Result of FASTA (ccds) for
pF1KE1032
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1032, 1427 aa
1>>>pF1KE1032 1427 - 1427 aa - 1427 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.8249+/-0.00117; mu= 6.7788+/- 0.071
mean_var=166.6773+/-33.544, 0's: 0 Z-trim(107.5): 29 B-trim: 0 in 0/53
Lambda= 0.099343
statistics sampled from 9627 (9637) to 9627 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.296), width: 16
Scan time: 4.080
The best scores are: opt bits E(32554)
CCDS41710.1 NPAT gene_id:4863|Hs108|chr11 (1427) 9164 1326.8 0
>>CCDS41710.1 NPAT gene_id:4863|Hs108|chr11 (1427 aa)
initn: 9164 init1: 9164 opt: 9164 Z-score: 7102.8 bits: 1326.8 E(32554): 0
Smith-Waterman score: 9164; 99.9% identity (100.0% similar) in 1427 aa overlap (1-1427:1-1427)
10 20 30 40 50 60
pF1KE1 MLLPSDVARLVLGYLQQENLISTCQTFILESSDLKEYAEHCTDEGFIPACLLSLFGKNLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MLLPSDVARLVLGYLQQENLISTCQTFILESSDLKEYAEHCTDEGFIPACLLSLFGKNLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TILNEYVAMKTKETSNNVPAIMSSLWKKLDHTLSQIRSMQSSPRFAGSQRARTRTGIAEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TILNEYVAMKTKETSNNVPAIMSSLWKKLDHTLSQIRSMQSSPRFAGSQRARTRTGIAEI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 KRQRKLASQTAPASAELLTLPYLSGQFTTPPSTGTQVTRPSGQISDPSRSYFVVVNHSQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KRQRKLASQTAPASAELLTLPYLSGQFTTPPSTGTQVTRPSGQISDPSRSYFVVVNHSQS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 QDTVTTGEALNVIPGAQEKKAHASLMSPGRRKSESQRKSTTLSGPHSTIRNFQDPNAFAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QDTVTTGEALNVIPGAQEKKAHASLMSPGRRKSESQRKSTTLSGPHSTIRNFQDPNAFAV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 EKQMVIENAREKILSNKSLQEKLAENINKFLTSDNNIAQVPKQTDNNPTEPETSIDEFLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EKQMVIENAREKILSNKSLQEKLAENINKFLTSDNNIAQVPKQTDNNPTEPETSIDEFLG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 LPSEIHMSEEAIQDILEQTESDPAFQALFDLFDYGKTKNNKNISQSISSQPMESNPSIVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LPSEIHMSEEAIQDILEQTESDPAFQALFDLFDYGKTKNNKNISQSISSQPMESNPSIVL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 ADETNLAVKGSFETEESDGQSGQPAFCTSYQNDDPLNALKNSNNHDVLRQEDQENFSQIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ADETNLAVKGSFETEESDGQSGQPAFCTSYQNDDPLNALKNSNNHDVLRQEDQENFSQIS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 TSIQKKAFKTAVPTEQKCDIDITFESVPNLNDFNQRGNSNAECNPHCAELYTNQMSTETE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TSIQKKAFKTAVPTEQKCDIDITFESVPNLNDFNQRGNSNAECNPHCAELYTNQMSTETE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE1 MAIGIEKNSLSSNVPSESQLQPDQPDIPITSFVSLGCEANNENLILSGKSSQLLSQDTSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAIGIEKNSLSSNVPSESQLQPDQPDIPITSFVSLGCEANNENLILSGKSSQLLSQDTSL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE1 TGKPSKKSQFCENSNDTVKLKINFHGSKSSDSSEIHKSKIEINVLEPVMSQLSNCQDNSC
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
CCDS41 TGKPSKKSQFCENSNDTVKLKINFHGSKSSDSSEVHKSKIEINVLEPVMSQLSNCQDNSC
