Result of FASTA (ccds) for
pF1KE1049
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1049, 225 aa
1>>>pF1KE1049 225 - 225 aa - 225 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6374+/-0.000782; mu= 12.7211+/- 0.048
mean_var=79.6963+/-16.697, 0's: 0 Z-trim(110.2): 176 B-trim: 681 in 2/49
Lambda= 0.143666
statistics sampled from 11201 (11404) to 11201 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.35), width: 16
Scan time: 2.070
The best scores are: opt bits E(32554)
CCDS5210.1 RAB32 gene_id:10981|Hs108|chr6 ( 225) 1504 320.7 4.6e-88
CCDS8281.1 RAB38 gene_id:23682|Hs108|chr11 ( 211) 922 200.1 9e-52
CCDS1459.1 RAB29 gene_id:8934|Hs108|chr1 ( 203) 713 156.8 9.6e-39
CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2 ( 200) 451 102.5 2.1e-22
CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1 ( 203) 432 98.5 3.3e-21
CCDS76691.1 RAB15 gene_id:376267|Hs108|chr14 ( 212) 426 97.3 8e-21
CCDS44301.1 RAB29 gene_id:8934|Hs108|chr1 ( 179) 424 96.8 9.3e-21
CCDS73011.1 RAB7B gene_id:338382|Hs108|chr1 ( 199) 408 93.5 1e-19
CCDS33850.1 RAB43 gene_id:339122|Hs108|chr3 ( 212) 404 92.7 1.9e-19
CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 ( 201) 402 92.3 2.4e-19
CCDS3052.1 RAB7A gene_id:7879|Hs108|chr3 ( 207) 400 91.9 3.3e-19
CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15 ( 207) 394 90.6 7.8e-19
CCDS42410.1 RAB12 gene_id:201475|Hs108|chr18 ( 244) 392 90.3 1.2e-18
CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19 ( 207) 389 89.6 1.6e-18
CCDS44302.1 RAB29 gene_id:8934|Hs108|chr1 ( 131) 385 88.7 2e-18
CCDS10212.1 RAB11A gene_id:8766|Hs108|chr15 ( 216) 386 89.0 2.6e-18
CCDS34762.2 RAB19 gene_id:401409|Hs108|chr7 ( 217) 383 88.4 3.9e-18
CCDS12201.1 RAB11B gene_id:9230|Hs108|chr19 ( 218) 382 88.2 4.6e-18
CCDS3976.1 RAB3C gene_id:115827|Hs108|chr5 ( 227) 381 88.0 5.4e-18
CCDS12372.1 RAB3A gene_id:5864|Hs108|chr19 ( 220) 379 87.6 7.1e-18
CCDS9570.1 RAB2B gene_id:84932|Hs108|chr14 ( 216) 378 87.3 8.1e-18
CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2 ( 205) 374 86.5 1.4e-17
CCDS6827.1 RAB14 gene_id:51552|Hs108|chr9 ( 215) 374 86.5 1.4e-17
CCDS560.1 RAB3B gene_id:5865|Hs108|chr1 ( 219) 373 86.3 1.7e-17
CCDS6175.1 RAB2A gene_id:5862|Hs108|chr8 ( 212) 372 86.1 1.9e-17
CCDS12257.1 RAB3D gene_id:9545|Hs108|chr19 ( 219) 371 85.9 2.2e-17
CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11 ( 201) 367 85.0 3.7e-17
CCDS14766.1 RAB39B gene_id:116442|Hs108|chrX ( 213) 365 84.6 5.2e-17
CCDS3082.1 RAB6B gene_id:51560|Hs108|chr3 ( 208) 364 84.4 5.8e-17
CCDS33030.1 RAB4B gene_id:53916|Hs108|chr19 ( 213) 364 84.4 6e-17
CCDS14156.1 RAB9A gene_id:9367|Hs108|chrX ( 201) 361 83.8 8.7e-17
CCDS8223.1 RAB6A gene_id:5870|Hs108|chr11 ( 208) 361 83.8 9e-17
CCDS31050.1 RAB4A gene_id:5867|Hs108|chr1 ( 218) 361 83.8 9.3e-17
CCDS8224.1 RAB6A gene_id:5870|Hs108|chr11 ( 208) 358 83.2 1.4e-16
CCDS44803.1 CRACR2A gene_id:84766|Hs108|chr12 ( 731) 362 84.4 2.2e-16
CCDS4962.1 RAB23 gene_id:51715|Hs108|chr6 ( 237) 354 82.4 2.7e-16
CCDS41413.1 RAB25 gene_id:57111|Hs108|chr1 ( 213) 353 82.2 2.9e-16
CCDS14515.1 RAB9B gene_id:51209|Hs108|chrX ( 201) 346 80.7 7.5e-16
CCDS9003.1 RAB21 gene_id:23011|Hs108|chr12 ( 225) 339 79.3 2.3e-15
CCDS8264.1 RAB30 gene_id:27314|Hs108|chr11 ( 203) 338 79.0 2.4e-15
CCDS7155.1 RAB18 gene_id:22931|Hs108|chr10 ( 206) 338 79.0 2.4e-15
