Result of FASTA (omim) for
pF1KE1026
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1026, 979 aa
1>>>pF1KE1026 979 - 979 aa - 979 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 17.1524+/-0.000566; mu= -31.7690+/- 0.036
mean_var=832.9317+/-169.272, 0's: 0 Z-trim(124.1): 38 B-trim: 0 in 0/59
Lambda= 0.044440
statistics sampled from 44978 (45028) to 44978 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.528), width: 16
Scan time: 16.820
The best scores are: opt bits E(85289)
NP_002909 (OMIM: 600006) MHC class II regulatory f ( 979) 6473 431.1 1.4e-119
XP_011526471 (OMIM: 600006) PREDICTED: MHC class I ( 980) 4695 317.1 2.9e-85
XP_011526472 (OMIM: 600006) PREDICTED: MHC class I ( 980) 4695 317.1 2.9e-85
XP_011526467 (OMIM: 600006) PREDICTED: MHC class I (1089) 4695 317.1 3.1e-85
XP_011526468 (OMIM: 600006) PREDICTED: MHC class I (1089) 4695 317.1 3.1e-85
XP_011526469 (OMIM: 600006) PREDICTED: MHC class I (1089) 4695 317.1 3.1e-85
XP_011526470 (OMIM: 600006) PREDICTED: MHC class I ( 991) 3749 256.5 5.2e-67
XP_016870490 (OMIM: 601337) PREDICTED: transcripti ( 724) 2484 175.2 1.1e-42
NP_001269045 (OMIM: 601337) transcription factor R ( 749) 2439 172.4 8.1e-42
NP_602304 (OMIM: 601337) transcription factor RFX3 ( 749) 2439 172.4 8.1e-42
XP_011516302 (OMIM: 601337) PREDICTED: transcripti ( 745) 2426 171.5 1.4e-41
XP_006716903 (OMIM: 601337) PREDICTED: transcripti ( 780) 2383 168.8 1e-40
XP_011516301 (OMIM: 601337) PREDICTED: transcripti ( 770) 2381 168.7 1.1e-40
XP_006716907 (OMIM: 601337) PREDICTED: transcripti ( 770) 2381 168.7 1.1e-40
XP_006716908 (OMIM: 601337) PREDICTED: transcripti ( 770) 2381 168.7 1.1e-40
XP_016870489 (OMIM: 601337) PREDICTED: transcripti ( 770) 2381 168.7 1.1e-40
XP_006716906 (OMIM: 601337) PREDICTED: transcripti ( 770) 2381 168.7 1.1e-40
XP_011516300 (OMIM: 601337) PREDICTED: transcripti ( 770) 2381 168.7 1.1e-40
NP_002910 (OMIM: 601337) transcription factor RFX3 ( 707) 2378 168.4 1.2e-40
XP_011516303 (OMIM: 601337) PREDICTED: transcripti ( 687) 2342 166.1 5.6e-40
XP_016882597 (OMIM: 142765) PREDICTED: DNA-binding ( 653) 2297 163.2 4e-39
NP_602309 (OMIM: 142765) DNA-binding protein RFX2 ( 698) 2297 163.2 4.2e-39
XP_011526473 (OMIM: 142765) PREDICTED: DNA-binding ( 723) 2263 161.1 2e-38
NP_000626 (OMIM: 142765) DNA-binding protein RFX2 ( 723) 2263 161.1 2e-38
XP_011526474 (OMIM: 142765) PREDICTED: DNA-binding ( 687) 2247 160.0 3.8e-38
XP_016882596 (OMIM: 142765) PREDICTED: DNA-binding ( 678) 2238 159.4 5.7e-38
XP_006716910 (OMIM: 601337) PREDICTED: transcripti ( 492) 1742 127.5 1.7e-28
XP_016870491 (OMIM: 601337) PREDICTED: transcripti ( 501) 1736 127.2 2.2e-28
NP_001269046 (OMIM: 601337) transcription factor R ( 413) 1037 82.3 5.9e-15
NP_115880 (OMIM: 603958) transcription factor RFX4 ( 641) 568 52.4 9.3e-06
>>NP_002909 (OMIM: 600006) MHC class II regulatory facto (979 aa)
initn: 6473 init1: 6473 opt: 6473 Z-score: 2267.9 bits: 431.1 E(85289): 1.4e-119
Smith-Waterman score: 6473; 99.9% identity (100.0% similar) in 979 aa overlap (1-979:1-979)
10 20 30 40 50 60
pF1KE1 MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIVVTVSEGAMRASETVSEAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIVVTVSEGAMRASETVSEAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 PGSTASQTGVPTQVVQQVQGTQQRLLVQTSVQAKPGHVSPLQLTNIQVPQQALPTQRLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PGSTASQTGVPTQVVQQVQGTQQRLLVQTSVQAKPGHVSPLQLTNIQVPQQALPTQRLVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 QSAAPGSKGGQVSLTVHGTQQVHSPPEQSPVQANSSSSKTAGAPTGTVPQQLQVHGVQQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QSAAPGSKGGQVSLTVHGTQQVHSPPEQSPVQANSSSSKTAGAPTGTVPQQLQVHGVQQS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 VPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQEVQQLQQVPVPHVYSSQVQYVEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQEVQQLQQVPVPHVYSSQVQYVEG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 GDASYTASAIRSSTYSYPETPLYTQTASTSYYEAAGTATQVSTPATSQAVASSGSMPMYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GDASYTASAIRSSTYSYPETPLYTQTASTSYYEAAGTATQVSTPATSQAVASSGSMPMYV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 SGSQVVASSASTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQGGYM
:::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SGSQVVASSTSTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQGGYM
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 LGSASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LGSASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE1 GKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE1 KPIQKMEGMTNGVAVGQQPSTGLSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KPIQKMEGMTNGVAVGQQPSTGLSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE1 GPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE1 RLPKAILVLLSKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RLPKAILVLLSKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLES
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE1 WLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 WLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNR
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE1 VDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSA
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE1 GFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE1 TPIAVMGEFANLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESPALGPETLEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TPIAVMGEFANLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESPALGPETLEPP
910 920 930 940 950 960
970
pF1KE1 AKLARTDARGLFVQALPSS
:::::::::::::::::::
NP_002 AKLARTDARGLFVQALPSS
970
>>XP_011526471 (OMIM: 600006) PREDICTED: MHC class II re (980 aa)
initn: 4600 init1: 4600 opt: 4695 Z-score: 1651.8 bits: 317.1 E(85289): 2.9e-85
Smith-Waterman score: 5457; 88.7% identity (88.8% similar) in 980 aa overlap (110-979:1-980)
80 90 100 110 120 130
pF1KE1 AVPAPSQPTGAPTPSPAPQQYIVVTVSEGAMRASETVSEASPGSTASQTGVPTQVVQQVQ
::::::::::::::::::::::::::::::
XP_011 MRASETVSEASPGSTASQTGVPTQVVQQVQ
10 20 30
140 150 160 170 180 190
pF1KE1 GTQQRLLVQTSVQAKPGHVSPLQLTNIQVPQQALPTQRLVVQSAAPGSKGGQVSLTVHGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GTQQRLLVQTSVQAKPGHVSPLQLTNIQVPQQALPTQRLVVQSAAPGSKGGQVSLTVHGT
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE1 QQVHSPPEQSPVQANSSSSKTAGAPTGTVPQQLQVHGVQQSVPVTQERSVVQATPQAPKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QQVHSPPEQSPVQANSSSSKTAGAPTGTVPQQLQVHGVQQSVPVTQERSVVQATPQAPKP
100 110 120 130 140 150
260 270
pF1KE1 GPVQPLTVQGLQPVHVAQE-----------------------------------------
:::::::::::::::::::
XP_011 GPVQPLTVQGLQPVHVAQESSGSQFPARKAEQRDPRPTPPPEPPPRPPACSGEAPQLGSP
160 170 180 190 200 210
pF1KE1 ------------------------------------------------------------
XP_011 EPPPPHYEPGAEQWVELVGVLPPHLLLPQQKVVFEPLSRLPARASPDQRVRIQRIPQVLV
220 230 240 250 260 270
280 290 300 310 320
pF1KE1 ---------VQQLQQVPVPHVYSSQVQYVEGGDASYTASAIRSSTYSYPETPLYTQTAST
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FGTAATALKVQQLQQVPVPHVYSSQVQYVEGGDASYTASAIRSSTYSYPETPLYTQTAST
280 290 300 310 320 330
330 340 350 360 370 380
pF1KE1 SYYEAAGTATQVSTPATSQAVASSGSMPMYVSGSQVVASSASTGAGASNSSGGGGSGGGG
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
XP_011 SYYEAAGTATQVSTPATSQAVASSGSMPMYVSGSQVVASSTSTGAGASNSSGGGGSGGGG
340 350 360 370 380 390
390 400 410 420 430 440
pF1KE1 GGGGGGGGGGSGSTGGGGSGAGTYVIQGGYMLGSASQSYSHTTRASPATVQWLLDNYETA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGGGGGGGGGSGSTGGGGSGAGTYVIQGGYMLGSASQSYSHTTRASPATVQWLLDNYETA
400 410 420 430 440 450
450 460 470 480 490 500
pF1KE1 EGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGL
460 470 480 490 500 510
510 520 530 540 550 560
pF1KE1 RIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQPSTGLSDISAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQPSTGLSDISAQ
520 530 540 550 560 570
570 580 590 600 610 620
pF1KE1 VQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHCEAIVDVMVNLQFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHCEAIVDVMVNLQFT
580 590 600 610 620 630
630 640 650 660 670 680
pF1KE1 LVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPVLQWTKHCDNVLYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPVLQWTKHCDNVLYQ
640 650 660 670 680 690
690 700 710 720 730 740
pF1KE1 GLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLR
700 710 720 730 740 750
750 760 770 780 790 800
pF1KE1 RYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFK
760 770 780 790 800 810
810 820 830 840 850 860
pF1KE1 VTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFYSSMVIRDLTLRSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFYSSMVIRDLTLRSA
820 830 840 850 860 870
870 880 890 900 910 920
pF1KE1 ASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFANLATSLNPLDPDKDEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFANLATSLNPLDPDKDEEEEE
880 890 900 910 920 930
930 940 950 960 970
pF1KE1 EEESEDELPQDISLAAGGESPALGPETLEPPAKLARTDARGLFVQALPSS
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEESEDELPQDISLAAGGESPALGPETLEPPAKLARTDARGLFVQALPSS
940 950 960 970 980
>>XP_011526472 (OMIM: 600006) PREDICTED: MHC class II re (980 aa)
initn: 4600 init1: 4600 opt: 4695 Z-score: 1651.8 bits: 317.1 E(85289): 2.9e-85
Smith-Waterman score: 5457; 88.7% identity (88.8% similar) in 980 aa overlap (110-979:1-980)
80 90 100 110 120 130
pF1KE1 AVPAPSQPTGAPTPSPAPQQYIVVTVSEGAMRASETVSEASPGSTASQTGVPTQVVQQVQ
::::::::::::::::::::::::::::::
XP_011 MRASETVSEASPGSTASQTGVPTQVVQQVQ
10 20 30
