Result of FASTA (omim) for
pF1KE0844
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0844, 301 aa
1>>>pF1KE0844 301 - 301 aa - 301 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7093+/-0.00044; mu= 12.5614+/- 0.027
mean_var=66.0252+/-13.807, 0's: 0 Z-trim(110.6): 81 B-trim: 1116 in 1/50
Lambda= 0.157841
statistics sampled from 18987 (19044) to 18987 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.588), E-opt: 0.2 (0.223), width: 16
Scan time: 6.540
The best scores are: opt bits E(85289)
NP_065684 (OMIM: 605234) vomeronasal type-1 recept ( 353) 815 194.8 2.1e-49
NP_003982 (OMIM: 131244,277580,600155,600501) endo ( 436) 161 45.9 0.00017
NP_000106 (OMIM: 131244,277580,600155,600501) endo ( 442) 161 45.9 0.00017
NP_001116131 (OMIM: 131244,277580,600155,600501) e ( 442) 161 45.9 0.00017
NP_001188326 (OMIM: 131244,277580,600155,600501) e ( 532) 161 45.9 0.0002
NP_001718 (OMIM: 300107) bombesin receptor subtype ( 399) 148 42.9 0.0012
NP_795364 (OMIM: 613965) taste receptor type 2 mem ( 307) 140 41.1 0.0034
>>NP_065684 (OMIM: 605234) vomeronasal type-1 receptor 1 (353 aa)
initn: 800 init1: 468 opt: 815 Z-score: 1008.0 bits: 194.8 E(85289): 2.1e-49
Smith-Waterman score: 815; 43.1% identity (70.6% similar) in 299 aa overlap (1-298:41-338)
10 20
pF1KE0 MASRYVAVGM-ILSQTVVGVLGSFSVLLHY
:: : :. .: :: ::.::. .: :
NP_065 PLMTRYFFLLFYSTDSSDLNENQHPLDFDEMAFGKVKSGISFLIQTGVGILGNSFLLCFY
20 30 40 50 60 70
30 40 50 60 70 80
pF1KE0 LSFYCTGCRLRSTDLIVKHLIVANFLALRCKGVPQTMAAFGVRYFLNALGCKLVFYLHRV
. :: .:: ::::...: .:: ..: ::.::::::::..:.:: :::.::: :::
NP_065 NLILFTGHKLRPTDLILSQLALANSMVLFFKGIPQTMAAFGLKYLLNDTGCKFVFYYHRV
80 90 100 110 120 130
90 100 110 120 130 140
pF1KE0 GRGVSIGTTCLLSVFQVITVSSRKSRWAKLKEKAPKHVGFSVLLCWIVCMLVNIIFPMYV
: ::..: :::. ::.: .. :: ..: ..:. . : :::: .:.: . :
NP_065 GTRVSLSTICLLNGFQAIKLNPSICRWMEIKIRSPRFIDFCCLLCWAPHVLMNASVLLLV
140 150 160 170 180 190
150 160 170 180 190 200
pF1KE0 TGKWNYTNITVNEDLGYCSGGGNNKIAQTLRAMLLSFPDVLCLGLMLWVSSSMVCILHRH
.: : : ..... :::: ...... .:.:.: :: . ::.:.:.:.::: .:.::
NP_065 NGPLNSKNSSAKNNYGYCSYKASKRFS-SLHAVLYFSPDFMSLGFMVWASGSMVFFLYRH
200 210 220 230 240
210 220 230 240 250 260
pF1KE0 KQRVQHIDRSNLSPRASPENRATQSILILVSTFVSSYTLSCLFQVCMALLDNPNSLLVNT
::.::: . :: : : : :::..:..:::.: :.. .. . ... ::.. .:..
NP_065 KQQVQHNHSNRLSCRPSQEARATHTIMVLVSSFFVFYSVHSFLTIWTTVVANPGQWIVTN
250 260 270 280 290 300
270 280 290 300
pF1KE0 SALMSVCFPTLSPFVLMSCDPSVYRFCFAWKR
:.:.. :::. :::::. : . .::::
NP_065 SVLVASCFPARSPFVLIMSDTHISQFCFACRTRKTLFPNLVVMP
310 320 330 340 350
>>NP_003982 (OMIM: 131244,277580,600155,600501) endothel (436 aa)
initn: 93 init1: 72 opt: 161 Z-score: 201.7 bits: 45.9 E(85289): 0.00017
Smith-Waterman score: 161; 22.0% identity (55.6% similar) in 304 aa overlap (16-297:113-397)
10 20 30 40
pF1KE0 MASRYVAVGMILSQTVVGVLGSFSVLLHYLSFYCTGCRLRSTDLI
:.:..:. :.::. . : . : . ...
