Result of FASTA (omim) for
pF1KE1047
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1047, 346 aa
1>>>pF1KE1047 346 - 346 aa - 346 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2937+/-0.000349; mu= 16.9527+/- 0.022
mean_var=74.6309+/-15.189, 0's: 0 Z-trim(115.6): 61 B-trim: 0 in 0/54
Lambda= 0.148462
statistics sampled from 26140 (26202) to 26140 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.307), width: 16
Scan time: 8.900
The best scores are: opt bits E(85289)
NP_001093588 (OMIM: 114480,600675,613972) DNA repa ( 346) 2281 497.7 1.5e-140
XP_005268103 (OMIM: 114480,600675,613972) PREDICTE ( 346) 2281 497.7 1.5e-140
NP_001093589 (OMIM: 114480,600675,613972) DNA repa ( 346) 2281 497.7 1.5e-140
NP_005423 (OMIM: 114480,600675,613972) DNA repair ( 346) 2281 497.7 1.5e-140
XP_011535440 (OMIM: 114480,600675,613972) PREDICTE ( 346) 2281 497.7 1.5e-140
NP_001308738 (OMIM: 602948) DNA repair protein RAD ( 347) 315 76.6 8.9e-14
NP_001308739 (OMIM: 602948) DNA repair protein RAD ( 347) 315 76.6 8.9e-14
NP_001308747 (OMIM: 602948) DNA repair protein RAD ( 347) 315 76.6 8.9e-14
NP_001308748 (OMIM: 602948) DNA repair protein RAD ( 348) 315 76.6 8.9e-14
NP_002868 (OMIM: 602948) DNA repair protein RAD51 ( 350) 315 76.6 8.9e-14
NP_598194 (OMIM: 602948) DNA repair protein RAD51 ( 350) 315 76.6 8.9e-14
NP_001308743 (OMIM: 602948) DNA repair protein RAD ( 351) 315 76.6 8.9e-14
NP_001308741 (OMIM: 602948) DNA repair protein RAD ( 351) 315 76.6 8.9e-14
NP_598193 (OMIM: 602948) DNA repair protein RAD51 ( 384) 315 76.6 9.6e-14
NP_001308750 (OMIM: 602948) DNA repair protein RAD ( 425) 315 76.7 1e-13
NP_001308744 (OMIM: 602948) DNA repair protein RAD ( 332) 300 73.4 7.9e-13
XP_016877034 (OMIM: 602948) PREDICTED: DNA repair ( 500) 283 69.9 1.4e-11
XP_011535352 (OMIM: 602948) PREDICTED: DNA repair ( 274) 274 67.8 3.2e-11
XP_011535353 (OMIM: 602948) PREDICTED: DNA repair ( 258) 273 67.5 3.6e-11
NP_001308746 (OMIM: 602948) DNA repair protein RAD ( 231) 222 56.6 6.4e-08
XP_016877036 (OMIM: 602948) PREDICTED: DNA repair ( 306) 222 56.7 8e-08
XP_006722064 (OMIM: 189960,602774,613390,613399) P ( 377) 215 55.2 2.6e-07
XP_006722065 (OMIM: 189960,602774,613390,613399) P ( 342) 209 53.9 6e-07
NP_478123 (OMIM: 189960,602774,613390,613399) DNA ( 376) 209 53.9 6.4e-07
XP_011520163 (OMIM: 114480,179617,614508) PREDICTE ( 280) 195 50.8 4.1e-06
NP_001157742 (OMIM: 114480,179617,614508) DNA repa ( 280) 195 50.8 4.1e-06
XP_011520160 (OMIM: 114480,179617,614508) PREDICTE ( 339) 195 50.9 4.7e-06
XP_011520159 (OMIM: 114480,179617,614508) PREDICTE ( 339) 195 50.9 4.7e-06
XP_011520162 (OMIM: 114480,179617,614508) PREDICTE ( 339) 195 50.9 4.7e-06
NP_002866 (OMIM: 114480,179617,614508) DNA repair ( 339) 195 50.9 4.7e-06
XP_006720689 (OMIM: 114480,179617,614508) PREDICTE ( 339) 195 50.9 4.7e-06
XP_011520161 (OMIM: 114480,179617,614508) PREDICTE ( 339) 195 50.9 4.7e-06
NP_008999 (OMIM: 602721) meiotic recombination pro ( 340) 193 50.5 6.4e-06
XP_011528137 (OMIM: 602721) PREDICTED: meiotic rec ( 362) 193 50.5 6.7e-06
XP_011528136 (OMIM: 602721) PREDICTED: meiotic rec ( 362) 193 50.5 6.7e-06
NP_002869 (OMIM: 602954,614291) DNA repair protein ( 328) 182 48.1 3.2e-05
NP_001136043 (OMIM: 602954,614291) DNA repair prot ( 348) 164 44.3 0.00048
XP_016877035 (OMIM: 602948) PREDICTED: DNA repair ( 324) 147 40.6 0.0057
>>NP_001093588 (OMIM: 114480,600675,613972) DNA repair p (346 aa)
initn: 2281 init1: 2281 opt: 2281 Z-score: 2644.1 bits: 497.7 E(85289): 1.5e-140
Smith-Waterman score: 2281; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)
10 20 30 40 50 60
pF1KE1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR
250 260 270 280 290 300
310 320 330 340
pF1KE1 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH
310 320 330 340
>>XP_005268103 (OMIM: 114480,600675,613972) PREDICTED: D (346 aa)
initn: 2281 init1: 2281 opt: 2281 Z-score: 2644.1 bits: 497.7 E(85289): 1.5e-140
Smith-Waterman score: 2281; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)
10 20 30 40 50 60
pF1KE1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR
250 260 270 280 290 300
