Result of FASTA (ccds) for
pF1KE0971
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0971, 540 aa
1>>>pF1KE0971 540 - 540 aa - 540 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.3000+/-0.00163; mu= -0.8455+/- 0.093
mean_var=412.7435+/-94.006, 0's: 0 Z-trim(106.6): 383 B-trim: 0 in 0/52
Lambda= 0.063130
statistics sampled from 8636 (9055) to 8636 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.278), width: 16
Scan time: 3.130
The best scores are: opt bits E(32554)
CCDS6247.1 RIPK2 gene_id:8767|Hs108|chr8 ( 540) 3615 344.8 1.5e-94
CCDS13675.1 RIPK4 gene_id:54101|Hs108|chr21 ( 784) 692 78.8 2.6e-14
CCDS44734.1 ANKK1 gene_id:255239|Hs108|chr11 ( 765) 665 76.4 1.4e-13
>>CCDS6247.1 RIPK2 gene_id:8767|Hs108|chr8 (540 aa)
initn: 3615 init1: 3615 opt: 3615 Z-score: 1811.0 bits: 344.8 E(32554): 1.5e-94
Smith-Waterman score: 3615; 100.0% identity (100.0% similar) in 540 aa overlap (1-540:1-540)
10 20 30 40 50 60
pF1KE0 MNGEAICSALPTIPYHKLADLRYLSRGASGTVSSARHADWRVQVAVKHLHIHTPLLDSER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MNGEAICSALPTIPYHKLADLRYLSRGASGTVSSARHADWRVQVAVKHLHIHTPLLDSER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KDVLREAEILHKARFSYILPILGICNEPEFLGIVTEYMPNGSLNELLHRKTEYPDVAWPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 KDVLREAEILHKARFSYILPILGICNEPEFLGIVTEYMPNGSLNELLHRKTEYPDVAWPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RFRILHEIALGVNYLHNMTPPLLHHDLKTQNILLDNEFHVKIADFGLSKWRMMSLSQSRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 RFRILHEIALGVNYLHNMTPPLLHHDLKTQNILLDNEFHVKIADFGLSKWRMMSLSQSRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 SKSAPEGGTIIYMPPENYEPGQKSRASIKHDIYSYAVITWEVLSRKQPFEDVTNPLQIMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SKSAPEGGTIIYMPPENYEPGQKSRASIKHDIYSYAVITWEVLSRKQPFEDVTNPLQIMY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 SVSQGHRPVINEESLPYDIPHRARMISLIESGWAQNPDERPSFLKCLIELEPVLRTFEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SVSQGHRPVINEESLPYDIPHRARMISLIESGWAQNPDERPSFLKCLIELEPVLRTFEEI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 TFLEAVIQLKKTKLQSVSSAIHLCDKKKMELSLNIPVNHGPQEESCGSSQLHENSGSPET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 TFLEAVIQLKKTKLQSVSSAIHLCDKKKMELSLNIPVNHGPQEESCGSSQLHENSGSPET
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 SRSLPAPQDNDFLSRKAQDCYFMKLHHCPGNHSWDSTISGSQRAAFCDHKTTPCSSAIIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SRSLPAPQDNDFLSRKAQDCYFMKLHHCPGNHSWDSTISGSQRAAFCDHKTTPCSSAIIN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 PLSTAGNSERLQPGIAQQWIQSKREDIVNQMTEACLNQSLDALLSRDLIMKEDYELVSTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 PLSTAGNSERLQPGIAQQWIQSKREDIVNQMTEACLNQSLDALLSRDLIMKEDYELVSTK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 PTRTSKVRQLLDTTDIQGEEFAKVIVQKLKDNKQMGLQPYPEILVVSRSPSLNLLQNKSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 PTRTSKVRQLLDTTDIQGEEFAKVIVQKLKDNKQMGLQPYPEILVVSRSPSLNLLQNKSM
490 500 510 520 530 540
>>CCDS13675.1 RIPK4 gene_id:54101|Hs108|chr21 (784 aa)
initn: 570 init1: 263 opt: 692 Z-score: 370.5 bits: 78.8 E(32554): 2.6e-14
Smith-Waterman score: 700; 37.4% identity (61.1% similar) in 380 aa overlap (27-384:31-393)
10 20 30 40 50
pF1KE0 MNGEAICSALPTIPYHKLADLRYLSRGASGTVSSARHADWRVQVAVK---HLHIHT
:. : : ..::. :.. .:.: ::.
CCDS13 MEGDGGTPWALALLRTFDAGEFTGWEKVGSGGFGQVYKVRHVHWKTWLAIKCSPSLHVD-
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 PLLDSERKDVLREAEILHKARFSYILPILGICNEPEFLGIVTEYMPNGSLNELLHRKTEY
: :: ..:.::. .. :.: ::::. ::: :: .:.: ::: .:::..:: .
