Result of FASTA (ccds) for
pF1KE1026
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1026, 979 aa
1>>>pF1KE1026 979 - 979 aa - 979 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 15.4231+/-0.0013; mu= -21.0930+/- 0.079
mean_var=721.3926+/-146.360, 0's: 0 Z-trim(116.1): 34 B-trim: 0 in 0/55
Lambda= 0.047752
statistics sampled from 16646 (16670) to 16646 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.512), width: 16
Scan time: 5.330
The best scores are: opt bits E(32554)
CCDS12301.1 RFX1 gene_id:5989|Hs108|chr19 ( 979) 6473 461.7 3.1e-129
CCDS6449.1 RFX3 gene_id:5991|Hs108|chr9 ( 749) 2439 183.7 1.2e-45
CCDS6450.1 RFX3 gene_id:5991|Hs108|chr9 ( 707) 2378 179.5 2.1e-44
CCDS12158.1 RFX2 gene_id:5990|Hs108|chr19 ( 698) 2297 173.9 9.8e-43
CCDS12157.1 RFX2 gene_id:5990|Hs108|chr19 ( 723) 2263 171.6 5.1e-42
CCDS75809.1 RFX3 gene_id:5991|Hs108|chr9 ( 413) 1037 86.9 9e-17
>>CCDS12301.1 RFX1 gene_id:5989|Hs108|chr19 (979 aa)
initn: 6473 init1: 6473 opt: 6473 Z-score: 2433.5 bits: 461.7 E(32554): 3.1e-129
Smith-Waterman score: 6473; 99.9% identity (100.0% similar) in 979 aa overlap (1-979:1-979)
10 20 30 40 50 60
pF1KE1 MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIVVTVSEGAMRASETVSEAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIVVTVSEGAMRASETVSEAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 PGSTASQTGVPTQVVQQVQGTQQRLLVQTSVQAKPGHVSPLQLTNIQVPQQALPTQRLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PGSTASQTGVPTQVVQQVQGTQQRLLVQTSVQAKPGHVSPLQLTNIQVPQQALPTQRLVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 QSAAPGSKGGQVSLTVHGTQQVHSPPEQSPVQANSSSSKTAGAPTGTVPQQLQVHGVQQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QSAAPGSKGGQVSLTVHGTQQVHSPPEQSPVQANSSSSKTAGAPTGTVPQQLQVHGVQQS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 VPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQEVQQLQQVPVPHVYSSQVQYVEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQEVQQLQQVPVPHVYSSQVQYVEG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 GDASYTASAIRSSTYSYPETPLYTQTASTSYYEAAGTATQVSTPATSQAVASSGSMPMYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GDASYTASAIRSSTYSYPETPLYTQTASTSYYEAAGTATQVSTPATSQAVASSGSMPMYV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 SGSQVVASSASTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQGGYM
:::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SGSQVVASSTSTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQGGYM
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 LGSASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LGSASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE1 GKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE1 KPIQKMEGMTNGVAVGQQPSTGLSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KPIQKMEGMTNGVAVGQQPSTGLSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE1 GPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE1 RLPKAILVLLSKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RLPKAILVLLSKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLES
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE1 WLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNR
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE1 VDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSA
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE1 GFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE1 TPIAVMGEFANLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESPALGPETLEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TPIAVMGEFANLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESPALGPETLEPP
910 920 930 940 950 960
970
pF1KE1 AKLARTDARGLFVQALPSS
:::::::::::::::::::
CCDS12 AKLARTDARGLFVQALPSS
970
>>CCDS6449.1 RFX3 gene_id:5991|Hs108|chr9 (749 aa)
initn: 2571 init1: 1360 opt: 2439 Z-score: 933.1 bits: 183.7 E(32554): 1.2e-45
Smith-Waterman score: 2636; 61.2% identity (82.3% similar) in 677 aa overlap (268-937:29-684)
240 250 260 270 280 290
pF1KE1 QQSVPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQEVQQLQQVP-VPHVYSSQVQ
: .: : : :.:::.: : : ::: .:::
CCDS64 MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQTVQQVQHVYPAQVQ
10 20 30 40 50
300 310 320 330 340 350
pF1KE1 YVEGGDASYTASAIRSSTYSYPETPLYTQTASTSYYEAAGTATQVSTPATSQAVASSGSM
::::.:. :: .:::..:: : :: .:.:... .:... :...::.: ..:......:..