NP_003 RTISPPPCQGPIEIKETFKYINTVVSCLVFVLGIIGN-STLLRII--YKNKCMRNGPNIL
90 100 110 120 130
50 60 70 80 90 100
pF1KE0 VKHLIVANFLALRCKGVP-QTMAAFGVRYFLNALGCKLVFYLHRVGRGVSIGTTCLLSVF
. : ....: . .: ... .. . ..: :::: ...... :... . : ::.
NP_003 IASLALGDLLHI-VIDIPINVYKLLAEDWPFGAEMCKLVPFIQKASVGITVLSLCALSID
140 150 160 170 180 190
110 120 130 140 150 160
pF1KE0 QVITVSSRKSRWAKLKE-KAPKHVGFSVLLCWIVCMLVNIIFPMYVTGKWNYTNITVNED
. .:.: :...: .:: .. ..: :.: ... . : . .. ::..
NP_003 RYRAVAS----WSRIKGIGVPKWTAVEIVLIWVVSVVLAV--PEAI----GFDIITMDYK
200 210 220 230 240
170 180 190 200 210
pF1KE0 LGY---CSGGGNNKIA--QTLRAM----LLSFPDVLCLGLMLWVSSSMVCILHRHKQRVQ
.: : .: : : .. :.:: : :.. . . :.: . :.:. .:
NP_003 GSYLRICLLHPVQKTAFMQFYKTAKDWWLFSFYFCLPLAITAFFYTLMTCEMLRKKSGMQ
250 260 270 280 290 300
220 230 240 250 260 270
pF1KE0 HIDRSNLSPRASPENRATQSILILVSTFVSSYT---LSCLFQVCMALLDNPNSLLVNTSA
..:. : ....... :: .:. . :: .... . ..:: . :
NP_003 IALNDHLKQR----REVAKTVFCLVLVFALCWLPLHLSRILKLTLYNQNDPNRCEL-LSF
310 320 330 340 350 360
280 290 300
pF1KE0 LMSVCFPTLSPFVLMSC-DP-SVY----RF--CFAWKR
:. . . .. : :: .: ..: :: ::
NP_003 LLVLDYIGINMASLNSCINPIALYLVSKRFKNCFKAGPHVGNKLVMLFSVNIECDGTVNQ
370 380 390 400 410 420
NP_003 NPTMWPERKSNNN
430
>>NP_000106 (OMIM: 131244,277580,600155,600501) endothel (442 aa)
initn: 93 init1: 72 opt: 161 Z-score: 201.6 bits: 45.9 E(85289): 0.00017
Smith-Waterman score: 161; 22.0% identity (55.6% similar) in 304 aa overlap (16-297:113-397)
10 20 30 40
pF1KE0 MASRYVAVGMILSQTVVGVLGSFSVLLHYLSFYCTGCRLRSTDLI
:.:..:. :.::. . : . : . ...
NP_000 RTISPPPCQGPIEIKETFKYINTVVSCLVFVLGIIGN-STLLRII--YKNKCMRNGPNIL
90 100 110 120 130
50 60 70 80 90 100
pF1KE0 VKHLIVANFLALRCKGVP-QTMAAFGVRYFLNALGCKLVFYLHRVGRGVSIGTTCLLSVF
. : ....: . .: ... .. . ..: :::: ...... :... . : ::.
NP_000 IASLALGDLLHI-VIDIPINVYKLLAEDWPFGAEMCKLVPFIQKASVGITVLSLCALSID
140 150 160 170 180 190
110 120 130 140 150 160
pF1KE0 QVITVSSRKSRWAKLKE-KAPKHVGFSVLLCWIVCMLVNIIFPMYVTGKWNYTNITVNED
. .:.: :...: .:: .. ..: :.: ... . : . .. ::..