140 150 160 170 180 190
pF1KE1 GTQQRLLVQTSVQAKPGHVSPLQLTNIQVPQQALPTQRLVVQSAAPGSKGGQVSLTVHGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GTQQRLLVQTSVQAKPGHVSPLQLTNIQVPQQALPTQRLVVQSAAPGSKGGQVSLTVHGT
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE1 QQVHSPPEQSPVQANSSSSKTAGAPTGTVPQQLQVHGVQQSVPVTQERSVVQATPQAPKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QQVHSPPEQSPVQANSSSSKTAGAPTGTVPQQLQVHGVQQSVPVTQERSVVQATPQAPKP
100 110 120 130 140 150
260 270
pF1KE1 GPVQPLTVQGLQPVHVAQE-----------------------------------------
:::::::::::::::::::
XP_011 GPVQPLTVQGLQPVHVAQESSGSQFPARKAEQRDPRPTPPPEPPPRPPACSGEAPQLGSP
160 170 180 190 200 210
pF1KE1 ------------------------------------------------------------
XP_011 EPPPPHYEPGAEQWVELVGVLPPHLLLPQQKVVFEPLSRLPARASPDQRVRIQRIPQVLV
220 230 240 250 260 270
280 290 300 310 320
pF1KE1 ---------VQQLQQVPVPHVYSSQVQYVEGGDASYTASAIRSSTYSYPETPLYTQTAST
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FGTAATALKVQQLQQVPVPHVYSSQVQYVEGGDASYTASAIRSSTYSYPETPLYTQTAST
280 290 300 310 320 330
330 340 350 360 370 380
pF1KE1 SYYEAAGTATQVSTPATSQAVASSGSMPMYVSGSQVVASSASTGAGASNSSGGGGSGGGG
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
XP_011 SYYEAAGTATQVSTPATSQAVASSGSMPMYVSGSQVVASSTSTGAGASNSSGGGGSGGGG
340 350 360 370 380 390
390 400 410 420 430 440
pF1KE1 GGGGGGGGGGSGSTGGGGSGAGTYVIQGGYMLGSASQSYSHTTRASPATVQWLLDNYETA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGGGGGGGGGSGSTGGGGSGAGTYVIQGGYMLGSASQSYSHTTRASPATVQWLLDNYETA
400 410 420 430 440 450
450 460 470 480 490 500
pF1KE1 EGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGL
460 470 480 490 500 510
510 520 530 540 550 560
pF1KE1 RIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQPSTGLSDISAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQPSTGLSDISAQ
520 530 540 550 560 570
570 580 590 600 610 620
pF1KE1 VQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHCEAIVDVMVNLQFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHCEAIVDVMVNLQFT
580 590 600 610 620 630
630 640 650 660 670 680
pF1KE1 LVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPVLQWTKHCDNVLYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPVLQWTKHCDNVLYQ
640 650 660 670 680 690
690 700 710 720 730 740
pF1KE1 GLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLR
700 710 720 730 740 750
750 760 770 780 790 800
pF1KE1 RYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFK
760 770 780 790 800 810
810 820 830 840 850 860
pF1KE1 VTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFYSSMVIRDLTLRSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFYSSMVIRDLTLRSA
820 830 840 850 860 870
870 880 890 900 910 920
pF1KE1 ASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFANLATSLNPLDPDKDEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFANLATSLNPLDPDKDEEEEE
880 890 900 910 920 930
930 940 950 960 970
pF1KE1 EEESEDELPQDISLAAGGESPALGPETLEPPAKLARTDARGLFVQALPSS
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEESEDELPQDISLAAGGESPALGPETLEPPAKLARTDARGLFVQALPSS
940 950 960 970 980
>>XP_011526467 (OMIM: 600006) PREDICTED: MHC class II re (1089 aa)
initn: 4600 init1: 4600 opt: 4695 Z-score: 1651.2 bits: 317.1 E(85289): 3.1e-85
Smith-Waterman score: 5668; 89.0% identity (89.1% similar) in 1011 aa overlap (79-979:79-1089)
50 60 70 80 90 100
pF1KE1 TPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIVVTVSEG
::::::::::::::::::::::::::::::
XP_011 TPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIVVTVSEG
50 60 70 80 90 100
110 120 130 140 150 160
pF1KE1 AMRASETVSEASPGSTASQTGVPTQVVQQVQGTQQRLLVQTSVQAKPGHVSPLQLTNIQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AMRASETVSEASPGSTASQTGVPTQVVQQVQGTQQRLLVQTSVQAKPGHVSPLQLTNIQV
110 120 130 140 150 160
170 180 190 200 210 220
pF1KE1 PQQALPTQRLVVQSAAPGSKGGQVSLTVHGTQQVHSPPEQSPVQANSSSSKTAGAPTGTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PQQALPTQRLVVQSAAPGSKGGQVSLTVHGTQQVHSPPEQSPVQANSSSSKTAGAPTGTV
170 180 190 200 210 220
230 240 250 260 270
pF1KE1 PQQLQVHGVQQSVPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQE----------
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PQQLQVHGVQQSVPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQESSGSQFPARK
230 240 250 260 270 280
pF1KE1 ------------------------------------------------------------
XP_011 AEQRDPRPTPPPEPPPRPPACSGEAPQLGSPEPPPPHYEPGAEQWVELVGVLPPHLLLPQ
290 300 310 320 330 340
280 290
pF1KE1 ----------------------------------------VQQLQQVPVPHVYSSQVQYV
::::::::::::::::::::
XP_011 QKVVFEPLSRLPARASPDQRVRIQRIPQVLVFGTAATALKVQQLQQVPVPHVYSSQVQYV
350 360 370 380 390 400
300 310 320 330 340 350
pF1KE1 EGGDASYTASAIRSSTYSYPETPLYTQTASTSYYEAAGTATQVSTPATSQAVASSGSMPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EGGDASYTASAIRSSTYSYPETPLYTQTASTSYYEAAGTATQVSTPATSQAVASSGSMPM
