FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0914, 257 aa
  1>>>pF1KE0914 257 - 257 aa - 257 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3157+/-0.000646; mu= 6.3327+/- 0.039
 mean_var=117.3959+/-23.089, 0's: 0 Z-trim(115.3): 5  B-trim: 0 in 0/53
 Lambda= 0.118372
 statistics sampled from 15855 (15860) to 15855 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.487), width:  16
 Scan time:  2.740

The best scores are:                                      opt bits E(32554)
CCDS6359.2 MYC gene_id:4609|Hs108|chr8             ( 454) 1710 302.0 4.7e-82


>>CCDS6359.2 MYC gene_id:4609|Hs108|chr8                  (454 aa)
 initn: 1710 init1: 1710 opt: 1710  Z-score: 1586.7  bits: 302.0 E(32554): 4.7e-82
Smith-Waterman score: 1710; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:16-267)

                              10        20        30        40     
pF1KE0                MPLNVSFTNRNYDLDYDSVQPYFYCDEEENFYQQQQQSELQPPAP
                      :::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MDFFRVVENQQPPATMPLNVSFTNRNYDLDYDSVQPYFYCDEEENFYQQQQQSELQPPAP
               10        20        30        40        50        60

          50        60        70        80        90       100     
pF1KE0 SEDIWKKFELLPTPPLSPSRRSGLCSPSYVAVTPFSLRGDNDGGGGSFSTADQLEMVTEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 SEDIWKKFELLPTPPLSPSRRSGLCSPSYVAVTPFSLRGDNDGGGGSFSTADQLEMVTEL
               70        80        90       100       110       120

         110       120       130       140       150       160     
pF1KE0 LGGDMVNQSFICDPDDETFIKNIIIQDCMWSGFSAAAKLVSEKLASYQAARKDSGSPNPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LGGDMVNQSFICDPDDETFIKNIIIQDCMWSGFSAAAKLVSEKLASYQAARKDSGSPNPA
              130       140       150       160       170       180

         170       180       190       200       210       220     
pF1KE0 RGHSVCSTSSLYLQDLSAAASECIDPSVVFPYPLNDSSSPKSCASQDSSAFSPSSDSLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 RGHSVCSTSSLYLQDLSAAASECIDPSVVFPYPLNDSSSPKSCASQDSSAFSPSSDSLLS
              190       200       210       220       230       240

         230       240       250                                   
pF1KE0 STESSPQGSPEPLVLHEETPPTTSSDSGGTRR                            
       :::::::::::::::::::::::::::                                 
CCDS63 STESSPQGSPEPLVLHEETPPTTSSDSEEEQEDEEEIDVVSVEKRQAPGKRSESGSPSAG
              250       260       270       280       290       300




257 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:07:46 2016 done: Sat Nov  5 12:07:47 2016
 Total Scan time:  2.740 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]