CCDS64 YVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQVTTVVSSHSMVGTGGI
60 70 80 90 100 110
360 370 380 390 400 410
pF1KE1 PMYVSGSQVVASSASTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQ
: :.:.:...:: :: :.. .:: . . :. .:.
CCDS64 QMGVTGGQLISSS------------------GGTYLIGNSMENSGHSVTHTTRASPATIE
120 130 140 150 160
420 430 440 450 460 470
pF1KE1 GGYMLGSASQSYS-HTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPV
. . :.. : : . . .::::::::::::::::::::: ::: ::::.::.::
CCDS64 MAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPV
170 180 190 200 210 220
480 490 500 510 520 530
pF1KE1 NAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFS
:::::::::::.:::::::::::::::::::::.:.: .::: ::.::.:.:::: ::..
CCDS64 NAASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQ
230 240 250 260 270 280
540 550 560 570 580 590
pF1KE1 QKQRLKPIQKMEGMTNG-VAVGQQPSTGLSD-ISAQVQQYQQFLDASRSLPDFTELDLQG
:::: ::.::..:...: .. ::: .:.. . . :: :..::::::::.::.: :.....
CCDS64 QKQRYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEISS
290 300 310 320 330 340
600 610 620 630 640 650
pF1KE1 KVLPEGVGPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLA
::.:. :::..: :::::::::.::.:::::.:.: ::.:::::. : :... ..
CCDS64 --LPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTIT
350 360 370 380 390
660 670 680 690 700 710
pF1KE1 VHD---EAEKRLPKAILVLLSKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQA
. : :.::::: :. : : : .:.: .::. .::.::::::::::::::::::::
CCDS64 ESSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQA
400 410 420 430 440 450
720 730 740 750 760 770
pF1KE1 IRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQ
:::::::::.::..:: :::..:...::::..::::::::::::::::::::::::::.:
CCDS64 IRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQ
460 470 480 490 500 510
780 790 800 810 820 830
pF1KE1 INQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVS
::::::::::::::::::::::::.:.: .::::: :::.:::::..:::::::::.:.
CCDS64 INQMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMM
520 530 540 550 560 570
840 850 860 870 880 890
pF1KE1 QVLKPYQGSAGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLI
:.::::.: .:::::. ::::::::::::::::::::::::::::::::::::::.::.
CCDS64 QALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLV
580 590 600 610 620 630
900 910 920 930 940 950
pF1KE1 EHRVAQAKGETPIAVMGEFANLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESP
::::::: :::::::::::..: ....: . :::: : : : ..::
CCDS64 EHRVAQATGETPIAVMGEFGDL-NAVSPGNLDKDEGSEVESEMDEELDDSSEPQAKREKT
640 650 660 670 680 690
960 970
pF1KE1 ALGPETLEPPAKLARTDARGLFVQALPSS
CCDS64 ELSQAFPVGCMQPVLETGVQPSLLNPIHSEHIVTSTQTIRQCSATGNTYTAV
700 710 720 730 740
>>CCDS6450.1 RFX3 gene_id:5991|Hs108|chr9 (707 aa)
initn: 2526 init1: 1356 opt: 2378 Z-score: 910.8 bits: 179.5 E(32554): 2.1e-44
Smith-Waterman score: 2575; 62.0% identity (82.7% similar) in 648 aa overlap (268-908:29-656)
240 250 260 270 280 290
pF1KE1 QQSVPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQEVQQLQQVP-VPHVYSSQVQ
: .: : : :.:::.: : : ::: .:::
CCDS64 MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQTVQQVQHVYPAQVQ
10 20 30 40 50
300 310 320 330 340 350
pF1KE1 YVEGGDASYTASAIRSSTYSYPETPLYTQTASTSYYEAAGTATQVSTPATSQAVASSGSM
::::.:. :: .:::..:: : :: .:.:... .:... :...::.: ..:......:..