410 420 430 440 450 460
360 370 380 390 400 410
pF1KE1 YVSGSQVVASSASTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQGG
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YVSGSQVVASSTSTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQGG
470 480 490 500 510 520
420 430 440 450 460 470
pF1KE1 YMLGSASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YMLGSASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAA
530 540 550 560 570 580
480 490 500 510 520 530
pF1KE1 SFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQ
590 600 610 620 630 640
540 550 560 570 580 590
pF1KE1 RLKPIQKMEGMTNGVAVGQQPSTGLSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RLKPIQKMEGMTNGVAVGQQPSTGLSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPE
650 660 670 680 690 700
600 610 620 630 640 650
pF1KE1 GVGPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVGPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEA
710 720 730 740 750 760
660 670 680 690 700 710
pF1KE1 EKRLPKAILVLLSKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKRLPKAILVLLSKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSL
770 780 790 800 810 820
720 730 740 750 760 770
pF1KE1 ESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDL
830 840 850 860 870 880
780 790 800 810 820 830
pF1KE1 NRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQG
890 900 910 920 930 940
840 850 860 870 880 890
pF1KE1 SAGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SAGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAK
950 960 970 980 990 1000
900 910 920 930 940 950
pF1KE1 GETPIAVMGEFANLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESPALGPETLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GETPIAVMGEFANLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESPALGPETLE
1010 1020 1030 1040 1050 1060
960 970
pF1KE1 PPAKLARTDARGLFVQALPSS
:::::::::::::::::::::
XP_011 PPAKLARTDARGLFVQALPSS
1070 1080
>--
initn: 575 init1: 575 opt: 575 Z-score: 223.7 bits: 53.0 E(85289): 1e-05
Smith-Waterman score: 575; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78)
10 20 30 40 50 60
pF1KE1 MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIVVTVSEGAMRASETVSEAS
::::::::::::::::::
XP_011 PQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIVVTVSEGAMRASETVSEAS
70 80 90 100 110 120
>>XP_011526468 (OMIM: 600006) PREDICTED: MHC class II re (1089 aa)
initn: 4600 init1: 4600 opt: 4695 Z-score: 1651.2 bits: 317.1 E(85289): 3.1e-85
Smith-Waterman score: 5668; 89.0% identity (89.1% similar) in 1011 aa overlap (79-979:79-1089)
50 60 70 80 90 100
pF1KE1 TPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIVVTVSEG
::::::::::::::::::::::::::::::
XP_011 TPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIVVTVSEG
50 60 70 80 90 100
110 120 130 140 150 160
pF1KE1 AMRASETVSEASPGSTASQTGVPTQVVQQVQGTQQRLLVQTSVQAKPGHVSPLQLTNIQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AMRASETVSEASPGSTASQTGVPTQVVQQVQGTQQRLLVQTSVQAKPGHVSPLQLTNIQV
110 120 130 140 150 160
170 180 190 200 210 220
pF1KE1 PQQALPTQRLVVQSAAPGSKGGQVSLTVHGTQQVHSPPEQSPVQANSSSSKTAGAPTGTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PQQALPTQRLVVQSAAPGSKGGQVSLTVHGTQQVHSPPEQSPVQANSSSSKTAGAPTGTV
170 180 190 200 210 220
230 240 250 260 270
pF1KE1 PQQLQVHGVQQSVPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQE----------
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PQQLQVHGVQQSVPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQESSGSQFPARK
230 240 250 260 270 280
pF1KE1 ------------------------------------------------------------
XP_011 AEQRDPRPTPPPEPPPRPPACSGEAPQLGSPEPPPPHYEPGAEQWVELVGVLPPHLLLPQ
290 300 310 320 330 340
280 290
pF1KE1 ----------------------------------------VQQLQQVPVPHVYSSQVQYV
::::::::::::::::::::
XP_011 QKVVFEPLSRLPARASPDQRVRIQRIPQVLVFGTAATALKVQQLQQVPVPHVYSSQVQYV
350 360 370 380 390 400
300 310 320 330 340 350
pF1KE1 EGGDASYTASAIRSSTYSYPETPLYTQTASTSYYEAAGTATQVSTPATSQAVASSGSMPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EGGDASYTASAIRSSTYSYPETPLYTQTASTSYYEAAGTATQVSTPATSQAVASSGSMPM
410 420 430 440 450 460
360 370 380 390 400 410
pF1KE1 YVSGSQVVASSASTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQGG
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YVSGSQVVASSTSTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQGG
470 480 490 500 510 520
420 430 440 450 460 470
pF1KE1 YMLGSASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YMLGSASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAA
530 540 550 560 570 580
480 490 500 510 520 530
pF1KE1 SFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQ
590 600 610 620 630 640
540 550 560 570 580 590
pF1KE1 RLKPIQKMEGMTNGVAVGQQPSTGLSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RLKPIQKMEGMTNGVAVGQQPSTGLSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPE
