Result of FASTA (omim) for
pF1KE0916
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0916, 287 aa
1>>>pF1KE0916 287 - 287 aa - 287 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6669+/-0.000299; mu= 5.5123+/- 0.019
mean_var=153.0139+/-30.148, 0's: 0 Z-trim(122.4): 31 B-trim: 2 in 1/59
Lambda= 0.103683
statistics sampled from 40347 (40385) to 40347 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.474), width: 16
Scan time: 8.580
The best scores are: opt bits E(85289)
NP_064567 (OMIM: 606564) protein TMEPAI isoform a ( 287) 1989 308.4 9.9e-84
NP_954638 (OMIM: 606564) protein TMEPAI isoform b ( 252) 1741 271.3 1.3e-72
NP_001242905 (OMIM: 606564) protein TMEPAI isoform ( 259) 1739 271.0 1.6e-72
NP_954639 (OMIM: 606564) protein TMEPAI isoform c ( 237) 1667 260.2 2.7e-69
NP_954640 (OMIM: 606564) protein TMEPAI isoform c ( 237) 1667 260.2 2.7e-69
XP_016881450 (OMIM: 606571) PREDICTED: low-density ( 290) 1138 181.2 2.1e-45
NP_001003674 (OMIM: 606571) low-density lipoprotei ( 269) 1122 178.7 1e-44
XP_006722417 (OMIM: 606571) PREDICTED: low-density ( 306) 1121 178.6 1.3e-44
NP_852146 (OMIM: 606571) low-density lipoprotein r ( 306) 1121 178.6 1.3e-44
XP_005258197 (OMIM: 606571) PREDICTED: low-density ( 306) 1121 178.6 1.3e-44
XP_006722416 (OMIM: 606571) PREDICTED: low-density ( 306) 1121 178.6 1.3e-44
XP_011524039 (OMIM: 606571) PREDICTED: low-density ( 259) 1119 178.3 1.4e-44
XP_016881452 (OMIM: 606571) PREDICTED: low-density ( 259) 1119 178.3 1.4e-44
XP_016881453 (OMIM: 606571) PREDICTED: low-density ( 259) 1119 178.3 1.4e-44
XP_016881458 (OMIM: 606571) PREDICTED: low-density ( 229) 1047 167.5 2.2e-41
XP_016881459 (OMIM: 606571) PREDICTED: low-density ( 229) 1047 167.5 2.2e-41
XP_016881457 (OMIM: 606571) PREDICTED: low-density ( 229) 1047 167.5 2.2e-41
XP_016881456 (OMIM: 606571) PREDICTED: low-density ( 229) 1047 167.5 2.2e-41
XP_011524040 (OMIM: 606571) PREDICTED: low-density ( 229) 1047 167.5 2.2e-41
NP_001263178 (OMIM: 606571) low-density lipoprotei ( 229) 1047 167.5 2.2e-41
XP_016881460 (OMIM: 606571) PREDICTED: low-density ( 229) 1047 167.5 2.2e-41
XP_016881455 (OMIM: 606571) PREDICTED: low-density ( 229) 1047 167.5 2.2e-41
XP_016881454 (OMIM: 606571) PREDICTED: low-density ( 229) 1047 167.5 2.2e-41
NP_001263180 (OMIM: 606571) low-density lipoprotei ( 208) 890 144.0 2.3e-34
XP_016881461 (OMIM: 606571) PREDICTED: low-density ( 211) 854 138.6 9.9e-33
NP_001003675 (OMIM: 606571) low-density lipoprotei ( 251) 854 138.6 1.1e-32
XP_016881451 (OMIM: 606571) PREDICTED: low-density ( 272) 854 138.7 1.2e-32
NP_852147 (OMIM: 606571) low-density lipoprotein r ( 288) 854 138.7 1.3e-32
>>NP_064567 (OMIM: 606564) protein TMEPAI isoform a [Hom (287 aa)
initn: 1989 init1: 1989 opt: 1989 Z-score: 1624.2 bits: 308.4 E(85289): 9.9e-84
Smith-Waterman score: 1989; 100.0% identity (100.0% similar) in 287 aa overlap (1-287:1-287)
10 20 30 40 50 60
pF1KE0 MHRLMGVNSTAAAAAGQPNVSCTCNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 MHRLMGVNSTAAAAAGQPNVSCTCNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 LLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 VPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 ESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYP
190 200 210 220 230 240
250 260 270 280
pF1KE0 GSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
:::::::::::::::::::::::::::::::::::::::::::::::
NP_064 GSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
250 260 270 280
>>NP_954638 (OMIM: 606564) protein TMEPAI isoform b [Hom (252 aa)
initn: 1741 init1: 1741 opt: 1741 Z-score: 1424.6 bits: 271.3 E(85289): 1.3e-72
Smith-Waterman score: 1741; 99.2% identity (100.0% similar) in 252 aa overlap (36-287:1-252)
10 20 30 40 50 60
pF1KE0 GVNSTAAAAAGQPNVSCTCNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITCLLSHY
..::::::::::::::::::::::::::::
NP_954 MAELEFVQIIIIVVVMMVMVVVITCLLSHY
10 20 30
70 80 90 100 110 120
pF1KE0 KLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 KLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFA
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 QRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 QRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE0 PPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 PPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQ
160 170 180 190 200 210