CCDS64 YVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQVTTVVSSHSMVGTGGI
60 70 80 90 100 110
360 370 380 390 400 410
pF1KE1 PMYVSGSQVVASSASTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQ
: :.:.:...:: :: :.. .:: . . :. .:.
CCDS64 QMGVTGGQLISSS------------------GGTYLIGNSMENSGHSVTHTTRASPATIE
120 130 140 150 160
420 430 440 450 460 470
pF1KE1 GGYMLGSASQSYS-HTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPV
. . :.. : : . . .::::::::::::::::::::: ::: ::::.::.::
CCDS64 MAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPV
170 180 190 200 210 220
480 490 500 510 520 530
pF1KE1 NAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFS
:::::::::::.:::::::::::::::::::::.:.: .::: ::.::.:.:::: ::..
CCDS64 NAASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQ
230 240 250 260 270 280
540 550 560 570 580 590
pF1KE1 QKQRLKPIQKMEGMTNG-VAVGQQPSTGLSD-ISAQVQQYQQFLDASRSLPDFTELDLQG
:::: ::.::..:...: .. ::: .:.. . . :: :..::::::::.::.: :.....
CCDS64 QKQRYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEISS
290 300 310 320 330 340
600 610 620 630 640 650
pF1KE1 KVLPEGVGPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLA
::.:. :::..: :::::::::.::.:::::.:.: ::.:::::. : :... ..
CCDS64 --LPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTIT
350 360 370 380 390
660 670 680 690 700 710
pF1KE1 VHD---EAEKRLPKAILVLLSKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQA
. : :.::::: :. : : : .:.: .::. .::.::::::::::::::::::::
CCDS64 ESSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQA
400 410 420 430 440 450
720 730 740 750 760 770
pF1KE1 IRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQ
:::::::::.::..:: :::..:...::::..::::::::::::::::::::::::::.:
CCDS64 IRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQ
460 470 480 490 500 510
780 790 800 810 820 830
pF1KE1 INQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVS
::::::::::::::::::::::::.:.: .::::: :::.:::::..:::::::::.:.
CCDS64 INQMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMM
520 530 540 550 560 570
840 850 860 870 880 890
pF1KE1 QVLKPYQGSAGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLI
:.::::.: .:::::. ::::::::::::::::::::::::::::::::::::::.::.
CCDS64 QALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLV
580 590 600 610 620 630
900 910 920 930 940 950
pF1KE1 EHRVAQAKGETPIAVMGEFANLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESP
::::::: ::::::::::
CCDS64 EHRVAQATGETPIAVMGEVREAERAVTHWVIKNKPELHFSLNTLLIKTMVPNQVSLRARR
640 650 660 670 680 690
>>CCDS12158.1 RFX2 gene_id:5990|Hs108|chr19 (698 aa)
initn: 2538 init1: 1338 opt: 2297 Z-score: 880.7 bits: 173.9 E(32554): 9.8e-43
Smith-Waterman score: 2513; 56.6% identity (76.1% similar) in 735 aa overlap (241-967:25-690)
220 230 240 250 260 270
pF1KE1 VQANSSSSKTAGAPTGTVPQQLQVHGVQQSVPVTQERSVVQATPQAPKPGPVQPLTVQGL
::.. .: .:::. . :: . .::... .