NP_000 RYRAVAS----WSRIKGIGVPKWTAVEIVLIWVVSVVLAV--PEAI----GFDIITMDYK
200 210 220 230 240
170 180 190 200 210
pF1KE0 LGY---CSGGGNNKIA--QTLRAM----LLSFPDVLCLGLMLWVSSSMVCILHRHKQRVQ
.: : .: : : .. :.:: : :.. . . :.: . :.:. .:
NP_000 GSYLRICLLHPVQKTAFMQFYKTAKDWWLFSFYFCLPLAITAFFYTLMTCEMLRKKSGMQ
250 260 270 280 290 300
220 230 240 250 260 270
pF1KE0 HIDRSNLSPRASPENRATQSILILVSTFVSSYT---LSCLFQVCMALLDNPNSLLVNTSA
..:. : ....... :: .:. . :: .... . ..:: . :
NP_000 IALNDHLKQR----REVAKTVFCLVLVFALCWLPLHLSRILKLTLYNQNDPNRCEL-LSF
310 320 330 340 350 360
280 290 300
pF1KE0 LMSVCFPTLSPFVLMSC-DP-SVY----RF--CFAWKR
:. . . .. : :: .: ..: :: ::
NP_000 LLVLDYIGINMASLNSCINPIALYLVSKRFKNCFKSCLCCWCQSFEEKQSLEEKQSCLKF
370 380 390 400 410 420
NP_000 KANDHGYDNFRSSNKYSSS
430 440
>>NP_001116131 (OMIM: 131244,277580,600155,600501) endot (442 aa)
initn: 93 init1: 72 opt: 161 Z-score: 201.6 bits: 45.9 E(85289): 0.00017
Smith-Waterman score: 161; 22.0% identity (55.6% similar) in 304 aa overlap (16-297:113-397)
10 20 30 40
pF1KE0 MASRYVAVGMILSQTVVGVLGSFSVLLHYLSFYCTGCRLRSTDLI
:.:..:. :.::. . : . : . ...
NP_001 RTISPPPCQGPIEIKETFKYINTVVSCLVFVLGIIGN-STLLRII--YKNKCMRNGPNIL
90 100 110 120 130
50 60 70 80 90 100
pF1KE0 VKHLIVANFLALRCKGVP-QTMAAFGVRYFLNALGCKLVFYLHRVGRGVSIGTTCLLSVF
. : ....: . .: ... .. . ..: :::: ...... :... . : ::.
NP_001 IASLALGDLLHI-VIDIPINVYKLLAEDWPFGAEMCKLVPFIQKASVGITVLSLCALSID
140 150 160 170 180 190
110 120 130 140 150 160
pF1KE0 QVITVSSRKSRWAKLKE-KAPKHVGFSVLLCWIVCMLVNIIFPMYVTGKWNYTNITVNED
. .:.: :...: .:: .. ..: :.: ... . : . .. ::..
NP_001 RYRAVAS----WSRIKGIGVPKWTAVEIVLIWVVSVVLAV--PEAI----GFDIITMDYK
200 210 220 230 240
170 180 190 200 210
pF1KE0 LGY---CSGGGNNKIA--QTLRAM----LLSFPDVLCLGLMLWVSSSMVCILHRHKQRVQ
.: : .: : : .. :.:: : :.. . . :.: . :.:. .:
NP_001 GSYLRICLLHPVQKTAFMQFYKTAKDWWLFSFYFCLPLAITAFFYTLMTCEMLRKKSGMQ
250 260 270 280 290 300
220 230 240 250 260 270
pF1KE0 HIDRSNLSPRASPENRATQSILILVSTFVSSYT---LSCLFQVCMALLDNPNSLLVNTSA
..:. : ....... :: .:. . :: .... . ..:: . :
NP_001 IALNDHLKQR----REVAKTVFCLVLVFALCWLPLHLSRILKLTLYNQNDPNRCEL-LSF
310 320 330 340 350 360
280 290 300
pF1KE0 LMSVCFPTLSPFVLMSC-DP-SVY----RF--CFAWKR
:. . . .. : :: .: ..: :: ::
NP_001 LLVLDYIGINMASLNSCINPIALYLVSKRFKNCFKSCLCCWCQSFEEKQSLEEKQSCLKF
370 380 390 400 410 420
NP_001 KANDHGYDNFRSSNKYSSS
430 440
>>NP_001188326 (OMIM: 131244,277580,600155,600501) endot (532 aa)
initn: 93 init1: 72 opt: 161 Z-score: 200.3 bits: 45.9 E(85289): 0.0002
Smith-Waterman score: 161; 22.0% identity (55.6% similar) in 304 aa overlap (16-297:203-487)
10 20 30 40
pF1KE0 MASRYVAVGMILSQTVVGVLGSFSVLLHYLSFYCTGCRLRSTDLI
:.:..:. :.::. . : . : . ...
