Result of FASTA (omim) for
pF1KE0925
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0925, 328 aa
1>>>pF1KE0925 328 - 328 aa - 328 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7251+/-0.000421; mu= 9.2363+/- 0.026
mean_var=97.7035+/-19.254, 0's: 0 Z-trim(112.5): 62 B-trim: 139 in 1/54
Lambda= 0.129754
statistics sampled from 21388 (21450) to 21388 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.614), E-opt: 0.2 (0.251), width: 16
Scan time: 5.910
The best scores are: opt bits E(85289)
NP_001186190 (OMIM: 610667) ubiquitin carboxyl-ter ( 328) 2159 414.7 1.4e-115
NP_057068 (OMIM: 610667) ubiquitin carboxyl-termin ( 329) 2147 412.4 6.5e-115
NP_001186192 (OMIM: 610667) ubiquitin carboxyl-ter ( 316) 2082 400.2 2.9e-111
NP_001186191 (OMIM: 610667) ubiquitin carboxyl-ter ( 326) 2076 399.1 6.4e-111
XP_005245303 (OMIM: 610667) PREDICTED: ubiquitin c ( 393) 2076 399.2 7.6e-111
XP_016856922 (OMIM: 610667) PREDICTED: ubiquitin c ( 384) 2070 398.0 1.6e-110
XP_016856921 (OMIM: 610667) PREDICTED: ubiquitin c ( 394) 2064 396.9 3.6e-110
XP_016856920 (OMIM: 610667) PREDICTED: ubiquitin c ( 394) 2064 396.9 3.6e-110
XP_005245305 (OMIM: 610667) PREDICTED: ubiquitin c ( 319) 1982 381.5 1.3e-105
XP_016856924 (OMIM: 610667) PREDICTED: ubiquitin c ( 348) 1980 381.2 1.8e-105
XP_005245304 (OMIM: 610667) PREDICTED: ubiquitin c ( 320) 1970 379.3 6e-105
XP_016856926 (OMIM: 610667) PREDICTED: ubiquitin c ( 291) 1590 308.1 1.4e-83
XP_016856925 (OMIM: 610667) PREDICTED: ubiquitin c ( 292) 1578 305.9 6.8e-83
XP_006711432 (OMIM: 610667) PREDICTED: ubiquitin c ( 410) 1423 276.9 4.9e-74
XP_006711431 (OMIM: 610667) PREDICTED: ubiquitin c ( 411) 1423 276.9 4.9e-74
XP_016856919 (OMIM: 610667) PREDICTED: ubiquitin c ( 420) 1423 276.9 5e-74
XP_016856918 (OMIM: 610667) PREDICTED: ubiquitin c ( 420) 1423 276.9 5e-74
XP_006711430 (OMIM: 610667) PREDICTED: ubiquitin c ( 421) 1423 276.9 5.1e-74
XP_011507906 (OMIM: 610667) PREDICTED: ubiquitin c ( 421) 1423 276.9 5.1e-74
XP_005245301 (OMIM: 610667) PREDICTED: ubiquitin c ( 422) 1423 276.9 5.1e-74
XP_006711429 (OMIM: 610667) PREDICTED: ubiquitin c ( 423) 1423 276.9 5.1e-74
XP_016856930 (OMIM: 610667) PREDICTED: ubiquitin c ( 204) 1311 255.8 5.5e-68
XP_016856931 (OMIM: 610667) PREDICTED: ubiquitin c ( 204) 1311 255.8 5.5e-68
XP_005245306 (OMIM: 610667) PREDICTED: ubiquitin c ( 205) 1299 253.6 2.6e-67
XP_016856929 (OMIM: 610667) PREDICTED: ubiquitin c ( 205) 1299 253.6 2.6e-67
XP_011507909 (OMIM: 610667) PREDICTED: ubiquitin c ( 347) 1246 243.8 4e-64
XP_016856923 (OMIM: 610667) PREDICTED: ubiquitin c ( 375) 1244 243.4 5.6e-64
XP_006711433 (OMIM: 610667) PREDICTED: ubiquitin c ( 376) 1244 243.4 5.6e-64
XP_016856933 (OMIM: 610667) PREDICTED: ubiquitin c ( 192) 1234 241.4 1.1e-63
XP_016856932 (OMIM: 610667) PREDICTED: ubiquitin c ( 203) 1216 238.1 1.2e-62
XP_011507911 (OMIM: 610667) PREDICTED: ubiquitin c ( 319) 854 170.4 4.6e-42
XP_011507910 (OMIM: 610667) PREDICTED: ubiquitin c ( 319) 854 170.4 4.6e-42
XP_016856928 (OMIM: 610667) PREDICTED: ubiquitin c ( 231) 736 148.2 1.5e-35
XP_011532454 (OMIM: 603089,614327) PREDICTED: ubiq ( 714) 583 119.8 1.7e-26
NP_004647 (OMIM: 603089,614327) ubiquitin carboxyl ( 729) 583 119.8 1.8e-26