CCDS12 MQNSEGGADSPASVALRPSAAAPPVPASPQRVLVQAASSNPKGAQMQPISLPRV
10 20 30 40 50
280 290 300 310 320
pF1KE1 QPVHVAQEVQQLQQVPVPHVYSSQVQYVEGGDASYTASAIRSSTYSY-PETPLYTQTAST
: .: :.:: :: ::: .:::::::::: :: .:::.. :.: :: .:. ....
CCDS12 Q--QVPQQVQ-----PVQHVYPAQVQYVEGGDAVYTNGAIRTA-YTYNPEPQMYAPSSTA
60 70 80 90 100
330 340 350 360 370 380
pF1KE1 SYYEAAGTATQVSTPATSQAVASSGSM---PMYVSGSQVVASSASTGAGASNSSGGGGSG
::.:: : : ::.. :.: .. : :: : :.:: .:.:
CCDS12 SYFEAPGGA-QVTVAASSPPAVPSHSMVGITMDVGGSPIVSS------------------
110 120 130 140
390 400 410 420 430 440
pF1KE1 GGGGGGGGGGGGGSGSTGGGGSGAGTYVIQGGYMLGSASQSYSHTTRASPATVQWLLDNY
::.:.:.:: . :. .: .::.:.::::.:::::::
CCDS12 -----------------------AGAYLIHGG--MDSTRHSLAHTSRSSPATLQWLLDNY
150 160 170 180
450 460 470 480 490 500
pF1KE1 ETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHY
:::::::::::.:: ::: ::::.::.:::::::::::::::::::::::::::::::::
CCDS12 ETAEGVSLPRSSLYNHYLRHCQEHKLDPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHY
190 200 210 220 230 240
510 520 530 540 550 560
pF1KE1 YGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQPSTGLSDI
::.:.: .::: ::.:: :.:::: ::. :: : .: :: ... .. . . :: . .
CCDS12 YGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLHSTPEQTM
250 260 270 280 290 300
570 580 590 600 610 620
pF1KE1 SAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHCEAIVDVMVNL
..: :..::..:.:. .:.: :: . .: .:: :.::.:..::.:::: :::..::
CCDS12 AVQSQHHQQYIDVSHVFPEFPAPDLGSFLLQDGVTLHDVKALQLVYRRHCEATVDVVMNL
310 320 330 340 350 360
630 640 650 660 670 680
pF1KE1 QFTLVETLWKTFWRYNLSQPSEAP---PLAVHDEAEKRLPKAILVLLSKFEPVLQWTKHC
:: .: :: .:: . :. :..: : . .: ::: :. : . .:.:.: . :
CCDS12 QFHYIEKLWLSFWNSKASS-SDGPTSLPASDEDPEGAVLPKDKLISLCQCDPILRWMRSC
370 380 390 400 410 420
690 700 710 720 730 740
pF1KE1 DNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGA
:..:::.::::::::::::.::.:::::::::::::.:::.:: ..:......::....:
CCDS12 DHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVIQTKVGVVSA
430 440 450 460 470 480
750 760 770 780 790 800
pF1KE1 FAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQR
:::::::::::::::::::::::::.:::::::::::::::::::::::::.::. ::::
CCDS12 FAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQCEESVVQR
490 500 510 520 530 540
810 820 830 840 850 860
pF1KE1 LEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFYSSMVIRD
::::::.:::::.::.:::.:::.::.:::: . :: .:::::. :::::::::::::::
CCDS12 LEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWSFYSSMVIRD
550 560 570 580 590 600
870 880 890 900 910 920
pF1KE1 LTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFANLAT-SLNPLDPD
:::::::::::::::::::::::.::.:::::.: ::::::::::: .::. ::. : :
CCDS12 LTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMGEFNDLASLSLTLL--D
610 620 630 640 650
930 940 950 960 970
pF1KE1 KDEEEEEEEESEDELPQDISLAAGGESPALGPETLEPPAKLARTDARGLFVQALPSS
::. .:.. :: :: .. .:: :: .: :.:
CCDS12 KDDMGDEQRGSE----------AGPDARSLG----EPLVKRERSDPNHSLQGI
660 670 680 690
>>CCDS12157.1 RFX2 gene_id:5990|Hs108|chr19 (723 aa)
initn: 2481 init1: 1338 opt: 2263 Z-score: 867.8 bits: 171.6 E(32554): 5.1e-42
Smith-Waterman score: 2465; 56.1% identity (76.3% similar) in 735 aa overlap (241-967:25-715)
220 230 240 250 260 270
pF1KE1 VQANSSSSKTAGAPTGTVPQQLQVHGVQQSVPVTQERSVVQATPQAPKPGPVQPLTVQGL
::.. .: .:::. . :: . .::... .