NP_001 RTISPPPCQGPIEIKETFKYINTVVSCLVFVLGIIGN-STLLRII--YKNKCMRNGPNIL
180 190 200 210 220
50 60 70 80 90 100
pF1KE0 VKHLIVANFLALRCKGVP-QTMAAFGVRYFLNALGCKLVFYLHRVGRGVSIGTTCLLSVF
. : ....: . .: ... .. . ..: :::: ...... :... . : ::.
NP_001 IASLALGDLLHI-VIDIPINVYKLLAEDWPFGAEMCKLVPFIQKASVGITVLSLCALSID
230 240 250 260 270 280
110 120 130 140 150 160
pF1KE0 QVITVSSRKSRWAKLKE-KAPKHVGFSVLLCWIVCMLVNIIFPMYVTGKWNYTNITVNED
. .:.: :...: .:: .. ..: :.: ... . : . .. ::..
NP_001 RYRAVAS----WSRIKGIGVPKWTAVEIVLIWVVSVVLAV--PEAI----GFDIITMDYK
290 300 310 320 330
170 180 190 200 210
pF1KE0 LGY---CSGGGNNKIA--QTLRAM----LLSFPDVLCLGLMLWVSSSMVCILHRHKQRVQ
.: : .: : : .. :.:: : :.. . . :.: . :.:. .:
NP_001 GSYLRICLLHPVQKTAFMQFYKTAKDWWLFSFYFCLPLAITAFFYTLMTCEMLRKKSGMQ
340 350 360 370 380 390
220 230 240 250 260 270
pF1KE0 HIDRSNLSPRASPENRATQSILILVSTFVSSYT---LSCLFQVCMALLDNPNSLLVNTSA
..:. : ....... :: .:. . :: .... . ..:: . :
NP_001 IALNDHLKQR----REVAKTVFCLVLVFALCWLPLHLSRILKLTLYNQNDPNRCEL-LSF
400 410 420 430 440 450
280 290 300
pF1KE0 LMSVCFPTLSPFVLMSC-DP-SVY----RF--CFAWKR
:. . . .. : :: .: ..: :: ::
NP_001 LLVLDYIGINMASLNSCINPIALYLVSKRFKNCFKSCLCCWCQSFEEKQSLEEKQSCLKF
460 470 480 490 500 510
NP_001 KANDHGYDNFRSSNKYSSS
520 530
>>NP_001718 (OMIM: 300107) bombesin receptor subtype-3 [ (399 aa)
initn: 84 init1: 63 opt: 148 Z-score: 186.3 bits: 42.9 E(85289): 0.0012
Smith-Waterman score: 148; 20.7% identity (54.9% similar) in 304 aa overlap (5-299:51-332)
10 20 30
pF1KE0 MASRYVAVGMILSQTVVGVLGSFSVLLHYLSFYC
:.. ..:.: ::.::. ..:.. :.
NP_001 ESSSSVVSNDNTNKGWSGDNSPGIEALCAIYITYAVIIS---VGILGN-AILIKV--FFK
30 40 50 60 70
40 50 60 70 80 90
pF1KE0 TGCRLRSTDLIVKHLIVANFLAL-RCKGVPQT-MAAFGVRYFLNALGCKLVFYLHRVGRG
: .... : ...: : : : : . : : .... .:::.. ... .. :
NP_001 TKSMQTVPNIFITSLAFGDLLLLLTCVPVDATHYLAEG--WLFGRIGCKVLSFIRLTSVG
80 90 100 110 120 130
100 110 120 130 140
pF1KE0 VSIGTTCLLSVFQVITVSSRKSRWAKLKEKAPKHVGFSVLL---C-WIVCMLVNIIFPMY
::. : .:: ..: . .: :. :... ... . : ::: :. . ..
