FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1028, 1217 aa
  1>>>pF1KE1028 1217 - 1217 aa - 1217 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 15.2293+/-0.00194; mu= -23.8219+/- 0.115
 mean_var=583.0128+/-122.969, 0's: 0 Z-trim(106.0): 122  B-trim: 74 in 1/52
 Lambda= 0.053117
 statistics sampled from 8693 (8759) to 8693 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.269), width:  16
 Scan time:  5.520

The best scores are:                                      opt bits E(32554)
CCDS31285.1 SMC3 gene_id:9126|Hs108|chr10          (1217) 7753 610.9 6.1e-174


>>CCDS31285.1 SMC3 gene_id:9126|Hs108|chr10               (1217 aa)
 initn: 7753 init1: 7753 opt: 7753  Z-score: 3236.2  bits: 610.9 E(32554): 6.1e-174
Smith-Waterman score: 7753; 100.0% identity (100.0% similar) in 1217 aa overlap (1-1217:1-1217)

               10        20        30        40        50        60
pF1KE1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VMNLLESAGFSRSNPYYIVKQGKINQMATAPDSQRLKLLREVAGTRVYDERKEESISLMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VMNLLESAGFSRSNPYYIVKQGKINQMATAPDSQRLKLLREVAGTRVYDERKEESISLMK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 ETEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ETEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 ELSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQLSAERQEQIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ELSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQLSAERQEQIK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 QRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSVKEKEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSVKEKEER
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 GIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIAAIHKDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIAAIHKDL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 EDTEANKEKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKKDELQSERNYLWREENAEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EDTEANKEKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKKDELQSERNYLWREENAEQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 QALAAKREDLEKKQQLLRAATGKAILNGIDSINKVLDHFRRKGINQHVQNGYHGIVMNNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QALAAKREDLEKKQQLLRAATGKAILNGIDSINKVLDHFRRKGINQHVQNGYHGIVMNNF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 ECEPAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKLDVRDTAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ECEPAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKLDVRDTAY
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE1 PETNDAIPMISKLRYNPRFDKAFKHVFGKTLICRSMEVSTQLARAFTMDCITLEGDQVSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PETNDAIPMISKLRYNPRFDKAFKHVFGKTLICRSMEVSTQLARAFTMDCITLEGDQVSH
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE1 RGALTGGYYDTRKSRLELQKDVRKAEEELGELEAKLNENLRRNIERINNEIDQLMNQMQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RGALTGGYYDTRKSRLELQKDVRKAEEELGELEAKLNENLRRNIERINNEIDQLMNQMQQ
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE1 IETQQRKFKASRDSILSEMKMLKEKRQQSEKTFMPKQRSLQSLEASLHAMESTRESLKAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IETQQRKFKASRDSILSEMKMLKEKRQQSEKTFMPKQRSLQSLEASLHAMESTRESLKAE
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE1 LGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNERIKLEGIITRVETYLNENLRKRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNERIKLEGIITRVETYLNENLRKRL
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE1 DQVEQELNELRETEGGTVLTATTSELEAINKRVKDTMARSEDLDNSIDKTEAGIKELQKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DQVEQELNELRETEGGTVLTATTSELEAINKRVKDTMARSEDLDNSIDKTEAGIKELQKS
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KE1 MERWKNMEKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAFEKYQTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MERWKNMEKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAFEKYQTL
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KE1 SLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNV
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KE1 LELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERG
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KE1 SGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFY
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KE1 LFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLESADKFYGVKFRNKVSHIDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLESADKFYGVKFRNKVSHIDV
             1150      1160      1170      1180      1190      1200

             1210       
pF1KE1 ITAEMAKDFVEDDTTHG
       :::::::::::::::::
CCDS31 ITAEMAKDFVEDDTTHG
             1210       




1217 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:17:34 2016 done: Sat Nov  5 21:17:35 2016
 Total Scan time:  5.520 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]