FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1038, 672 aa
  1>>>pF1KE1038 672 - 672 aa - 672 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5931+/-0.00105; mu= 12.5028+/- 0.063
 mean_var=75.0964+/-14.785, 0's: 0 Z-trim(103.7): 21  B-trim: 0 in 0/52
 Lambda= 0.148001
 statistics sampled from 7532 (7538) to 7532 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.597), E-opt: 0.2 (0.232), width:  16
 Scan time:  3.090

The best scores are:                                      opt bits E(32554)
CCDS54799.1 BBS7 gene_id:55212|Hs108|chr4          ( 672) 4410 951.5       0
CCDS3724.1 BBS7 gene_id:55212|Hs108|chr4           ( 715) 4410 951.5       0


>>CCDS54799.1 BBS7 gene_id:55212|Hs108|chr4               (672 aa)
 initn: 4410 init1: 4410 opt: 4410  Z-score: 5086.4  bits: 951.5 E(32554):    0
Smith-Waterman score: 4410; 100.0% identity (100.0% similar) in 672 aa overlap (1-672:1-672)

               10        20        30        40        50        60
pF1KE1 MDLILNRMDYLQVGVTSQKTMKLIPASRHRATQKVVIGDHDGVVMCFGMKKGEAAAVFKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MDLILNRMDYLQVGVTSQKTMKLIPASRHRATQKVVIGDHDGVVMCFGMKKGEAAAVFKT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LPGPKIARLELGGVINTPQEKIFIAAASEIRGFTKRGKQFLSFETNLTESIKAMHISGSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LPGPKIARLELGGVINTPQEKIFIAAASEIRGFTKRGKQFLSFETNLTESIKAMHISGSD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LFLSASYIYNHYCDCKDQHYYLSGDKINDVICLPVERLSRITPVLACQDRVLRVLQGSDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LFLSASYIYNHYCDCKDQHYYLSGDKINDVICLPVERLSRITPVLACQDRVLRVLQGSDV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 MYAVEVPGPPTVLALHNGNGGDSGEDLLFGTSDGKLALIQITTSKPVRKWEIQNEKKRGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MYAVEVPGPPTVLALHNGNGGDSGEDLLFGTSDGKLALIQITTSKPVRKWEIQNEKKRGG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 ILCIDSFDIVGDGVKDLLVGRDDGMVEVYSFDNANEPVLRFDQMLSESVTSIQGGCVGKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ILCIDSFDIVGDGVKDLLVGRDDGMVEVYSFDNANEPVLRFDQMLSESVTSIQGGCVGKD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 SYDEIVVSTYSGWVTGLTTEPIHKESGPGEELKINQEMQNKISSLRNELEHLQYKVLQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SYDEIVVSTYSGWVTGLTTEPIHKESGPGEELKINQEMQNKISSLRNELEHLQYKVLQER
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 ENYQQSSQSSKAKSAVPSFGINDKFTLNKDDASYSLILEVQTAIDNVLIQSDVPIDLLDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ENYQQSSQSSKAKSAVPSFGINDKFTLNKDDASYSLILEVQTAIDNVLIQSDVPIDLLDV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 DKNSAVVSFSSCDSESNDNFLLATYRCQADTTRLELKIRSIEGQYGTLQAYVTPRIQPKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DKNSAVVSFSSCDSESNDNFLLATYRCQADTTRLELKIRSIEGQYGTLQAYVTPRIQPKT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 CQVRQYHIKPLSLHQRTHFIDHDRPMNTLTLTGQFSFAEVHSWVVFCLPEVPEKPPAGEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CQVRQYHIKPLSLHQRTHFIDHDRPMNTLTLTGQFSFAEVHSWVVFCLPEVPEKPPAGEC
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 VTFYFQNTFLDTQLESTYRKGEGVFKSDNISTISILKDVLSKEATKRKINLNISYEINEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VTFYFQNTFLDTQLESTYRKGEGVFKSDNISTISILKDVLSKEATKRKINLNISYEINEV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE1 SVKHTLKLIHPKLEYQLLLAKKVQLIDALKELQIHEGNTNFLIPEYHCILEEADHLQEEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SVKHTLKLIHPKLEYQLLLAKKVQLIDALKELQIHEGNTNFLIPEYHCILEEADHLQEEY
              610       620       630       640       650       660