NP_001 VSVFTLTILS-------ADRYKAVVKPLERQPSNAILKTCVKAGCVWIVSMIFALPEAIF
140 150 160 170 180
150 160 170 180 190 200
pF1KE0 VTGKWNYTNITVNEDLGYCSGGG-NNKIAQTLRAML--LSFPDVLCLGLMLWVSSSMVCI
.. ... . . : . :.. ..:. : ....: : : .. :... : ..
NP_001 -SNVYTFRDPNKNMTFESCTSYPVSKKLLQEIHSLLCFLVFY-IIPLSIISVYYSLIART
190 200 210 220 230 240
210 220 230 240 250 260
pF1KE0 LHRHKQRVQHIDRSNLSPRASPENRATQSILILVSTFVSSYTLSCLFQVCMALLDNPNSL
:.. . ..:. . ..: ....:.::. :. . . :. . .. ..
NP_001 LYKSTLNIPTEEQSHARKQIESRKRIARTVLVLVALFALCWLPNHLLYLYHSFT---SQT
250 260 270 280 290 300
270 280 290 300
pF1KE0 LVNTSALMSVCFPTLSPFVLMSCDPSVYRFCFAWKR
:. ::. . : .: :: . : : . :
NP_001 YVDPSAMHFI-FTIFSR-VLAFSNSCVNPFALYWLSKSFQKHFKAQLFCCKAERPEPPVA
310 320 330 340 350
NP_001 DTSLTTLAVMGTVPGTGSIQMSEISVTSFTGCSVKQAEDRF
360 370 380 390
>>NP_795364 (OMIM: 613965) taste receptor type 2 member (307 aa)
initn: 83 init1: 83 opt: 140 Z-score: 178.3 bits: 41.1 E(85289): 0.0034
Smith-Waterman score: 140; 23.1% identity (56.9% similar) in 260 aa overlap (38-286:40-284)
10 20 30 40 50 60
pF1KE0 VGMILSQTVVGVLGSFSVLLHYLSFYCTGCRLRSTDLIVKHLIVANFLALRCKGVPQTM-
:: :.:. : .. : :. :. ...
NP_795 VLLFSLLSLLGIAANGFIVLVLGREWLRYGRLLPLDMILISLGASRF-CLQLVGTVHNFY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 -AAFGVRYFLNALGCKLVFYLH-RVGRGVSIGTTCLLSVFQVITVSS-RKSRWAKLKEKA
.: :.: ..:: . :.:: . .... :::. . ... .: . :: .
NP_795 YSAQKVEYS-GGLG-RQFFHLHWHFLNSATFWFCSWLSVLFCVKIANITHSTFLWLKWRF
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 PKHVGFSVLLCWIVCMLVNIIFPMYVTGKWNYTNITVNEDLGYCSGGGNNKIAQ----TL
: : . .: .. ......: . .. : .. . . : . :..: .:
NP_795 PGWVPWLLLGSVLISFIITLLF--FWVNYPVYQEFLIRKFSGNMTYKWNTRIETYYFPSL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 RAMLLSFP-DVLCLGLMLWVSSSMVCILHRHKQRVQHIDRSNLSPRASPENRATQSILIL
. .. :.: .:. ...:: ..: :.:: ::.:: .: .: .. ..:: .:..
NP_795 KLVIWSIPFSVFLVSIMLLINS-----LRRHTQRMQHNGHSLQDPSTQAHTRALKSLI--
190 200 210 220 230
240 250 260 270 280 290
pF1KE0 VSTFVSSYTLSCLFQVCMA--LLDNPNSLLVNTSALMSVCFPTLSPFVLMSCDPSVYRFC
.:. :.:: : . : ... :.. . . .:. .. ::.:.
NP_795 --SFLILYALSFLSLIIDAAKFISMQNDFYWPWQIAVYLCI-SVHPFILIFSNLKLRSVF
240 250 260 270 280 290
300
pF1KE0 FAWKR
NP_795 SQLLLLARGFWVA
300
301 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 03:33:44 2016 done: Sat Nov 5 03:33:45 2016
Total Scan time: 6.540 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]