650 660 670 680 690 700
600 610 620 630 640 650
pF1KE1 GVGPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVGPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEA
710 720 730 740 750 760
660 670 680 690 700 710
pF1KE1 EKRLPKAILVLLSKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKRLPKAILVLLSKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSL
770 780 790 800 810 820
720 730 740 750 760 770
pF1KE1 ESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDL
830 840 850 860 870 880
780 790 800 810 820 830
pF1KE1 NRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQG
890 900 910 920 930 940
840 850 860 870 880 890
pF1KE1 SAGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SAGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAK
950 960 970 980 990 1000
900 910 920 930 940 950
pF1KE1 GETPIAVMGEFANLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESPALGPETLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GETPIAVMGEFANLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESPALGPETLE
1010 1020 1030 1040 1050 1060
960 970
pF1KE1 PPAKLARTDARGLFVQALPSS
:::::::::::::::::::::
XP_011 PPAKLARTDARGLFVQALPSS
1070 1080
>--
initn: 575 init1: 575 opt: 575 Z-score: 223.7 bits: 53.0 E(85289): 1e-05
Smith-Waterman score: 575; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78)
10 20 30 40 50 60
pF1KE1 MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIVVTVSEGAMRASETVSEAS
::::::::::::::::::
XP_011 PQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIVVTVSEGAMRASETVSEAS
70 80 90 100 110 120
>>XP_011526469 (OMIM: 600006) PREDICTED: MHC class II re (1089 aa)
initn: 4600 init1: 4600 opt: 4695 Z-score: 1651.2 bits: 317.1 E(85289): 3.1e-85
Smith-Waterman score: 5668; 89.0% identity (89.1% similar) in 1011 aa overlap (79-979:79-1089)
50 60 70 80 90 100
pF1KE1 TPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIVVTVSEG
::::::::::::::::::::::::::::::
XP_011 TPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIVVTVSEG
50 60 70 80 90 100
110 120 130 140 150 160
pF1KE1 AMRASETVSEASPGSTASQTGVPTQVVQQVQGTQQRLLVQTSVQAKPGHVSPLQLTNIQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AMRASETVSEASPGSTASQTGVPTQVVQQVQGTQQRLLVQTSVQAKPGHVSPLQLTNIQV
110 120 130 140 150 160
170 180 190 200 210 220
pF1KE1 PQQALPTQRLVVQSAAPGSKGGQVSLTVHGTQQVHSPPEQSPVQANSSSSKTAGAPTGTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PQQALPTQRLVVQSAAPGSKGGQVSLTVHGTQQVHSPPEQSPVQANSSSSKTAGAPTGTV
170 180 190 200 210 220
230 240 250 260 270
pF1KE1 PQQLQVHGVQQSVPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQE----------
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PQQLQVHGVQQSVPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQESSGSQFPARK
230 240 250 260 270 280
pF1KE1 ------------------------------------------------------------
XP_011 AEQRDPRPTPPPEPPPRPPACSGEAPQLGSPEPPPPHYEPGAEQWVELVGVLPPHLLLPQ
290 300 310 320 330 340
280 290
pF1KE1 ----------------------------------------VQQLQQVPVPHVYSSQVQYV
::::::::::::::::::::
XP_011 QKVVFEPLSRLPARASPDQRVRIQRIPQVLVFGTAATALKVQQLQQVPVPHVYSSQVQYV
350 360 370 380 390 400
300 310 320 330 340 350
pF1KE1 EGGDASYTASAIRSSTYSYPETPLYTQTASTSYYEAAGTATQVSTPATSQAVASSGSMPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EGGDASYTASAIRSSTYSYPETPLYTQTASTSYYEAAGTATQVSTPATSQAVASSGSMPM
410 420 430 440 450 460
360 370 380 390 400 410
pF1KE1 YVSGSQVVASSASTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQGG
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YVSGSQVVASSTSTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQGG
470 480 490 500 510 520
420 430 440 450 460 470
pF1KE1 YMLGSASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YMLGSASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAA
530 540 550 560 570 580
480 490 500 510 520 530
pF1KE1 SFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQ
590 600 610 620 630 640
540 550 560 570 580 590
pF1KE1 RLKPIQKMEGMTNGVAVGQQPSTGLSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RLKPIQKMEGMTNGVAVGQQPSTGLSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPE
650 660 670 680 690 700
600 610 620 630 640 650
pF1KE1 GVGPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVGPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEA
710 720 730 740 750 760
660 670 680 690 700 710
pF1KE1 EKRLPKAILVLLSKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKRLPKAILVLLSKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSL
770 780 790 800 810 820
720 730 740 750 760 770
pF1KE1 ESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDL
830 840 850 860 870 880
780 790 800 810 820 830
pF1KE1 NRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQG
890 900 910 920 930 940
840 850 860 870 880 890
