FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1006, 187 aa
  1>>>pF1KE1006 187 - 187 aa - 187 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5169+/-0.000626; mu= 11.5157+/- 0.038
 mean_var=59.7797+/-11.887, 0's: 0 Z-trim(110.4): 10  B-trim: 67 in 2/50
 Lambda= 0.165881
 statistics sampled from 11579 (11586) to 11579 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.356), width:  16
 Scan time:  2.050

The best scores are:                                      opt bits E(32554)
CCDS9187.1 PEBP1 gene_id:5037|Hs108|chr12          ( 187) 1303 319.6 7.1e-88
CCDS11733.2 MRPL38 gene_id:64978|Hs108|chr17       ( 380)  276 73.9 1.3e-13
CCDS43724.1 PEBP4 gene_id:157310|Hs108|chr8        ( 227)  273 73.1 1.4e-13


>>CCDS9187.1 PEBP1 gene_id:5037|Hs108|chr12               (187 aa)
 initn: 1303 init1: 1303 opt: 1303  Z-score: 1691.1  bits: 319.6 E(32554): 7.1e-88
Smith-Waterman score: 1303; 100.0% identity (100.0% similar) in 187 aa overlap (1-187:1-187)

               10        20        30        40        50        60
pF1KE1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL
              130       140       150       160       170       180

              
pF1KE1 YEQLSGK
       :::::::
CCDS91 YEQLSGK
              

>>CCDS11733.2 MRPL38 gene_id:64978|Hs108|chr17            (380 aa)
 initn: 215 init1: 149 opt: 276  Z-score: 357.7  bits: 73.9 E(32554): 1.3e-13
Smith-Waterman score: 276; 31.2% identity (64.1% similar) in 170 aa overlap (21-184:169-334)

                         10        20        30            40      
pF1KE1           MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDEL----GKVLTPTQV
                                     :. ::::.:: .  : .    :. .:::..
CCDS11 WERTCGPYHKQRLAEYYGLYRDLFHGATFVPRVPLHVAYAVGEDDLMPVYCGNEVTPTEA
      140       150       160       170       180       190        

         50        60        70        80        90       100      
pF1KE1 KNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDY
        . :  ..... . :.:.::.::. :.    .:   :. :.:..:. :: .. : :   :
CCDS11 AQAPE-VTYEA-EEGSLWTLLLTSLDG-HLLEPDA-EYLHWLLTNIPGNRVAEGQVTCPY
      200         210       220        230        240       250    

        110       120       130       140        150        160    
pF1KE1 VGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGDHRGK-FKVASFRKKY-ELRAPV
       .   : .:.:.:: ..:...::.:.  .:    .   .   . :.. .: ::. :  .:.
CCDS11 LPPFPARGSGIHRLAFLLFKQDQPIDFSEDARPSPCYQLAQRTFRTFDFYKKHQETMTPA
          260       270       280       290       300       310    

          170       180                                            
pF1KE1 AGTCYQAEWDDYVPKLYEQLSGK                                     
       . . .: .::: :  ...::                                        
CCDS11 GLSFFQCRWDDSVTYIFHQLLDMREPVFEFVRPPPYHPKQKRFPHRQPLRYLDRYRDSHE
          320       330       340       350       360       370    

>>CCDS43724.1 PEBP4 gene_id:157310|Hs108|chr8             (227 aa)
 initn: 239 init1: 170 opt: 273  Z-score: 357.5  bits: 73.1 E(32554): 1.4e-13
Smith-Waterman score: 274; 32.7% identity (59.1% similar) in 159 aa overlap (36-180:52-206)

          10        20        30        40           50            
pF1KE1 SKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKV---LTPTQVKNRPTSISW-------
                                     :::..   ..:   . :    ::       
CCDS43 GDEDENSPCAHEALLDEDTLFCQGLEVFYPELGNIGCKVVPDCNNYRQKITSWMEPIVKF
              30        40        50        60        70        80 

          60        70        80        90       100           110 
pF1KE1 DGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTV----LSDYVGSGP
        :  .:  : ::..::::::: .:. : :.:.::...:: :...: .    :: : . .:
CCDS43 PGAVDGATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKGADLKKGKIQGQELSAYQAPSP
              90       100       110       120       130       140 

             120       130       140       150       160       170 
pF1KE1 PKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQA
       :  .:.::: ..:: :.  .    :    . .  ::..:.  : ....:  : :.: ...
CCDS43 PAHSGFHRYQFFVYLQEGKVISLLP----KENKTRGSWKMDRFLNRFHLGEPEASTQFMT
             150       160           170       180       190       

             180                     
pF1KE1 EWDDYVPKLYEQLSGK              
       .  .  : :                     
CCDS43 QNYQDSPTLQAPRERASEPKHKNQAEIAAC
       200       210       220       




187 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:22:23 2016 done: Sat Nov  5 13:22:23 2016
 Total Scan time:  2.050 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]