FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1005, 186 aa
  1>>>pF1KE1005 186 - 186 aa - 186 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2989+/-0.00055; mu= 13.9741+/- 0.033
 mean_var=71.7286+/-14.394, 0's: 0 Z-trim(114.2): 6  B-trim: 0 in 0/53
 Lambda= 0.151436
 statistics sampled from 14788 (14791) to 14788 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.454), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS32905.2 FDX1L gene_id:112812|Hs108|chr19       ( 186) 1276 286.7 5.5e-78
CCDS8344.1 FDX1 gene_id:2230|Hs108|chr11           ( 184)  314 76.5   1e-14


>>CCDS32905.2 FDX1L gene_id:112812|Hs108|chr19            (186 aa)
 initn: 1276 init1: 1276 opt: 1276  Z-score: 1513.6  bits: 286.7 E(32554): 5.5e-78
Smith-Waterman score: 1276; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)

               10        20        30        40        50        60
pF1KE1 MHVMAASMARGGVSARVLLQAARGTWWNRPGGTSGSGEGVALGTTRKFQATGSRPAGEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MHVMAASMARGGVSARVLLQAARGTWWNRPGGTSGSGEGVALGTTRKFQATGSRPAGEED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 AGGPERPGDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AGGPERPGDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VSEDHLDLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITRNFYVDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VSEDHLDLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITRNFYVDG
              130       140       150       160       170       180

             
pF1KE1 HVPKPH
       ::::::
CCDS32 HVPKPH
             

>>CCDS8344.1 FDX1 gene_id:2230|Hs108|chr11                (184 aa)
 initn: 253 init1: 196 opt: 314  Z-score: 377.8  bits: 76.5 E(32554): 1e-14
Smith-Waterman score: 314; 34.7% identity (64.2% similar) in 173 aa overlap (5-171:3-169)

               10        20        30        40        50          
pF1KE1 MHVMAASMARGGVSARVLLQAARGTWWNRPGGTSGSGEGVALGTTRKFQATGSRPAGEE-
           ::. ::   .: ..: .  : : .. :. .::.     :  :.    ::  :..  
CCDS83   MAAAGGARLLRAASAVLGGPAGRWLHHAGSRAGSS-----GLLRNRGPGGSAEASRSL
                 10        20        30             40        50   

        60        70        80        90       100         110     
pF1KE1 --DAGGPERPGDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEG--ACEASLACS
         .: .     : ..: :..:.:. . ..:.:::..: .. ....:..:  :::..::::
CCDS83 SVSARARSSSEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACS
            60        70        80        90       100       110   

         120        130       140       150       160       170    
pF1KE1 TCHVYVSEDHL-DLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITR
       :::. . :::. . :    ..:.::::.:  : . ::::::: ::  ...    .:.   
CCDS83 TCHL-IFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVA
            120       130       140       150       160       170  

          180      
pF1KE1 NFYVDGHVPKPH
                   
CCDS83 DARQSIDVGKTS
            180    




186 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:21:52 2016 done: Sat Nov  5 13:21:52 2016
 Total Scan time:  2.060 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]