CCDS13 ---DRERMELLEEAKKMEMAKFRYILPVYGICREP--VGLVMEYMETGSLEKLLASE---
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 PDVAWPLRFRILHEIALGVNYLHNMTPPLLHHDLKTQNILLDNEFHVKIADFGLSKWRMM
: . : :::::.:: :.:.:.:: :.::::: ::: ::::: ..::::.::::.:
CCDS13 P-LPWDLRFRIIHETAVGMNFLHCMAPPLLHLDLKPANILLDAHYHVKISDFGLAK--CN
120 130 140 150 160
180 190 200 210 220 230
pF1KE0 SLSQSRSSKSAPEGGTIIYMPPENYEPGQKSRA-SIKHDIYSYAVITWEVLSRKQPFEDV
.::.:.. . ::: :.::: . .::: . :::.::.:.. : ::..:.:: :
CCDS13 GLSHSHDLSMDGLFGTIAYLPPERIR--EKSRLFDTKHDVYSFAIVIWGVLTQKKPFADE
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE0 TNPLQIMYSVSQGHRPVINE--ESLPYDIPHRARMISLIESGWAQNPDERPSFLKCLIEL
: :.:: .: .:::: . .. : : .: :.. : .: ::.: . :
CCDS13 KNILHIMVKVVKGHRPELPPVCRARPRACSH---LIRLMQRCWQGDPRVRPTFQEITSET
230 240 250 260 270 280
300 310 320 330
pF1KE0 EPVL-RTFEEITFLEAVIQLKK----------TKLQSVSSAIHLCDKKKMEL--SLNIPV
: . . .:. ...:. ..:. .:. : . :: .:. :
CCDS13 EDLCEKPDDEVKETAHDLDVKSPPEPRSEVVPARLKRASAPTFDNDYSLSELLSQLDSGV
290 300 310 320 330 340
340 350 360 370 380 390
pF1KE0 NH---GPQEESCGSSQLHENSGSPETSRSLPAPQDNDFLSRKAQDCYFMKLHHCPGNHSW
.. ::.: : .::. . :.. : . :. : :: . . : .
CCDS13 SQAVEGPEELSRSSSESKLPSSGSGKRLSGVSSVDSAFSSRGSLSLSFEREPSTSDLGTT
350 360 370 380 390 400
400 410 420 430 440 450
pF1KE0 DSTISGSQRAAFCDHKTTPCSSAIINPLSTAGNSERLQPGIAQQWIQSKREDIVNQMTEA
CCDS13 DVQKKKLVDAIVSGDTSKLMKILQPQDVDLALDSGASLLHLAVEAGQEECAKWLLLNNAN
410 420 430 440 450 460
>>CCDS44734.1 ANKK1 gene_id:255239|Hs108|chr11 (765 aa)
initn: 453 init1: 261 opt: 665 Z-score: 357.3 bits: 76.4 E(32554): 1.4e-13
Smith-Waterman score: 679; 34.0% identity (62.8% similar) in 379 aa overlap (9-382:12-359)
10 20 30 40 50
pF1KE0 MNGEAICSALPTIPYHKL-ADLRYLSRGASGTVSSARHADWRVQVAVKHLHIHTPLL
.::.. . .: : .. :. . : .::: ::.. :.: :
CCDS44 MAADPTELRLGSLPVFTRDDFEGDWRLVASGGFSQVFQARHRRWRTEYAIKCAPCLPP--
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 DSERKDV---LREAEILHKARFSYILPILGICNEPEFLGIVTEYMPNGSLNELLHRKTEY
:. .:: ..:: ..: .:..:. : :.:..: :::: :.: ::::...: ..
CCDS44 DAASSDVNYLIEEAAKMKKIKFQHIVSIYGVCKQP--LGIVMEFMANGSLEKVLSTHS--
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 PDVAWPLRFRILHEIALGVNYLHNMTPPLLHHDLKTQNILLDNEFHVKIADFGLSKWRMM
. : :::::.:: .:..:.::.. ::::: ::: :::::...::::.::::::: .
CCDS44 --LCWKLRFRIIHETSLAMNFLHSIKPPLLHLDLKPGNILLDSNMHVKISDFGLSKWMEQ
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 SLSQSRSSKSAPEGGTIIYMPPENYEPGQKSRASIKHDIYSYAVITWEVLSRKQPFEDVT
: .. .:: .: . :.::: . ..:. . :.:.::.:.. ::.:..:.:.
CCDS44 STRMQYIERSALRG-MLSYIPPEMFLESNKA-PGPKYDVYSFAIVIWELLTQKKPYSGF-
180 190 200 210 220
240 250 260 270 280 290
pF1KE0 NPLQIMYSVSQGHRPVINEESLPYDIPHRAR-MISLIESGWAQNPDERPSFLKCLIELEP
: ..:. :. : :: .. : . : .:. :..:.. : :.: .:: :: :: .
CCDS44 NMMMIIIRVAAGMRPSLQPVSDQW--PSEAQQMVDLMKRCWDQDPKKRPCFLDITIETDI
230 240 250 260 270 280
300 310 320 330 340 350
pF1KE0 VLRTFEEITFLEAVIQLKKTKLQSVSSAIHLCDKKKMELSLNIPVNHGPQEESCGSSQLH
.: ..:.. . . ..: : : . .::: : : .:. .. .
CCDS44 LL------SLLQSRVAVPESKA--------LARKVSCKLSLRQP---GEVNEDISQELMD
290 300 310 320 330
360 370 380 390 400 410
pF1KE0 ENSGSPETSRSLPAPQDNDFLSRKAQDCYFMKLHHCPGNHSWDSTISGSQRAAFCDHKTT
.::. .:.: . .... : . : .
CCDS44 SDSGN-YLKRALQLSDRKNLVPRDEELCIYENKVTPLHFLVAQGSVEQVRLLLAHEVDVD
340 350 360 370 380
540 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 20:31:10 2016 done: Sat Nov 5 20:31:11 2016
Total Scan time: 3.130 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]