pF1KE1 SAGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SAGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAK
950 960 970 980 990 1000
900 910 920 930 940 950
pF1KE1 GETPIAVMGEFANLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESPALGPETLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GETPIAVMGEFANLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESPALGPETLE
1010 1020 1030 1040 1050 1060
960 970
pF1KE1 PPAKLARTDARGLFVQALPSS
:::::::::::::::::::::
XP_011 PPAKLARTDARGLFVQALPSS
1070 1080
>--
initn: 575 init1: 575 opt: 575 Z-score: 223.7 bits: 53.0 E(85289): 1e-05
Smith-Waterman score: 575; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78)
10 20 30 40 50 60
pF1KE1 MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIVVTVSEGAMRASETVSEAS
::::::::::::::::::
XP_011 PQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIVVTVSEGAMRASETVSEAS
70 80 90 100 110 120
>>XP_011526470 (OMIM: 600006) PREDICTED: MHC class II re (991 aa)
initn: 5447 init1: 3584 opt: 3749 Z-score: 1324.0 bits: 256.5 E(85289): 5.2e-67
Smith-Waterman score: 5406; 80.9% identity (80.9% similar) in 1089 aa overlap (1-979:1-991)
10 20 30 40 50 60
pF1KE1 MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIVVTVSEGAMRASETVSEAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIVVTVSEGAMRASETVSEAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 PGSTASQTGVPTQVVQQVQGTQQRLLVQTSVQAKPGHVSPLQLTNIQVPQQALPTQRLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGSTASQTGVPTQVVQQVQGTQQRLLVQTSVQAKPGHVSPLQLTNIQVPQQALPTQRLVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 QSAAPGSKGGQVSLTVHGTQQVHSPPEQSPVQANSSSSKTAGAPTGTVPQQLQVHGVQQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QSAAPGSKGGQVSLTVHGTQQVHSPPEQSPVQANSSSSKTAGAPTGTVPQQLQVHGVQQS
190 200 210 220 230 240
250 260 270
pF1KE1 VPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQE----------------------
::::::::::::::::::::::::::::::::::::::
XP_011 VPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQESSGSQFPARKAEQRDPRPTPPP
250 260 270 280 290 300
pF1KE1 ------------------------------------------------------------
XP_011 EPPPRPPACSGEAPQLGSPEPPPPHYEPGAEQWVELVGVLPPHLLLPQQKVVFEPLSRLP
310 320 330 340 350 360
280 290 300 310
pF1KE1 ----------------------------VQQLQQVPVPHVYSSQVQYVEGGDASYTASAI
::::::::::::::::::::::::::::::::
XP_011 ARASPDQRVRIQRIPQVLVFGTAATALKVQQLQQVPVPHVYSSQVQYVEGGDASYTASAI
370 380 390 400 410 420
320 330 340 350 360 370
pF1KE1 RSSTYSYPETPLYTQTASTSYYEAAGTATQVSTPATSQAVASSGSMPMYVSGSQVVASSA
:::::::::::::::::::::::::::::::
XP_011 RSSTYSYPETPLYTQTASTSYYEAAGTATQV-----------------------------
430 440 450
380 390 400 410 420 430
pF1KE1 STGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQGGYMLGSASQSYSH
XP_011 ------------------------------------------------------------
440 450 460 470 480 490
pF1KE1 TTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMG
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ---------QWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMG
460 470 480 490 500
500 510 520 530 540 550
pF1KE1 LRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGMT
510 520 530 540 550 560
560 570 580 590 600 610
pF1KE1 NGVAVGQQPSTGLSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NGVAVGQQPSTGLSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQV
570 580 590 600 610 620
620 630 640 650 660 670
pF1KE1 LYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLL
630 640 650 660 670 680
680 690 700 710 720 730
pF1KE1 SKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIP
690 700 710 720 730 740
740 750 760 770 780 790
pF1KE1 EEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQA
750 760 770 780 790 800
800 810 820 830 840 850
pF1KE1 SWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFL
810 820 830 840 850 860
860 870 880 890 900 910
pF1KE1 LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFA
870 880 890 900 910 920
920 930 940 950 960 970
pF1KE1 NLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESPALGPETLEPPAKLARTDARG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESPALGPETLEPPAKLARTDARG
930 940 950 960 970 980
pF1KE1 LFVQALPSS
:::::::::
XP_011 LFVQALPSS
990
>>XP_016870490 (OMIM: 601337) PREDICTED: transcription f (724 aa)
initn: 2407 init1: 1360 opt: 2484 Z-score: 887.5 bits: 175.2 E(85289): 1.1e-42
Smith-Waterman score: 2671; 62.0% identity (82.2% similar) in 676 aa overlap (268-937:29-659)
240 250 260 270 280 290
pF1KE1 QQSVPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQEVQQLQQVP-VPHVYSSQVQ
: .: : : :.:::.: : : ::: .:::
XP_016 MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQTVQQVQHVYPAQVQ
10 20 30 40 50
300 310 320 330 340 350
pF1KE1 YVEGGDASYTASAIRSSTYSYPETPLYTQTASTSYYEAAGTATQVSTPATSQAVASSGSM
::::.:. :: .:::..:: : :: .:.:... .:... :...::.: ..:......:..