250 260 270 280
pF1KE0 HQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
::::::::::::::::::::::::::::::::::::::::::
NP_954 HQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
220 230 240 250
>>NP_001242905 (OMIM: 606564) protein TMEPAI isoform d [ (259 aa)
initn: 1739 init1: 1739 opt: 1739 Z-score: 1422.8 bits: 271.0 E(85289): 1.6e-72
Smith-Waterman score: 1739; 100.0% identity (100.0% similar) in 250 aa overlap (38-287:10-259)
10 20 30 40 50 60
pF1KE0 NSTAAAAAGQPNVSCTCNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITCLLSHYKL
::::::::::::::::::::::::::::::
NP_001 MPAIPAHGAELEFVQIIIIVVVMMVMVVVITCLLSHYKL
10 20 30
70 80 90 100 110 120
pF1KE0 SARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQR
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 ERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAPP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE0 NRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQHQ
160 170 180 190 200 210
250 260 270 280
pF1KE0 QSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
::::::::::::::::::::::::::::::::::::::::
NP_001 QSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
220 230 240 250
>>NP_954639 (OMIM: 606564) protein TMEPAI isoform c prec (237 aa)
initn: 1667 init1: 1667 opt: 1667 Z-score: 1365.1 bits: 260.2 E(85289): 2.7e-69
Smith-Waterman score: 1667; 100.0% identity (100.0% similar) in 237 aa overlap (51-287:1-237)
30 40 50 60 70 80
pF1KE0 SCTCNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITCLLSHYKLSARSFISRHSQGR
::::::::::::::::::::::::::::::
NP_954 MMVMVVVITCLLSHYKLSARSFISRHSQGR
10 20 30
90 100 110 120 130 140
pF1KE0 RREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQRERFHRFQPTYPYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 RREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQRERFHRFQPTYPYL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE0 QHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAPPNRTIFDSDLMDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 QHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAPPNRTIFDSDLMDSA
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE0 RLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQHQQSSGPPSLLEGTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 RLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQHQQSSGPPSLLEGTR
160 170 180 190 200 210
270 280
pF1KE0 LHHTHIAPLESAAIWSKEKDKQKGHPL
:::::::::::::::::::::::::::
NP_954 LHHTHIAPLESAAIWSKEKDKQKGHPL
220 230
>>NP_954640 (OMIM: 606564) protein TMEPAI isoform c prec (237 aa)
initn: 1667 init1: 1667 opt: 1667 Z-score: 1365.1 bits: 260.2 E(85289): 2.7e-69
Smith-Waterman score: 1667; 100.0% identity (100.0% similar) in 237 aa overlap (51-287:1-237)
30 40 50 60 70 80
pF1KE0 SCTCNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITCLLSHYKLSARSFISRHSQGR
::::::::::::::::::::::::::::::
NP_954 MMVMVVVITCLLSHYKLSARSFISRHSQGR
10 20 30
90 100 110 120 130 140
pF1KE0 RREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQRERFHRFQPTYPYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 RREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQRERFHRFQPTYPYL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE0 QHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAPPNRTIFDSDLMDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 QHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAPPNRTIFDSDLMDSA
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE0 RLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQHQQSSGPPSLLEGTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 RLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQHQQSSGPPSLLEGTR
160 170 180 190 200 210
270 280
pF1KE0 LHHTHIAPLESAAIWSKEKDKQKGHPL
:::::::::::::::::::::::::::
NP_954 LHHTHIAPLESAAIWSKEKDKQKGHPL
220 230
>>XP_016881450 (OMIM: 606571) PREDICTED: low-density lip (290 aa)
initn: 821 init1: 559 opt: 1138 Z-score: 936.2 bits: 181.2 E(85289): 2.1e-45
Smith-Waterman score: 1138; 64.0% identity (81.6% similar) in 272 aa overlap (15-285:25-288)
10 20 30 40 50
pF1KE0 MHRLMGVNSTAAAAAGQPNVSCTCNCKRSLFQSMEITELEFVQIIIIVVV
:.. : . . .: :. :. .:::::.::::::::
XP_016 MLSQEPGGRERAKRGAAHRKRWREAAELNGGLSREC--SVHGSIAVTELEFAQIIIIVVV
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 MMVMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVY
. ::::::.:::.:::.:.::::.: .:.:::::.: .:::::::.:.. : : ..