XP_011532452 (OMIM: 603089,614327) PREDICTED: ubiq ( 737) 583 119.8 1.8e-26
XP_011532451 (OMIM: 603089,614327) PREDICTED: ubiq ( 752) 583 119.8 1.8e-26
XP_016856927 (OMIM: 610667) PREDICTED: ubiquitin c ( 232) 575 118.1 1.8e-26
XP_006711434 (OMIM: 610667) PREDICTED: ubiquitin c ( 232) 575 118.1 1.8e-26
XP_016862792 (OMIM: 603089,614327) PREDICTED: ubiq ( 711) 513 106.7 1.5e-22
XP_011532453 (OMIM: 603089,614327) PREDICTED: ubiq ( 734) 513 106.7 1.6e-22
NP_005993 (OMIM: 603090) ubiquitin carboxyl-termin ( 230) 299 66.4 6.5e-11
XP_016876216 (OMIM: 603090) PREDICTED: ubiquitin c ( 226) 285 63.8 3.9e-10
NP_001257881 (OMIM: 603090) ubiquitin carboxyl-ter ( 194) 256 58.3 1.5e-08
NP_004172 (OMIM: 191342,613643,615491) ubiquitin c ( 223) 228 53.1 6.3e-07
XP_016876215 (OMIM: 603090) PREDICTED: ubiquitin c ( 252) 162 40.8 0.0037
XP_016876214 (OMIM: 603090) PREDICTED: ubiquitin c ( 261) 162 40.8 0.0038
>>NP_001186190 (OMIM: 610667) ubiquitin carboxyl-termina (328 aa)
initn: 2159 init1: 2159 opt: 2159 Z-score: 2196.2 bits: 414.7 E(85289): 1.4e-115
Smith-Waterman score: 2159; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328)
10 20 30 40 50 60
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
250 260 270 280 290 300
310 320
pF1KE0 TLAEHQQLIPLVEKAKEKQNAKKAQETK
::::::::::::::::::::::::::::
NP_001 TLAEHQQLIPLVEKAKEKQNAKKAQETK
310 320
>>NP_057068 (OMIM: 610667) ubiquitin carboxyl-terminal h (329 aa)
initn: 1669 init1: 1639 opt: 2147 Z-score: 2184.1 bits: 412.4 E(85289): 6.5e-115
Smith-Waterman score: 2147; 99.7% identity (99.7% similar) in 329 aa overlap (1-328:1-329)
10 20 30 40 50 60
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
190 200 210 220 230 240
250 260 270 280 290
pF1KE0 QLAEE-PMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELL
::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 QLAEEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELL
250 260 270 280 290 300
300 310 320
pF1KE0 KTLAEHQQLIPLVEKAKEKQNAKKAQETK
:::::::::::::::::::::::::::::
NP_057 KTLAEHQQLIPLVEKAKEKQNAKKAQETK
310 320
>>NP_001186192 (OMIM: 610667) ubiquitin carboxyl-termina (316 aa)
initn: 2108 init1: 2082 opt: 2082 Z-score: 2118.6 bits: 400.2 E(85289): 2.9e-111
Smith-Waterman score: 2082; 99.7% identity (100.0% similar) in 316 aa overlap (1-316:1-316)
10 20 30 40 50 60
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
250 260 270 280 290 300
310 320
pF1KE0 TLAEHQQLIPLVEKAKEKQNAKKAQETK
::::::::::::::.:
NP_001 TLAEHQQLIPLVEKGK
310
>>NP_001186191 (OMIM: 610667) ubiquitin carboxyl-termina (326 aa)
initn: 2076 init1: 2076 opt: 2076 Z-score: 2112.3 bits: 399.1 E(85289): 6.4e-111
Smith-Waterman score: 2076; 100.0% identity (100.0% similar) in 314 aa overlap (1-314:1-314)
10 20 30 40 50 60
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
250 260 270 280 290 300
310 320
pF1KE0 TLAEHQQLIPLVEKAKEKQNAKKAQETK
::::::::::::::
NP_001 TLAEHQQLIPLVEKFEKHFEKTLLGK
310 320
>>XP_005245303 (OMIM: 610667) PREDICTED: ubiquitin carbo (393 aa)
initn: 2076 init1: 2076 opt: 2076 Z-score: 2111.0 bits: 399.2 E(85289): 7.6e-111
Smith-Waterman score: 2076; 100.0% identity (100.0% similar) in 314 aa overlap (1-314:68-381)
10 20 30
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGA
::::::::::::::::::::::::::::::