XP_016 YVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQVTTVVSSHSMVGTGGI
60 70 80 90 100 110
360 370 380 390 400 410
pF1KE1 PMYVSGSQVVASSASTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQ
: :.:.:...::. :::.:
XP_016 QMGVTGGQLISSSG----------------------------------------GTYLI-
120 130
420 430 440 450 460 470
pF1KE1 GGYMLGSASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVN
: . ....: .:::::::::.::::::::::::::::::::: ::: ::::.::.:::
XP_016 -GNSMENSGHSVTHTTRASPATLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPVN
140 150 160 170 180 190
480 490 500 510 520 530
pF1KE1 AASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQ
::::::::::.:::::::::::::::::::::.:.: .::: ::.::.:.:::: ::..:
XP_016 AASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQ
200 210 220 230 240 250
540 550 560 570 580 590
pF1KE1 KQRLKPIQKMEGMTNG-VAVGQQPSTGLSD-ISAQVQQYQQFLDASRSLPDFTELDLQGK
::: ::.::..:...: .. ::: .:.. . . :: :..::::::::.::.: :.....
XP_016 KQRYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEISS-
260 270 280 290 300 310
600 610 620 630 640 650
pF1KE1 VLPEGVGPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAV
::.:. :::..: :::::::::.::.:::::.:.: ::.:::::. : :... ..
XP_016 -LPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITE
320 330 340 350 360 370
660 670 680 690 700 710
pF1KE1 HD---EAEKRLPKAILVLLSKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAI
. : :.::::: :. : : : .:.: .::. .::.:::::::::::::::::::::
XP_016 SSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAI
380 390 400 410 420 430
720 730 740 750 760 770
pF1KE1 RNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQI
::::::::.::..:: :::..:...::::..::::::::::::::::::::::::::.::
XP_016 RNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQI
440 450 460 470 480 490
780 790 800 810 820 830
pF1KE1 NQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQ
:::::::::::::::::::::::.:.: .::::: :::.:::::..:::::::::.:. :
XP_016 NQMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQ
500 510 520 530 540 550
840 850 860 870 880 890
pF1KE1 VLKPYQGSAGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIE
.::::.: .:::::. ::::::::::::::::::::::::::::::::::::::.::.:
XP_016 ALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVE
560 570 580 590 600 610
900 910 920 930 940 950
pF1KE1 HRVAQAKGETPIAVMGEFANLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESPA
:::::: :::::::::::..: ....: . :::: : : : ..::
XP_016 HRVAQATGETPIAVMGEFGDL-NAVSPGNLDKDEGSEVESEMDEELDDSSEPQAKREKTE
620 630 640 650 660 670
960 970
pF1KE1 LGPETLEPPAKLARTDARGLFVQALPSS
XP_016 LSQAFPVGCMQPVLETGVQPSLLNPIHSEHIVTSTQTIRQCSATGNTYTAV
680 690 700 710 720
>>NP_001269045 (OMIM: 601337) transcription factor RFX3 (749 aa)
initn: 2571 init1: 1360 opt: 2439 Z-score: 871.7 bits: 172.4 E(85289): 8.1e-42
Smith-Waterman score: 2636; 61.2% identity (82.3% similar) in 677 aa overlap (268-937:29-684)
240 250 260 270 280 290
pF1KE1 QQSVPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQEVQQLQQVP-VPHVYSSQVQ
: .: : : :.:::.: : : ::: .:::
NP_001 MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQTVQQVQHVYPAQVQ
10 20 30 40 50
300 310 320 330 340 350
pF1KE1 YVEGGDASYTASAIRSSTYSYPETPLYTQTASTSYYEAAGTATQVSTPATSQAVASSGSM
::::.:. :: .:::..:: : :: .:.:... .:... :...::.: ..:......:..
NP_001 YVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQVTTVVSSHSMVGTGGI
60 70 80 90 100 110
360 370 380 390 400 410
pF1KE1 PMYVSGSQVVASSASTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQ
: :.:.:...:: :: :.. .:: . . :. .:.
NP_001 QMGVTGGQLISSS------------------GGTYLIGNSMENSGHSVTHTTRASPATIE
120 130 140 150 160
420 430 440 450 460 470
pF1KE1 GGYMLGSASQSYS-HTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPV
. . :.. : : . . .::::::::::::::::::::: ::: ::::.::.::
NP_001 MAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPV
170 180 190 200 210 220
480 490 500 510 520 530
pF1KE1 NAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFS
:::::::::::.:::::::::::::::::::::.:.: .::: ::.::.:.:::: ::..
NP_001 NAASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQ
230 240 250 260 270 280
540 550 560 570 580 590
pF1KE1 QKQRLKPIQKMEGMTNG-VAVGQQPSTGLSD-ISAQVQQYQQFLDASRSLPDFTELDLQG
:::: ::.::..:...: .. ::: .:.. . . :: :..::::::::.::.: :.....
NP_001 QKQRYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEISS
290 300 310 320 330 340
600 610 620 630 640 650
pF1KE1 KVLPEGVGPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLA
::.:. :::..: :::::::::.::.:::::.:.: ::.:::::. : :... ..