XP_016 VTVMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSDSAAPRLGASE--IM
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 APPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLR
:: ::...: : ::.:: ::::::::.::::::::::::::::::::::::::::::
XP_016 HAPRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLR
120 130 140 150 160 170
180 190 200 210 220
pF1KE0 DPEQQLELNRESVRAPPNRTIFDSDLMDSARL-GGPCPPSSNSGISATCYGSGGRMEGPP
:::::.::::::::::::::::::::.: : ::::::::::::::. .:.:::::::
XP_016 DPEQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPP
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE0 PTYSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
::::::.::.::.:: :.: :. .:.::. . ::. . : ::.. :.
XP_016 PTYSEVMGHHPGASFLHHQRSNAH---RGSRLQFQQNNA-ESTIVPIKGKDRKPGNLV
240 250 260 270 280 290
>>NP_001003674 (OMIM: 606571) low-density lipoprotein re (269 aa)
initn: 821 init1: 559 opt: 1122 Z-score: 923.7 bits: 178.7 E(85289): 1e-44
Smith-Waterman score: 1122; 65.6% identity (83.0% similar) in 259 aa overlap (28-285:17-267)
10 20 30 40 50 60
pF1KE0 MHRLMGVNSTAAAAAGQPNVSCTCNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITC
..:: .. .::::.::::::::. ::::::.:
NP_001 MSSDHLNNSTLKEAQFKDLF--LKKAELEFAQIIIIVVVVTVMVVVIVC
10 20 30 40
70 80 90 100 110 120
pF1KE0 LLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLA
::.:::.:.::::.: .:.:::::.: .:::::::.:.. : : .. :: ::..
NP_001 LLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSDSAAPRLGASE--IMHAPRSRDRFT
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 VPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNR
.: : ::.:: ::::::::.:::::::::::::::::::::::::::::::::::.::::
NP_001 APSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNR
110 120 130 140 150 160
190 200 210 220 230
pF1KE0 ESVRAPPNRTIFDSDLMDSARL-GGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHY
::::::::::::::::.: : ::::::::::::::. .:.:::::::::::::.::.
NP_001 ESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHH
170 180 190 200 210 220
240 250 260 270 280
pF1KE0 PGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
::.:: :.: :. .:.::. . ::. . : ::.. :.
NP_001 PGASFLHHQRSNAH---RGSRLQFQQNNA-ESTIVPIKGKDRKPGNLV
230 240 250 260
>>XP_006722417 (OMIM: 606571) PREDICTED: low-density lip (306 aa)
initn: 821 init1: 559 opt: 1121 Z-score: 922.1 bits: 178.6 E(85289): 1.3e-44
Smith-Waterman score: 1121; 67.2% identity (83.6% similar) in 250 aa overlap (37-285:61-304)
10 20 30 40 50 60
pF1KE0 VNSTAAAAAGQPNVSCTCNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITCLLSHYK
.::::.::::::::. ::::::.:::.:::
XP_006 VCNQQNDCGDNSDEENCLLVTEHPPPGIFNSELEFAQIIIIVVVVTVMVVVIVCLLNHYK
40 50 60 70 80 90
70 80 90 100 110 120
pF1KE0 LSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQ
.:.::::.: .:.:::::.: .:::::::.:.. : : .. :: ::...: : :
XP_006 VSTRSFINRPNQSRRREDGLPQEGCLWPSDSAAPRLGASE--IMHAPRSRDRFTAPSFIQ
100 110 120 130 140
130 140 150 160 170 180
pF1KE0 RERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAP
:.:: ::::::::.:::::::::::::::::::::::::::::::::::.::::::::::
XP_006 RDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAP
150 160 170 180 190 200
190 200 210 220 230 240
pF1KE0 PNRTIFDSDLMDSARL-GGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQ
::::::::::.: : ::::::::::::::. .:.:::::::::::::.::.::.::
XP_006 PNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHHPGASFL
210 220 230 240 250 260
250 260 270 280
pF1KE0 HQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
:.: :. .:.::. . ::. . : ::.. :.