CCDS12 MQNSEGGADSPASVALRPSAAAPPVPASPQRVLVQAASSNPKGAQMQPISLPRV
10 20 30 40 50
280 290 300 310 320
pF1KE1 QPVHVAQEVQQLQQVPVPHVYSSQVQYVEGGDASYTASAIRSSTYSY-PETPLYTQTAST
: .: :.:: :: ::: .:::::::::: :: .:::.. :.: :: .:. ....
CCDS12 Q--QVPQQVQ-----PVQHVYPAQVQYVEGGDAVYTNGAIRTA-YTYNPEPQMYAPSSTA
60 70 80 90 100
330 340 350 360 370 380
pF1KE1 SYYEAAGTATQVSTPATSQAVASSGSM---PMYVSGSQVVASSASTGAGASNSSGGGGSG
::.:: : : ::.. :.: .. : :: : :.:: .:.: ::: :: :
CCDS12 SYFEAPGGA-QVTVAASSPPAVPSHSMVGITMDVGGSPIVSS-----AGAYLIHGGMDST
110 120 130 140 150 160
390 400 410 420 430 440
pF1KE1 GGGGGGGGGGGGGSGSTGGGGSGAGTYVIQGGYMLGSASQSYSHTTRASPATVQWLLDNY
. . :. .. .. ..:.. : .. :: . . .:::::::
CCDS12 RH----------SLAHTSRSSPATLEMAIEN---LQKSEGITSHKSGLLNSHLQWLLDNY
170 180 190 200
450 460 470 480 490 500
pF1KE1 ETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHY
:::::::::::.:: ::: ::::.::.:::::::::::::::::::::::::::::::::
CCDS12 ETAEGVSLPRSSLYNHYLRHCQEHKLDPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHY
210 220 230 240 250 260
510 520 530 540 550 560
pF1KE1 YGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQPSTGLSDI
::.:.: .::: ::.:: :.:::: ::. :: : .: :: ... .. . . :: . .
