FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0937, 428 aa
  1>>>pF1KE0937 428 - 428 aa - 428 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.4965+/-0.000905; mu= -9.3073+/- 0.054
 mean_var=351.3008+/-71.899, 0's: 0 Z-trim(117.1): 81  B-trim: 181 in 1/52
 Lambda= 0.068428
 statistics sampled from 17723 (17805) to 17723 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.547), width:  16
 Scan time:  3.610

The best scores are:                                      opt bits E(32554)
CCDS14283.1 ELK1 gene_id:2002|Hs108|chrX           ( 428) 2899 299.4 4.4e-81
CCDS1456.1 ELK4 gene_id:2005|Hs108|chr1            ( 431)  701 82.4 9.2e-16
CCDS59165.1 ELK1 gene_id:2002|Hs108|chrX           (  95)  608 72.8 1.6e-13


>>CCDS14283.1 ELK1 gene_id:2002|Hs108|chrX                (428 aa)
 initn: 2899 init1: 2899 opt: 2899  Z-score: 1569.2  bits: 299.4 E(32554): 4.4e-81
Smith-Waterman score: 2899; 100.0% identity (100.0% similar) in 428 aa overlap (1-428:1-428)

               10        20        30        40        50        60
pF1KE0 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSTEDCPPQPEVSVTSTMPNVAPAAIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSTEDCPPQPEVSVTSTMPNVAPAAIH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AAPGDTVSGKPGTPKGAGMAGPGGLARSSRNEYMRSGLYSTFTIQSLQPQPPPHPRPAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AAPGDTVSGKPGTPKGAGMAGPGGLARSSRNEYMRSGLYSTFTIQSLQPQPPPHPRPAVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LPSAAPAGAAAPPSGSRSTSPSPLEACLEAEEAGLPLQVILTPPEAPNLKSEELNVEPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LPSAAPAGAAAPPSGSRSTSPSPLEACLEAEEAGLPLQVILTPPEAPNLKSEELNVEPGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 GRALPPEVKVEGPKEELEVAGERGFVPETTKAEPEVPPQEGVPARLPAVVMDTAGQAGGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GRALPPEVKVEGPKEELEVAGERGFVPETTKAEPEVPPQEGVPARLPAVVMDTAGQAGGH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 AASSPEISQPQKGRKPRDLELPLSPSLLGGPGPERTPGSGSGSGLQAPGPALTPSLLPTH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AASSPEISQPQKGRKPRDLELPLSPSLLGGPGPERTPGSGSGSGLQAPGPALTPSLLPTH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 TLTPVLLTPSSLPPSIHFWSTLSPIAPRSPAKLSFQFPSSGSAQVHIPSISVDGLSTPVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TLTPVLLTPSSLPPSIHFWSTLSPIAPRSPAKLSFQFPSSGSAQVHIPSISVDGLSTPVV
              370       380       390       400       410       420

               
pF1KE0 LSPGPQKP
       ::::::::
CCDS14 LSPGPQKP
               

>>CCDS1456.1 ELK4 gene_id:2005|Hs108|chr1                 (431 aa)
 initn: 725 init1: 338 opt: 701  Z-score: 396.5  bits: 82.4 E(32554): 9.2e-16
Smith-Waterman score: 786; 37.4% identity (57.7% similar) in 463 aa overlap (1-427:1-430)

               10        20        30        40        50        60
pF1KE0 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL
       :: ..::::::::::..  : :.: ::: :: .:::..:::::::::.:::: :::::::
CCDS14 MDSAITLWQFLLQLLQKPQNKHMICWTSNDG-QFKLLQAEEVARLWGIRKNKPNMNYDKL
               10        20        30         40        50         

               70        80        90       100       110       120
pF1KE0 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSTEDCPPQPEVSVTSTMPNVAPAAIH
       :::::::: ::::.::.:::::::::::::.      .  :.    . .   ..  . . 
CCDS14 SRALRYYYVKNIIKKVNGQKFVYKFVSYPEIL-----NMDPMTVGRIEGDCESLNFSEVS
      60        70        80        90            100       110    

              130       140       150       160                    
pF1KE0 AAPGDTVSGKPGTPKGAGMAGPGGLARSSRNEYMRSGLYSTFTIQSL-------------
       ..  :. .:    :       ::.   ::::.:..:::::.::..::             
CCDS14 SSSKDVENGGKDKPPQ-----PGA-KTSSRNDYIHSGLYSSFTLNSLNSSNVKLFKLIKT
          120       130             140       150       160        

               170       180             190       200       210   
pF1KE0 --------QPQPPPHPRPAVV----LPSAAPA--GAAAPPSGSRSTSPSPLEACLEAEEA
               . . : .: :.:.     ::  :    .::  : . : :::  :  ..: :.
CCDS14 ENPAEKLAEKKSPQEPTPSVIKFVTTPSKKPPVEPVAATISIGPSISPSS-EETIQALET
      170       180       190       200       210        220       

           220       230       240       250       260       270   
pF1KE0 GLPLQVILTPPEAPNLKSEELNVEPGLGRALPPEVKVEGPKEELEVAGERGFVPETTKAE
              :. :. :.:..     .   . :  : ..   : .:      :   :  . ..
CCDS14 -------LVSPKLPSLEAPTSASNVMTAFATTPPISSIPPLQE----PPRTPSPPLS-SH
              230       240       250       260           270      

            280          290       300       310       320         
pF1KE0 PEVPPQ-EGV---PARLPAVVMDTAGQAGGHAASSPEISQPQKGRKPRDLELPLSPSLLG
       :..  . ..:   : .::  .     .  .    . .... ....::. :::  .:.:. 
CCDS14 PDIDTDIDSVASQPMELPENLSLEPKDQDSVLLEKDKVNNSSRSKKPKGLEL--APTLVI
         280       290       300       310       320         330   

     330       340       350       360       370       380         
pF1KE0 GPGPERTPGSGSGSGLQAPGPALTPSLLPTHTLTPVLLTPSSLPPSIHFWSTLSPIAPRS
         .     :  : :    :  .:::...   . ::..:::: :  ::::::::::.:: :
CCDS14 TSSDPSPLGILSPS---LPTASLTPAFF---SQTPIILTPSPLLSSIHFWSTLSPVAPLS
           340          350          360       370       380       

     390            400       410       420        
pF1KE0 PAKLS-----FQFPSSGSAQVHIPSISVDGLSTPVVLSPGPQKP
       ::.:.     :::::  ...  .   ..:: :::  .::  :: 
CCDS14 PARLQGANTLFQFPSVLNSHGPFTLSGLDGPSTPGPFSPDLQKT
       390       400       410       420       430 

>>CCDS59165.1 ELK1 gene_id:2002|Hs108|chrX                (95 aa)
 initn: 607 init1: 607 opt: 608  Z-score: 356.1  bits: 72.8 E(32554): 1.6e-13
Smith-Waterman score: 608; 95.8% identity (97.9% similar) in 95 aa overlap (1-95:1-94)

               10        20        30        40        50        60
pF1KE0 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSTEDCPPQPEVSVTSTMPNVAPAAIH
       :::::::::::::::::::::::::::::: . :.                         
CCDS59 SRALRYYYDKNIIRKVSGQKFVYKFVSYPE-SHCAP                        
               70        80        90                              

              130       140       150       160       170       180
pF1KE0 AAPGDTVSGKPGTPKGAGMAGPGGLARSSRNEYMRSGLYSTFTIQSLQPQPPPHPRPAVV




428 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:36:22 2016 done: Sat Nov  5 04:36:22 2016
 Total Scan time:  3.610 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]