NP_001 --LPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTIT
350 360 370 380 390
660 670 680 690 700 710
pF1KE1 VHD---EAEKRLPKAILVLLSKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQA
. : :.::::: :. : : : .:.: .::. .::.::::::::::::::::::::
NP_001 ESSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQA
400 410 420 430 440 450
720 730 740 750 760 770
pF1KE1 IRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQ
:::::::::.::..:: :::..:...::::..::::::::::::::::::::::::::.:
NP_001 IRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQ
460 470 480 490 500 510
780 790 800 810 820 830
pF1KE1 INQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVS
::::::::::::::::::::::::.:.: .::::: :::.:::::..:::::::::.:.
NP_001 INQMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMM
520 530 540 550 560 570
840 850 860 870 880 890
pF1KE1 QVLKPYQGSAGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLI
:.::::.: .:::::. ::::::::::::::::::::::::::::::::::::::.::.
NP_001 QALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLV
580 590 600 610 620 630
900 910 920 930 940 950
pF1KE1 EHRVAQAKGETPIAVMGEFANLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESP
::::::: :::::::::::..: ....: . :::: : : : ..::
NP_001 EHRVAQATGETPIAVMGEFGDL-NAVSPGNLDKDEGSEVESEMDEELDDSSEPQAKREKT
640 650 660 670 680 690
960 970
pF1KE1 ALGPETLEPPAKLARTDARGLFVQALPSS
NP_001 ELSQAFPVGCMQPVLETGVQPSLLNPIHSEHIVTSTQTIRQCSATGNTYTAV
700 710 720 730 740
>>NP_602304 (OMIM: 601337) transcription factor RFX3 iso (749 aa)
initn: 2571 init1: 1360 opt: 2439 Z-score: 871.7 bits: 172.4 E(85289): 8.1e-42
Smith-Waterman score: 2636; 61.2% identity (82.3% similar) in 677 aa overlap (268-937:29-684)
240 250 260 270 280 290
pF1KE1 QQSVPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQEVQQLQQVP-VPHVYSSQVQ
: .: : : :.:::.: : : ::: .:::
NP_602 MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQTVQQVQHVYPAQVQ
10 20 30 40 50
300 310 320 330 340 350
pF1KE1 YVEGGDASYTASAIRSSTYSYPETPLYTQTASTSYYEAAGTATQVSTPATSQAVASSGSM
::::.:. :: .:::..:: : :: .:.:... .:... :...::.: ..:......:..
NP_602 YVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQVTTVVSSHSMVGTGGI
60 70 80 90 100 110
360 370 380 390 400 410
pF1KE1 PMYVSGSQVVASSASTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQ
: :.:.:...:: :: :.. .:: . . :. .:.
NP_602 QMGVTGGQLISSS------------------GGTYLIGNSMENSGHSVTHTTRASPATIE
120 130 140 150 160
420 430 440 450 460 470
pF1KE1 GGYMLGSASQSYS-HTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPV
. . :.. : : . . .::::::::::::::::::::: ::: ::::.::.::
NP_602 MAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPV
170 180 190 200 210 220
480 490 500 510 520 530
pF1KE1 NAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFS
:::::::::::.:::::::::::::::::::::.:.: .::: ::.::.:.:::: ::..
NP_602 NAASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQ
230 240 250 260 270 280
540 550 560 570 580 590
pF1KE1 QKQRLKPIQKMEGMTNG-VAVGQQPSTGLSD-ISAQVQQYQQFLDASRSLPDFTELDLQG
:::: ::.::..:...: .. ::: .:.. . . :: :..::::::::.::.: :.....
NP_602 QKQRYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEISS
290 300 310 320 330 340
600 610 620 630 640 650
pF1KE1 KVLPEGVGPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLA
::.:. :::..: :::::::::.::.:::::.:.: ::.:::::. : :... ..
NP_602 --LPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTIT
350 360 370 380 390
660 670 680 690 700 710
pF1KE1 VHD---EAEKRLPKAILVLLSKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQA
. : :.::::: :. : : : .:.: .::. .::.::::::::::::::::::::
NP_602 ESSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQA
400 410 420 430 440 450
720 730 740 750 760 770
pF1KE1 IRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQ
:::::::::.::..:: :::..:...::::..::::::::::::::::::::::::::.:
NP_602 IRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQ
460 470 480 490 500 510
780 790 800 810 820 830
pF1KE1 INQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVS
::::::::::::::::::::::::.:.: .::::: :::.:::::..:::::::::.:.
NP_602 INQMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMM
520 530 540 550 560 570
840 850 860 870 880 890
pF1KE1 QVLKPYQGSAGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLI
:.::::.: .:::::. ::::::::::::::::::::::::::::::::::::::.::.
NP_602 QALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLV
580 590 600 610 620 630
900 910 920 930 940 950
pF1KE1 EHRVAQAKGETPIAVMGEFANLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESP
::::::: :::::::::::..: ....: . :::: : : : ..::
NP_602 EHRVAQATGETPIAVMGEFGDL-NAVSPGNLDKDEGSEVESEMDEELDDSSEPQAKREKT
640 650 660 670 680 690
960 970
pF1KE1 ALGPETLEPPAKLARTDARGLFVQALPSS
NP_602 ELSQAFPVGCMQPVLETGVQPSLLNPIHSEHIVTSTQTIRQCSATGNTYTAV
700 710 720 730 740
979 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:28:00 2016 done: Sat Nov 5 07:28:03 2016
Total Scan time: 16.820 Total Display time: 0.330
Function used was FASTA [36.3.4 Apr, 2011]