CCDS12 YGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLHSTPEQTM
270 280 290 300 310 320
570 580 590 600 610 620
pF1KE1 SAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHCEAIVDVMVNL
..: :..::..:.:. .:.: :: . .: .:: :.::.:..::.:::: :::..::
CCDS12 AVQSQHHQQYIDVSHVFPEFPAPDLGSFLLQDGVTLHDVKALQLVYRRHCEATVDVVMNL
330 340 350 360 370 380
630 640 650 660 670 680
pF1KE1 QFTLVETLWKTFWRYNLSQPSEAP---PLAVHDEAEKRLPKAILVLLSKFEPVLQWTKHC
:: .: :: .:: . :. :..: : . .: ::: :. : . .:.:.: . :
CCDS12 QFHYIEKLWLSFWNSKASS-SDGPTSLPASDEDPEGAVLPKDKLISLCQCDPILRWMRSC
390 400 410 420 430 440
690 700 710 720 730 740
pF1KE1 DNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGA
:..:::.::::::::::::.::.:::::::::::::.:::.:: ..:......::....:
CCDS12 DHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVIQTKVGVVSA
450 460 470 480 490 500
750 760 770 780 790 800
pF1KE1 FAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQR
:::::::::::::::::::::::::.:::::::::::::::::::::::::.::. ::::
CCDS12 FAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQCEESVVQR
510 520 530 540 550 560
810 820 830 840 850 860
pF1KE1 LEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFYSSMVIRD
::::::.:::::.::.:::.:::.::.:::: . :: .:::::. :::::::::::::::
CCDS12 LEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWSFYSSMVIRD
570 580 590 600 610 620
870 880 890 900 910 920
pF1KE1 LTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFANLAT-SLNPLDPD
:::::::::::::::::::::::.::.:::::.: ::::::::::: .::. ::. : :
CCDS12 LTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMGEFNDLASLSLTLL--D
630 640 650 660 670 680
930 940 950 960 970
pF1KE1 KDEEEEEEEESEDELPQDISLAAGGESPALGPETLEPPAKLARTDARGLFVQALPSS
::. .:.. :: :: .. .:: :: .: :.:
CCDS12 KDDMGDEQRGSE----------AGPDARSLG----EPLVKRERSDPNHSLQGI
690 700 710 720
>>CCDS75809.1 RFX3 gene_id:5991|Hs108|chr9 (413 aa)
initn: 1396 init1: 846 opt: 1037 Z-score: 414.6 bits: 86.9 E(32554): 9e-17
Smith-Waterman score: 1239; 51.9% identity (77.1% similar) in 385 aa overlap (268-648:29-393)
240 250 260 270 280 290
pF1KE1 QQSVPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQEVQQLQQVP-VPHVYSSQVQ
: .: : : :.:::.: : : ::: .:::
CCDS75 MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQTVQQVQHVYPAQVQ
10 20 30 40 50
300 310 320 330 340 350
pF1KE1 YVEGGDASYTASAIRSSTYSYPETPLYTQTASTSYYEAAGTATQVSTPATSQAVASSGSM
::::.:. :: .:::..:: : :: .:.:... .:... :...::.: ..:......:..
CCDS75 YVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQVTTVVSSHSMVGTGGI
60 70 80 90 100 110
360 370 380 390 400 410
pF1KE1 PMYVSGSQVVASSASTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQ
: :.:.:...:: :: :.. .:: . . :. .:.
CCDS75 QMGVTGGQLISSS------------------GGTYLIGNSMENSGHSVTHTTRASPATIE
120 130 140 150 160
420 430 440 450 460 470
pF1KE1 GGYMLGSASQSYS-HTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPV
. . :.. : : . . .::::::::::::::::::::: ::: ::::.::.::
CCDS75 MAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPV
170 180 190 200 210 220
480 490 500 510 520 530
pF1KE1 NAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFS
:::::::::::.:::::::::::::::::::::.:.: .::: ::.::.:.:::: ::..
CCDS75 NAASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQ
230 240 250 260 270 280
540 550 560 570 580 590
pF1KE1 QKQRLKPIQKMEGMTNG-VAVGQQPSTGLSD-ISAQVQQYQQFLDASRSLPDFTELDLQG
:::: ::.::..:...: .. ::: .:.. . . :: :..::::::::.::.: :.....
CCDS75 QKQRYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEISS
290 300 310 320 330 340
600 610 620 630 640 650
pF1KE1 KVLPEGVGPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLA
::.:. :::..: :::::::::.::.:::::.:.: ::.:::::. : :..
CCDS75 --LPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTIT
350 360 370 380 390
660 670 680 690 700 710
pF1KE1 VHDEAEKRLPKAILVLLSKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRN
CCDS75 ESRSESTSFPIHFHG
400 410
979 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:27:59 2016 done: Sat Nov 5 07:28:00 2016
Total Scan time: 5.330 Total Display time: 0.140
Function used was FASTA [36.3.4 Apr, 2011]