310 320 330 340
pF1KE1 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH
::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH
310 320 330 340
>>NP_001093589 (OMIM: 114480,600675,613972) DNA repair p (346 aa)
initn: 2281 init1: 2281 opt: 2281 Z-score: 2644.1 bits: 497.7 E(85289): 1.5e-140
Smith-Waterman score: 2281; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)
10 20 30 40 50 60
pF1KE1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR
250 260 270 280 290 300
310 320 330 340
pF1KE1 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH
310 320 330 340
>>NP_005423 (OMIM: 114480,600675,613972) DNA repair prot (346 aa)
initn: 2281 init1: 2281 opt: 2281 Z-score: 2644.1 bits: 497.7 E(85289): 1.5e-140
Smith-Waterman score: 2281; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)
10 20 30 40 50 60
pF1KE1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR
250 260 270 280 290 300
310 320 330 340
pF1KE1 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH
::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH
310 320 330 340
>>XP_011535440 (OMIM: 114480,600675,613972) PREDICTED: D (346 aa)
initn: 2281 init1: 2281 opt: 2281 Z-score: 2644.1 bits: 497.7 E(85289): 1.5e-140
Smith-Waterman score: 2281; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)
10 20 30 40 50 60
pF1KE1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR
250 260 270 280 290 300
310 320 330 340
pF1KE1 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH
::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH
310 320 330 340
>>NP_001308738 (OMIM: 602948) DNA repair protein RAD51 h (347 aa)
initn: 282 init1: 164 opt: 315 Z-score: 368.4 bits: 76.6 E(85289): 8.9e-14
Smith-Waterman score: 339; 27.4% identity (57.0% similar) in 351 aa overlap (3-337:6-342)
10 20 30 40 50
pF1KE1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHL
: . :. .. ... .. . .. : .: .: ..:.:: : .:: .: .
NP_001 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RA
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 RGSSILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLA
. .. :: .. :. . :: .:: :.::. ..::..: . ::::.
NP_001 CAPKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 LQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFG
... . . .: . ::::...::: ::.:: .:: .. .. :: . :: .
NP_001 IMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTS----
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 SQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRAR
:.. . . : .:. ... ..:.:. .::..::::. : :::.: .. : .
NP_001 SKVHLYRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNK
180 190 200 210 220 230
240 250 260 270 280
pF1KE1 HLQSLGATLRELSSAFQSPVLCINQVTE----AMEEQGAAHGP---LGFWDER-----VS
: ...:. :. :. ::. ::.: :. :. .: :.. . :
NP_001 FLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVI
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE1 PALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTP
::: ::.... .::. . : :. : . . ..: : .: :::. ::.
NP_001 AALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGLVLQG
300 310 320 330 340
pF1KE1 GTQSH
NP_001 L
>>NP_001308739 (OMIM: 602948) DNA repair protein RAD51 h (347 aa)
initn: 282 init1: 164 opt: 315 Z-score: 368.4 bits: 76.6 E(85289): 8.9e-14
Smith-Waterman score: 339; 27.4% identity (57.0% similar) in 351 aa overlap (3-337:6-342)
10 20 30 40 50
pF1KE1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHL
: . :. .. ... .. . .. : .: .: ..:.:: : .:: .: .
NP_001 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RA
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 RGSSILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLA
. .. :: .. :. . :: .:: :.::. ..::..: . ::::.
NP_001 CAPKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 LQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFG
... . . .: . ::::...::: ::.:: .:: .. .. :: . :: .
NP_001 IMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTS----
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 SQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRAR
:.. . . : .:. ... ..:.:. .::..::::. : :::.: .. : .