XP_006 HHQRSNAH---RGSRLQFQQ-NNAESTIVPIKGKDRKPGNLV
270 280 290 300
>>NP_852146 (OMIM: 606571) low-density lipoprotein recep (306 aa)
initn: 821 init1: 559 opt: 1121 Z-score: 922.1 bits: 178.6 E(85289): 1.3e-44
Smith-Waterman score: 1121; 67.2% identity (83.6% similar) in 250 aa overlap (37-285:61-304)
10 20 30 40 50 60
pF1KE0 VNSTAAAAAGQPNVSCTCNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITCLLSHYK
.::::.::::::::. ::::::.:::.:::
NP_852 VCNQQNDCGDNSDEENCLLVTEHPPPGIFNSELEFAQIIIIVVVVTVMVVVIVCLLNHYK
40 50 60 70 80 90
70 80 90 100 110 120
pF1KE0 LSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQ
.:.::::.: .:.:::::.: .:::::::.:.. : : .. :: ::...: : :
NP_852 VSTRSFINRPNQSRRREDGLPQEGCLWPSDSAAPRLGASE--IMHAPRSRDRFTAPSFIQ
100 110 120 130 140
130 140 150 160 170 180
pF1KE0 RERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAP
:.:: ::::::::.:::::::::::::::::::::::::::::::::::.::::::::::
NP_852 RDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAP
150 160 170 180 190 200
190 200 210 220 230 240
pF1KE0 PNRTIFDSDLMDSARL-GGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQ
::::::::::.: : ::::::::::::::. .:.:::::::::::::.::.::.::
NP_852 PNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHHPGASFL
210 220 230 240 250 260
250 260 270 280
pF1KE0 HQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
:.: :. .:.::. . ::. . : ::.. :.
NP_852 HHQRSNAH---RGSRLQFQQ-NNAESTIVPIKGKDRKPGNLV
270 280 290 300
>>XP_005258197 (OMIM: 606571) PREDICTED: low-density lip (306 aa)
initn: 821 init1: 559 opt: 1121 Z-score: 922.1 bits: 178.6 E(85289): 1.3e-44
Smith-Waterman score: 1121; 67.2% identity (83.6% similar) in 250 aa overlap (37-285:61-304)
10 20 30 40 50 60
pF1KE0 VNSTAAAAAGQPNVSCTCNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITCLLSHYK
.::::.::::::::. ::::::.:::.:::
XP_005 VCNQQNDCGDNSDEENCLLVTEHPPPGIFNSELEFAQIIIIVVVVTVMVVVIVCLLNHYK
40 50 60 70 80 90
70 80 90 100 110 120
pF1KE0 LSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQ
.:.::::.: .:.:::::.: .:::::::.:.. : : .. :: ::...: : :
XP_005 VSTRSFINRPNQSRRREDGLPQEGCLWPSDSAAPRLGASE--IMHAPRSRDRFTAPSFIQ
100 110 120 130 140
130 140 150 160 170 180
pF1KE0 RERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAP
:.:: ::::::::.:::::::::::::::::::::::::::::::::::.::::::::::
XP_005 RDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAP
150 160 170 180 190 200
190 200 210 220 230 240
pF1KE0 PNRTIFDSDLMDSARL-GGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQ
::::::::::.: : ::::::::::::::. .:.:::::::::::::.::.::.::
XP_005 PNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHHPGASFL
210 220 230 240 250 260
250 260 270 280
pF1KE0 HQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
:.: :. .:.::. . ::. . : ::.. :.
XP_005 HHQRSNAH---RGSRLQFQQ-NNAESTIVPIKGKDRKPGNLV
270 280 290 300
287 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:29:36 2016 done: Sat Nov 5 04:29:37 2016
Total Scan time: 8.580 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]