Result of FASTA (ccds) for
pF1KE1047
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1047, 346 aa
1>>>pF1KE1047 346 - 346 aa - 346 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4894+/-0.000788; mu= 15.5041+/- 0.047
mean_var=68.8060+/-14.061, 0's: 0 Z-trim(108.8): 24 B-trim: 394 in 1/49
Lambda= 0.154618
statistics sampled from 10414 (10429) to 10414 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.32), width: 16
Scan time: 2.850
The best scores are: opt bits E(32554)
CCDS9984.1 XRCC3 gene_id:7517|Hs108|chr14 ( 346) 2281 517.5 6.2e-147
CCDS9790.1 RAD51B gene_id:5890|Hs108|chr14 ( 350) 315 79.0 6.5e-15
CCDS9789.1 RAD51B gene_id:5890|Hs108|chr14 ( 384) 315 79.0 7.1e-15
CCDS81815.1 RAD51B gene_id:5890|Hs108|chr14 ( 425) 315 79.0 7.7e-15
>>CCDS9984.1 XRCC3 gene_id:7517|Hs108|chr14 (346 aa)
initn: 2281 init1: 2281 opt: 2281 Z-score: 2751.4 bits: 517.5 E(32554): 6.2e-147
Smith-Waterman score: 2281; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)
10 20 30 40 50 60
pF1KE1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR
250 260 270 280 290 300
310 320 330 340
pF1KE1 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH
::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH
310 320 330 340
>>CCDS9790.1 RAD51B gene_id:5890|Hs108|chr14 (350 aa)
initn: 282 init1: 164 opt: 315 Z-score: 381.2 bits: 79.0 E(32554): 6.5e-15
Smith-Waterman score: 339; 27.4% identity (57.0% similar) in 351 aa overlap (3-337:6-342)
10 20 30 40 50
pF1KE1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHL
: . :. .. ... .. . .. : .: .: ..:.:: : .:: .: .
CCDS97 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RA
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 RGSSILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLA
. .. :: .. :. . :: .:: :.::. ..::..: . ::::.
CCDS97 CAPKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 LQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFG
... . . .: . ::::...::: ::.:: .:: .. .. :: . :: .
CCDS97 IMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTS----
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 SQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRAR
:.. . . : .:. ... ..:.:. .::..::::. : :::.: .. : .
CCDS97 SKVHLYRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNK
180 190 200 210 220 230
240 250 260 270 280
pF1KE1 HLQSLGATLRELSSAFQSPVLCINQVTE----AMEEQGAAHGP---LGFWDER-----VS
: ...:. :. :. ::. ::.: :. :. .: :.. . :
CCDS97 FLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVI
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE1 PALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTP
::: ::.... .::. . : :. : . . ..: : .: :::. ::.
CCDS97 AALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGLVLQG
300 310 320 330 340
pF1KE1 GTQSH
CCDS97 QEKP
350
>>CCDS9789.1 RAD51B gene_id:5890|Hs108|chr14 (384 aa)
initn: 282 init1: 164 opt: 315 Z-score: 380.6 bits: 79.0 E(32554): 7.1e-15
Smith-Waterman score: 339; 27.4% identity (57.0% similar) in 351 aa overlap (3-337:6-342)
10 20 30 40 50
pF1KE1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHL
: . :. .. ... .. . .. : .: .: ..:.:: : .:: .: .
CCDS97 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RA
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 RGSSILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLA
. .. :: .. :. . :: .:: :.::. ..::..: . ::::.
CCDS97 CAPKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 LQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFG
... . . .: . ::::...::: ::.:: .:: .. .. :: . :: .
CCDS97 IMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTS----
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 SQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRAR
:.. . . : .:. ... ..:.:. .::..::::. : :::.: .. : .
CCDS97 SKVHLYRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNK
180 190 200 210 220 230
240 250 260 270 280
pF1KE1 HLQSLGATLRELSSAFQSPVLCINQVTE----AMEEQGAAHGP---LGFWDER-----VS
: ...:. :. :. ::. ::.: :. :. .: :.. . :
CCDS97 FLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVI
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE1 PALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTP
::: ::.... .::. . : :. : . . ..: : .: :::. ::.
CCDS97 AALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGLVLQE
300 310 320 330 340
pF1KE1 GTQSH
CCDS97 TTFCSVTQAELNWAPEILPPQPPEQLGLQMCHHTQLIF
350 360 370 380
>>CCDS81815.1 RAD51B gene_id:5890|Hs108|chr14 (425 aa)
initn: 287 init1: 164 opt: 315 Z-score: 379.9 bits: 79.0 E(32554): 7.7e-15
Smith-Waterman score: 339; 27.4% identity (57.0% similar) in 351 aa overlap (3-337:6-342)
10 20 30 40 50
pF1KE1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHL
: . :. .. ... .. . .. : .: .: ..:.:: : .:: .: .
CCDS81 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RA
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 RGSSILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLA
. .. :: .. :. . :: .:: :.::. ..::..: . ::::.
CCDS81 CAPKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 LQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFG
... . . .: . ::::...::: ::.:: .:: .. .. :: . :: .
CCDS81 IMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTS----
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 SQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRAR
:.. . . : .:. ... ..:.:. .::..::::. : :::.: .. : .
CCDS81 SKVHLYRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNK
180 190 200 210 220 230
240 250 260 270 280
pF1KE1 HLQSLGATLRELSSAFQSPVLCINQVTE----AMEEQGAAHGP---LGFWDER-----VS
: ...:. :. :. ::. ::.: :. :. .: :.. . :
CCDS81 FLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVI
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE1 PALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTP
::: ::.... .::. . : :. : . . ..: : .: :::. ::.
CCDS81 AALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGLVLQV
300 310 320 330 340
pF1KE1 GTQSH
CCDS81 VRTVARVSPRSECWSAADSHPSPTFLIPDVVLRKTRNPRLLPSVSMCPPQMHSTVLSSAL
350 360 370 380 390 400
346 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:46:54 2016 done: Sat Nov 5 07:46:55 2016
Total Scan time: 2.850 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]