NP_001 SKVHLYRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNK
180 190 200 210 220 230
240 250 260 270 280
pF1KE1 HLQSLGATLRELSSAFQSPVLCINQVTE----AMEEQGAAHGP---LGFWDER-----VS
: ...:. :. :. ::. ::.: :. :. .: :.. . :
NP_001 FLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVI
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE1 PALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTP
::: ::.... .::. . : :. : . . ..: : .: :::. ::.
NP_001 AALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGLVLQG
300 310 320 330 340
pF1KE1 GTQSH
NP_001 L
>>NP_001308747 (OMIM: 602948) DNA repair protein RAD51 h (347 aa)
initn: 282 init1: 164 opt: 315 Z-score: 368.4 bits: 76.6 E(85289): 8.9e-14
Smith-Waterman score: 339; 27.4% identity (57.0% similar) in 351 aa overlap (3-337:6-342)
10 20 30 40 50
pF1KE1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHL
: . :. .. ... .. . .. : .: .: ..:.:: : .:: .: .
NP_001 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RA
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 RGSSILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLA
. .. :: .. :. . :: .:: :.::. ..::..: . ::::.
NP_001 CAPKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 LQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFG
... . . .: . ::::...::: ::.:: .:: .. .. :: . :: .
NP_001 IMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTS----
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 SQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRAR
:.. . . : .:. ... ..:.:. .::..::::. : :::.: .. : .
NP_001 SKVHLYRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNK
180 190 200 210 220 230
240 250 260 270 280
pF1KE1 HLQSLGATLRELSSAFQSPVLCINQVTE----AMEEQGAAHGP---LGFWDER-----VS
: ...:. :. :. ::. ::.: :. :. .: :.. . :
NP_001 FLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVI
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE1 PALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTP
::: ::.... .::. . : :. : . . ..: : .: :::. ::.
NP_001 AALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGLVLQG
300 310 320 330 340
pF1KE1 GTQSH
NP_001 Q
>>NP_001308748 (OMIM: 602948) DNA repair protein RAD51 h (348 aa)
initn: 282 init1: 164 opt: 315 Z-score: 368.3 bits: 76.6 E(85289): 8.9e-14
Smith-Waterman score: 339; 27.4% identity (57.0% similar) in 351 aa overlap (3-337:6-342)
10 20 30 40 50
pF1KE1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHL
: . :. .. ... .. . .. : .: .: ..:.:: : .:: .: .
NP_001 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RA
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 RGSSILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLA
. .. :: .. :. . :: .:: :.::. ..::..: . ::::.
NP_001 CAPKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 LQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFG
... . . .: . ::::...::: ::.:: .:: .. .. :: . :: .
NP_001 IMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTS----
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 SQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRAR
:.. . . : .:. ... ..:.:. .::..::::. : :::.: .. : .
NP_001 SKVHLYRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNK
180 190 200 210 220 230
240 250 260 270 280
pF1KE1 HLQSLGATLRELSSAFQSPVLCINQVTE----AMEEQGAAHGP---LGFWDER-----VS
: ...:. :. :. ::. ::.: :. :. .: :.. . :
NP_001 FLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVI
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE1 PALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTP
::: ::.... .::. . : :. : . . ..: : .: :::. ::.
NP_001 AALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGLVLQA
300 310 320 330 340
pF1KE1 GTQSH
NP_001 GK
>>NP_002868 (OMIM: 602948) DNA repair protein RAD51 homo (350 aa)
initn: 282 init1: 164 opt: 315 Z-score: 368.3 bits: 76.6 E(85289): 8.9e-14
Smith-Waterman score: 339; 27.4% identity (57.0% similar) in 351 aa overlap (3-337:6-342)
10 20 30 40 50
pF1KE1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHL
: . :. .. ... .. . .. : .: .: ..:.:: : .:: .: .
NP_002 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RA
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 RGSSILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLA
. .. :: .. :. . :: .:: :.::. ..::..: . ::::.
NP_002 CAPKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 LQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFG
... . . .: . ::::...::: ::.:: .:: .. .. :: . :: .
NP_002 IMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTS----
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 SQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRAR
:.. . . : .:. ... ..:.:. .::..::::. : :::.: .. : .
NP_002 SKVHLYRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNK
180 190 200 210 220 230
240 250 260 270 280
pF1KE1 HLQSLGATLRELSSAFQSPVLCINQVTE----AMEEQGAAHGP---LGFWDER-----VS
: ...:. :. :. ::. ::.: :. :. .: :.. . :
NP_002 FLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVI
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE1 PALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTP
::: ::.... .::. . : :. : . . ..: : .: :::. ::.
NP_002 AALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGLVLQA
300 310 320 330 340
pF1KE1 GTQSH
NP_002 YGNS
350
346 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:46:55 2016 done: Sat Nov 5 07:46:56 2016
Total Scan time: 8.900 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]