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE1 LQSEILPVSVESSHLNVSGQVEIHLGDSLSSTKQPSNDSASVELNHTENEAQASKSENSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LQSEILPVSVESSHLNVSGQVEIHLGDSLSSTKQPSNDSASVELNHTENEAQASKSENSQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE1 EPSSSVKEENTIFLSLGGNANCEKVALTPPEGTPVENSHSLPPESVCSSVGDSHPESQNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EPSSSVKEENTIFLSLGGNANCEKVALTPPEGTPVENSHSLPPESVCSSVGDSHPESQNT
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE1 DDKPSSNNSAEIDASNIVSLKVIISDDPFVSSDTELTSAVSSINGENLPTIILSSPTKSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DDKPSSNNSAEIDASNIVSLKVIISDDPFVSSDTELTSAVSSINGENLPTIILSSPTKSP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE1 TKNAELVKCLSSEETVGAVVYAEVGDSASMEQSLLTFKSEDSAVNNTQNEDGIAFSANVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TKNAELVKCLSSEETVGAVVYAEVGDSASMEQSLLTFKSEDSAVNNTQNEDGIAFSANVT
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE1 PCVSKDGGYIQLMPATSTAFGNSNNILIATCVTDPTALGTSVSQSNVVVLPGNSAPMTAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PCVSKDGGYIQLMPATSTAFGNSNNILIATCVTDPTALGTSVSQSNVVVLPGNSAPMTAQ
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE1 PLPPQLQTPPRSNSVFAVNQAVSPNFSQGSAIIIASPVQPVLQGMVGMIPVSVVGQNGNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PLPPQLQTPPRSNSVFAVNQAVSPNFSQGSAIIIASPVQPVLQGMVGMIPVSVVGQNGNN
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE1 FSTPPRQVLHMPLTAPVCNRSIPQFPVPPKSQKAQGLRNKPCIGKQVNNLVDSSGHSVGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FSTPPRQVLHMPLTAPVCNRSIPQFPVPPKSQKAQGLRNKPCIGKQVNNLVDSSGHSVGC
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE1 HAQKTEVSDKSIATDLGKKSEETTVPFPEESIVPAAKPCHRRVLCFDSTTAPVANTQGPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HAQKTEVSDKSIATDLGKKSEETTVPFPEESIVPAAKPCHRRVLCFDSTTAPVANTQGPN
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KE1 HKMVSQNKERNAVSFPNLDSPNVSSTLKPPSNNAIKREKEKPPLPKILSKSESAISRHTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HKMVSQNKERNAVSFPNLDSPNVSSTLKPPSNNAIKREKEKPPLPKILSKSESAISRHTT
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KE1 IRETQSEKKVSPTEIVLESFHKATANKENELCSDVERQKNPENSKLSIGQQNGGLRSEKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IRETQSEKKVSPTEIVLESFHKATANKENELCSDVERQKNPENSKLSIGQQNGGLRSEKS
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KE1 IASLQEMTKKQGTSSNNKNVLSVGTAVKDLKQEQTKSASSLITTEMLQDIQRHSSVSRLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IASLQEMTKKQGTSSNNKNVLSVGTAVKDLKQEQTKSASSLITTEMLQDIQRHSSVSRLA
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KE1 DSSDLPVPRTPGSGAGEKHKEEPIDIIKAPSSRRFSEDSSTSKVMVPPVTPDLPACSPAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DSSDLPVPRTPGSGAGEKHKEEPIDIIKAPSSRRFSEDSSTSKVMVPPVTPDLPACSPAS
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KE1 ETGSENSVNMAAHTLMILSRAAISRTTSATPLKDNTQQFRASSRSTTKKRKIEELDERER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ETGSENSVNMAAHTLMILSRAAISRTTSATPLKDNTQQFRASSRSTTKKRKIEELDERER
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420
pF1KE1 NSRPSSKNLTNSSIPMKKKKIKKKKLPSSFPAGMDVDKFLLSLHYDE
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NSRPSSKNLTNSSIPMKKKKIKKKKLPSSFPAGMDVDKFLLSLHYDE
1390 1400 1410 1420
1427 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:31:56 2016 done: Sat Nov 5 07:31:57 2016
Total Scan time: 4.080 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]