGFQAIKLNPSICRWMEIKIRSPRFIDFCCLLCWAPHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 CKFVFYYHRVGTRVSLSTICLLNGFQAIKLNPSICRWMEIKIRSPRFIDFCCLLCWAPHV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LMNASVLLLVNGPLNSKNSSAKNNYGYCSYKASKRFSSLHAVLYFSPDFMSLGFMVWASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LMNASVLLLVNGPLNSKNSSAKNNYGYCSYKASKRFSSLHAVLYFSPDFMSLGFMVWASG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 SMVFFLYRHKQQVQHNHSNRLSCRPSQEARATHTIMVLVSSFFVFYSVHSFLTIWTTVVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SMVFFLYRHKQQVQHNHSNRLSCRPSQEARATHTIMVLVSSFFVFYSVHSFLTIWTTVVA
              250       260       270       280       290       300

              310       320       330       340       350   
pF1KE0 NPGQWIVTNSVLVASCFPARSPFVLIMSDTHISQFCFACRTRKTLFPNLVVMP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NPGQWIVTNSVLVASCFPARSPFVLIMSDTHISQFCFACRTRKTLFPNLVVMP
              310       320       330       340       350   

>>CCDS12862.1 VN1R2 gene_id:317701|Hs108|chr19            (395 aa)
 initn: 773 init1: 507 opt: 827  Z-score: 1006.6  bits: 194.9 E(32554): 9.5e-50
Smith-Waterman score: 827; 43.2% identity (71.0% similar) in 303 aa overlap (53-352:94-395)

             30        40        50        60        70        80  
pF1KE0 STDSSDLNENQHPLDFDEMAFGKVKSGISFLIQTGVGILGNSFLLCFYNLILFTGHKLRP
                                     :.:. ::::::  :: .: .. : :.: : 
CCDS12 SSLCLVSLFLHSLVSAHGEKPTKPVGLDPTLFQVVVGILGNFSLLYYYMFLYFRGYKPRS
            70        80        90       100       110       120   

             90       100       110       120       130       140  
pF1KE0 TDLILSQLALANSMVLFFKGIPQTMAAFGLKYLLNDTGCKFVFYYHRVGTRVSLSTICLL
       ::::: .:..:.:.:.. : ::.:::.::::.. :  ::::..: ::::  ::... :::
CCDS12 TDLILRHLTVADSLVILSKRIPETMATFGLKHFDNYFGCKFLLYAHRVGRGVSIGSTCLL
           130       140       150       160       170       180   

            150       160       170       180       190       200  
pF1KE0 NGFQAIKLNPSICRWMEIKIRSPRFIDFCCLLCWAPHVLMNASVLLLVNGPLNSKNSSAK
       . ::.: .::   :: :.:...: .: .  .:::: :.:.::   . ..:  ...: . :
CCDS12 SVFQVITINPRNSRWAEMKVKAPTYIGLSNILCWAFHMLVNAIFPIYTTGKWSNNNITKK
           190       200       210       220       230       240   

            210        220       230       240       250       260 
pF1KE0 NNYGYCSYKASKRFS-SLHAVLYFSPDFMSLGFMVWASGSMVFFLYRHKQQVQHNHSNRL
       .. ::::   : . . :..:.:    : . ::.:.:::.:.:. ::::::::::   : :
CCDS12 GDLGYCSAPLSDEVTKSVYAALTSFHDVLCLGLMLWASSSIVLVLYRHKQQVQHICRNNL
           250       260       270       280       290       300   

             270       280       290        300       310       320
pF1KE0 SCRPSQEARATHTIMVLVSSFFVFYSVHSFLT-IWTTVVANPGQWIVTNSVLVASCFPAR
           :   :: ..:..:::.: . :.. ::.: .. ..  : . :.:....:. .:::. 
CCDS12 YPNSSPGNRAIQSILALVSTFALCYAL-SFITYVYLALFDNSSWWLVNTAALIIACFPTI
           310       320       330        340       350       360  

              330        340       350   
pF1KE0 SPFVLIMSDTHISQFC-FACRTRKTLFPNLVVMP
       :::::.  :   :..: . ::  . .: ..  : 
CCDS12 SPFVLMCRDPSRSRLCSICCRRNRRFFHDFRKM 
            370       380       390      

>>CCDS33099.1 VN1R4 gene_id:317703|Hs108|chr19            (301 aa)
 initn: 800 init1: 468 opt: 815  Z-score: 993.7  bits: 192.1 E(32554): 5e-49
Smith-Waterman score: 815; 43.1% identity (70.6% similar) in 299 aa overlap (41-338:1-298)

               20        30        40        50        60        70
pF1KE0 PLMTRYFFLLFYSTDSSDLNENQHPLDFDEMAFGKVKSGISFLIQTGVGILGNSFLLCFY
                                     ::   :  :. .: :: ::.::.  .:  :
CCDS33                               MASRYVAVGM-ILSQTVVGVLGSFSVLLHY
                                             10         20         

               80        90       100       110       120       130
pF1KE0 NLILFTGHKLRPTDLILSQLALANSMVLFFKGIPQTMAAFGLKYLLNDTGCKFVFYYHRV
         .  :: .:: ::::...: .:: ..:  ::.::::::::..:.::  :::.::: :::
CCDS33 LSFYCTGCRLRSTDLIVKHLIVANFLALRCKGVPQTMAAFGVRYFLNALGCKLVFYLHRV
      30        40        50        60        70        80         

              140       150       160       170       180       190
pF1KE0 GTRVSLSTICLLNGFQAIKLNPSICRWMEIKIRSPRFIDFCCLLCWAPHVLMNASVLLLV
       :  ::..: :::. ::.: ..    :: ..: ..:. . :  ::::   .:.:    . :
CCDS33 GRGVSIGTTCLLSVFQVITVSSRKSRWAKLKEKAPKHVGFSVLLCWIVCMLVNIIFPMYV
      90       100       110       120       130       140         

              200       210        220       230       240         
pF1KE0 NGPLNSKNSSAKNNYGYCSYKASKRFS-SLHAVLYFSPDFMSLGFMVWASGSMVFFLYRH
       .:  :  : ..... ::::  ...... .:.:.:   :: . ::.:.:.:.::: .:.::
CCDS33 TGKWNYTNITVNEDLGYCSGGGNNKIAQTLRAMLLSFPDVLCLGLMLWVSSSMVCILHRH
     150       160       170       180       190       200         

     250       260       270       280       290       300         
pF1KE0 KQQVQHNHSNRLSCRPSQEARATHTIMVLVSSFFVFYSVHSFLTIWTTVVANPGQWIVTN
       ::.:::   . :: : : : :::..:..:::.:   :..  .. .  ... ::.. .:..
CCDS33 KQRVQHIDRSNLSPRASPENRATQSILILVSTFVSSYTLSCLFQVCMALLDNPNSLLVNT
     210       220       230       240       250       260         

     310       320       330       340       350   
pF1KE0 SVLVASCFPARSPFVLIMSDTHISQFCFACRTRKTLFPNLVVMP
       :.:.. :::. :::::.  :  . .::::               
CCDS33 SALMSVCFPTLSPFVLMSCDPSVYRFCFAWKR            
     270       280       290       300             




353 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 03:33:06 2016 done: Sat Nov  5 03:33:07 2016
 Total Scan time:  2.510 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]