XP_005 AGLLRSVAGGSWCGGQLRARGGSGRCVARAMTGNAGEWCLMESDPGVFTELIKGFGCRGA
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE0 QVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACAT
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE0 QAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFE
160 170 180 190 200 210
160 170 180 190 200 210
pF1KE0 FDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQK
220 230 240 250 260 270
220 230 240 250 260 270
pF1KE0 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLI
280 290 300 310 320 330
280 290 300 310 320
pF1KE0 EEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
::::::::::::::::::::::::::::::::::::::::::::
XP_005 EEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKFEKHFEKTLLGK
340 350 360 370 380 390
>>XP_016856922 (OMIM: 610667) PREDICTED: ubiquitin carbo (384 aa)
initn: 2110 init1: 1639 opt: 2070 Z-score: 2105.1 bits: 398.0 E(85289): 1.6e-110
Smith-Waterman score: 2070; 99.4% identity (99.7% similar) in 317 aa overlap (1-316:68-384)
10 20 30
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGA
::::::::::::::::::::::::::::::
XP_016 AGLLRSVAGGSWCGGQLRARGGSGRCVARAMTGNAGEWCLMESDPGVFTELIKGFGCRGA
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE0 QVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACAT
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE0 QAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFE
160 170 180 190 200 210
160 170 180 190 200 210
pF1KE0 FDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQK
220 230 240 250 260 270
220 230 240 250 260
pF1KE0 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEE-PMDTDQGNSMLSAIQSEVAKNQML
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
XP_016 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGNSMLSAIQSEVAKNQML
280 290 300 310 320 330
270 280 290 300 310 320
pF1KE0 IEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
:::::::::::::::::::::::::::::::::::::::::::::.:
XP_016 IEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKGK
340 350 360 370 380
>>XP_016856921 (OMIM: 610667) PREDICTED: ubiquitin carbo (394 aa)
initn: 1669 init1: 1639 opt: 2064 Z-score: 2098.9 bits: 396.9 E(85289): 3.6e-110
Smith-Waterman score: 2064; 99.7% identity (99.7% similar) in 315 aa overlap (1-314:68-382)
10 20 30
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGA
::::::::::::::::::::::::::::::
XP_016 AGLLRSVAGGSWCGGQLRARGGSGRCVARAMTGNAGEWCLMESDPGVFTELIKGFGCRGA
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE0 QVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACAT
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE0 QAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFE
160 170 180 190 200 210
160 170 180 190 200 210
pF1KE0 FDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQK
220 230 240 250 260 270
220 230 240 250 260
pF1KE0 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEE-PMDTDQGNSMLSAIQSEVAKNQML
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
XP_016 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGNSMLSAIQSEVAKNQML
280 290 300 310 320 330
270 280 290 300 310 320
pF1KE0 IEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
:::::::::::::::::::::::::::::::::::::::::::::
XP_016 IEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKFEKHFEKTLLGK
340 350 360 370 380 390
>>XP_016856920 (OMIM: 610667) PREDICTED: ubiquitin carbo (394 aa)
initn: 1669 init1: 1639 opt: 2064 Z-score: 2098.9 bits: 396.9 E(85289): 3.6e-110
Smith-Waterman score: 2064; 99.7% identity (99.7% similar) in 315 aa overlap (1-314:68-382)
10 20 30
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGA
::::::::::::::::::::::::::::::
XP_016 AGLLRSVAGGSWCGGQLRARGGSGRCVARAMTGNAGEWCLMESDPGVFTELIKGFGCRGA
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE0 QVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACAT
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE0 QAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFE
160 170 180 190 200 210
160 170 180 190 200 210
pF1KE0 FDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQK
220 230 240 250 260 270
220 230 240 250 260
pF1KE0 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEE-PMDTDQGNSMLSAIQSEVAKNQML
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
XP_016 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGNSMLSAIQSEVAKNQML
280 290 300 310 320 330
270 280 290 300 310 320
pF1KE0 IEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
:::::::::::::::::::::::::::::::::::::::::::::
XP_016 IEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKFEKHFEKTLLGK
340 350 360 370 380 390
>>XP_005245305 (OMIM: 610667) PREDICTED: ubiquitin carbo (319 aa)
initn: 1982 init1: 1982 opt: 1982 Z-score: 2017.4 bits: 381.5 E(85289): 1.3e-105
Smith-Waterman score: 1982; 98.7% identity (99.4% similar) in 308 aa overlap (21-328:12-319)
10 20 30 40 50 60
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
: .. :::::::::::::::::::::::::::::::::::
XP_005 MSLGWLERPPALSRAAGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE0 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE0 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
240 250 260 270 280 290
310 320
pF1KE0 TLAEHQQLIPLVEKAKEKQNAKKAQETK
::::::::::::::::::::::::::::
XP_005 TLAEHQQLIPLVEKAKEKQNAKKAQETK
300 310
>>XP_016856924 (OMIM: 610667) PREDICTED: ubiquitin carbo (348 aa)
initn: 1980 init1: 1980 opt: 1980 Z-score: 2014.7 bits: 381.2 E(85289): 1.8e-105
Smith-Waterman score: 1980; 100.0% identity (100.0% similar) in 303 aa overlap (26-328:46-348)
10 20 30 40 50
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFL
::::::::::::::::::::::::::::::
XP_016 FRYPGWTGAEAGRGRAIVSRRLPSLNPWDAGCRGAQVEEIWSLEPENFEKLKPVHGLIFL
20 30 40 50 60 70
60 70 80 90 100 110
pF1KE0 FKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFK
80 90 100 110 120 130
120 130 140 150 160 170
pF1KE0 EFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRL
140 150 160 170 180 190
180 190 200 210 220 230
pF1KE0 YELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKI
200 210 220 230 240 250
240 250 260 270 280 290
pF1KE0 AELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFI
260 270 280 290 300 310
300 310 320
pF1KE0 MELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
:::::::::::::::::::::::::::::::::
XP_016 MELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
320 330 340
328 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:31:59 2016 done: Sat Nov 5 04:32:00 2016
Total Scan time: 5.910 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]