              670  
pF1KE1 KKQPAHLERLYG
       ::::::::::::
CCDS54 KKQPAHLERLYG
              670  

>>CCDS3724.1 BBS7 gene_id:55212|Hs108|chr4                (715 aa)
 initn: 4410 init1: 4410 opt: 4410  Z-score: 5085.9  bits: 951.5 E(32554):    0
Smith-Waterman score: 4410; 100.0% identity (100.0% similar) in 672 aa overlap (1-672:1-672)

               10        20        30        40        50        60
pF1KE1 MDLILNRMDYLQVGVTSQKTMKLIPASRHRATQKVVIGDHDGVVMCFGMKKGEAAAVFKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 MDLILNRMDYLQVGVTSQKTMKLIPASRHRATQKVVIGDHDGVVMCFGMKKGEAAAVFKT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LPGPKIARLELGGVINTPQEKIFIAAASEIRGFTKRGKQFLSFETNLTESIKAMHISGSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 LPGPKIARLELGGVINTPQEKIFIAAASEIRGFTKRGKQFLSFETNLTESIKAMHISGSD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LFLSASYIYNHYCDCKDQHYYLSGDKINDVICLPVERLSRITPVLACQDRVLRVLQGSDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 LFLSASYIYNHYCDCKDQHYYLSGDKINDVICLPVERLSRITPVLACQDRVLRVLQGSDV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 MYAVEVPGPPTVLALHNGNGGDSGEDLLFGTSDGKLALIQITTSKPVRKWEIQNEKKRGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 MYAVEVPGPPTVLALHNGNGGDSGEDLLFGTSDGKLALIQITTSKPVRKWEIQNEKKRGG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 ILCIDSFDIVGDGVKDLLVGRDDGMVEVYSFDNANEPVLRFDQMLSESVTSIQGGCVGKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 ILCIDSFDIVGDGVKDLLVGRDDGMVEVYSFDNANEPVLRFDQMLSESVTSIQGGCVGKD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 SYDEIVVSTYSGWVTGLTTEPIHKESGPGEELKINQEMQNKISSLRNELEHLQYKVLQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 SYDEIVVSTYSGWVTGLTTEPIHKESGPGEELKINQEMQNKISSLRNELEHLQYKVLQER
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 ENYQQSSQSSKAKSAVPSFGINDKFTLNKDDASYSLILEVQTAIDNVLIQSDVPIDLLDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 ENYQQSSQSSKAKSAVPSFGINDKFTLNKDDASYSLILEVQTAIDNVLIQSDVPIDLLDV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 DKNSAVVSFSSCDSESNDNFLLATYRCQADTTRLELKIRSIEGQYGTLQAYVTPRIQPKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 DKNSAVVSFSSCDSESNDNFLLATYRCQADTTRLELKIRSIEGQYGTLQAYVTPRIQPKT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 CQVRQYHIKPLSLHQRTHFIDHDRPMNTLTLTGQFSFAEVHSWVVFCLPEVPEKPPAGEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 CQVRQYHIKPLSLHQRTHFIDHDRPMNTLTLTGQFSFAEVHSWVVFCLPEVPEKPPAGEC
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 VTFYFQNTFLDTQLESTYRKGEGVFKSDNISTISILKDVLSKEATKRKINLNISYEINEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 VTFYFQNTFLDTQLESTYRKGEGVFKSDNISTISILKDVLSKEATKRKINLNISYEINEV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE1 SVKHTLKLIHPKLEYQLLLAKKVQLIDALKELQIHEGNTNFLIPEYHCILEEADHLQEEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 SVKHTLKLIHPKLEYQLLLAKKVQLIDALKELQIHEGNTNFLIPEYHCILEEADHLQEEY
              610       620       630       640       650       660

              670                                             
pF1KE1 KKQPAHLERLYG                                           
       ::::::::::::                                           
CCDS37 KKQPAHLERLYGMITDLFIDKFKFKGTNVKTKVPLLLEILDSYDQNALISFFDAA
              670       680       690       700       710     




672 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:41:51 2016 done: Sat Nov  5 07:41:52 2016
 Total Scan time:  3.090 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]