Result of FASTA (ccds) for
pF1KE1031
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1031, 1393 aa
1>>>pF1KE1031 1393 - 1393 aa - 1393 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5473+/-0.000831; mu= 18.8379+/- 0.050
mean_var=115.3950+/-22.559, 0's: 0 Z-trim(111.0): 16 B-trim: 0 in 0/52
Lambda= 0.119394
statistics sampled from 11999 (12005) to 11999 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.369), width: 16
Scan time: 5.190
The best scores are: opt bits E(32554)
CCDS10079.1 RPAP1 gene_id:26015|Hs108|chr15 (1393) 9276 1609.5 0
>>CCDS10079.1 RPAP1 gene_id:26015|Hs108|chr15 (1393 aa)
initn: 9276 init1: 9276 opt: 9276 Z-score: 8631.2 bits: 1609.5 E(32554): 0
Smith-Waterman score: 9276; 99.9% identity (99.9% similar) in 1393 aa overlap (1-1393:1-1393)
10 20 30 40 50 60
pF1KE1 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNRGGGDANSDRPPLQDHRDVVMLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNRGGGDANSDRPPLQDHRDVVMLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 NLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRHDQHITAVLTKIIERDTSSVAVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRHDQHITAVLTKIIERDTSSVAVN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNVGPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNVGPPE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 EEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKEEPLMSAFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKEEPLMSAFA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 SEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 AQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGVIATAIRALRALLVAPGDEELLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGVIATAIRALRALLVAPGDEELLD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE1 STFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRKSPEEESRPPPDLARHDVIKGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 STFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRKSPEEESRPPPDLARHDVIKGLL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE1 ATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLESATGVLECPRLIETIVREFLPT
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
CCDS10 ATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLESATRVLECPRLIETIVREFLPT
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE1 SWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARLLSSFDLRSRLCRIIAEAPQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARLLSSFDLRSRLCRIIAEAPQEL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE1 ALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVLMRALQVVPRELSTHPPQPLSMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVLMRALQVVPRELSTHPPQPLSMQ
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE1 RIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE1 LLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPEDWLQDMERLSEELLLPLLSQPT
::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
CCDS10 LLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPEDWLQDMQRLSEELLLPLLSQPT
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE1 LGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE1 LNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALA
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE1 LAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLTHELLLSCVFRLEFLPERTSGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLTHELLLSCVFRLEFLPERTSGGP
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE1 EAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNCYLTHCSPARASLLASQALHRGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNCYLTHCSPARASLLASQALHRGE
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KE1 LQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPSGLSPTDTMGTAMRVLQWVLVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPSGLSPTDTMGTAMRVLQWVLVLE
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KE1 SWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQVLPNLNLDCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQVLPNLNLDCR
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KE1 LPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALS
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KE1 LPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFSQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFSQD
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KE1 PQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNSTLPEGFELYSQLPPLRQHYLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNSTLPEGFELYSQLPPLRQHYLQR
1330 1340 1350 1360 1370 1380
1390
pF1KE1 LTSTVLQNGVSET
:::::::::::::
CCDS10 LTSTVLQNGVSET
1390
1393 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:31:10 2016 done: Sat Nov 5 07:31:10 2016
Total Scan time: 5.190 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]