CCDS8338.1 RAB39A gene_id:54734|Hs108|chr11 ( 217) 336 78.6 3.4e-15
CCDS3747.1 RAB33B gene_id:83452|Hs108|chr4 ( 229) 336 78.7 3.5e-15
CCDS11419.1 RAB5C gene_id:5878|Hs108|chr17 ( 216) 335 78.4 3.9e-15
CCDS58551.1 RAB5C gene_id:5878|Hs108|chr17 ( 249) 335 78.5 4.4e-15
CCDS10460.1 RAB26 gene_id:25837|Hs108|chr16 ( 256) 334 78.3 5.1e-15
CCDS14621.1 RAB33A gene_id:9363|Hs108|chrX ( 237) 332 77.8 6.4e-15
CCDS45826.1 RAB31 gene_id:11031|Hs108|chr18 ( 195) 328 77.0 9.8e-15
CCDS76258.1 RAB7B gene_id:338382|Hs108|chr1 ( 157) 326 76.5 1.1e-14
CCDS58373.1 RAB11A gene_id:8766|Hs108|chr15 ( 155) 320 75.2 2.6e-14
>>CCDS5210.1 RAB32 gene_id:10981|Hs108|chr6 (225 aa)
initn: 1504 init1: 1504 opt: 1504 Z-score: 1694.5 bits: 320.7 E(32554): 4.6e-88
Smith-Waterman score: 1504; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:1-225)
10 20 30 40 50 60
pF1KE1 MAGGGAGDPGLGAAAAPAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MAGGGAGDPGLGAAAAPAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 DFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 KSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 KSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNIN
130 140 150 160 170 180
190 200 210 220
pF1KE1 IEEAARFLVEKILVNHQSFPNEENDVDKIKLDQETLRAENKSQCC
:::::::::::::::::::::::::::::::::::::::::::::
CCDS52 IEEAARFLVEKILVNHQSFPNEENDVDKIKLDQETLRAENKSQCC
190 200 210 220
>>CCDS8281.1 RAB38 gene_id:23682|Hs108|chr11 (211 aa)
initn: 911 init1: 720 opt: 922 Z-score: 1042.9 bits: 200.1 E(32554): 9e-52
Smith-Waterman score: 922; 66.8% identity (87.0% similar) in 208 aa overlap (18-224:3-208)
10 20 30 40 50 60
pF1KE1 MAGGGAGDPGLGAAAAPAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGV
::. .:::.:.::::.::::::::::::::: ::.::::::::
CCDS82 MQAPH-KEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGV
10 20 30 40
70 80 90 100 110 120
pF1KE1 DFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKW
:::::::.:: .:.::::::::::::::::::::::.::.:::.:::..: .::::: ::
CCDS82 DFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKW
50 60 70 80 90 100
130 140 150 160 170
pF1KE1 KSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSQSPS-QVDQFCKEHGFAGWFETSAKDNI
:.:::::. ::::.:. .:::::::::.:: .. . ..:::::::::.::::::::.::
CCDS82 KNDLDSKLSLPNGKPVSVVLLANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENI
110 120 130 140 150 160
180 190 200 210 220
pF1KE1 NIEEAARFLVEKILVNHQSFPNEENDVDKIKLDQETLRAENKSQCC
::.::.: ::..::.:. .. : . : .: . .. . : :
CCDS82 NIDEASRCLVKHILANECDL-MESIEPDVVKPHLTSTKVASCSGCAKS
170 180 190 200 210
>>CCDS1459.1 RAB29 gene_id:8934|Hs108|chr1 (203 aa)
initn: 685 init1: 563 opt: 713 Z-score: 809.1 bits: 156.8 E(32554): 9.6e-39
Smith-Waterman score: 713; 50.0% identity (77.9% similar) in 208 aa overlap (21-225:3-203)
10 20 30 40 50 60
pF1KE1 MAGGGAGDPGLGAAAAPAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGV
.:.:::::::.:. .:::::...:: .. ::.::..:.::
CCDS14 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGV
10 20 30 40
70 80 90 100 110 120
pF1KE1 DFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKW
:::::::.:.. .:::::::::::::: .:::.::..: . ..::.. ..:: .:
CCDS14 DFALKVLQWSDYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRW
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE1 KSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNIN
:.:::::. :::: :.: .::::::: . . : .:.:.: ::.::.:: :::.:.: :
CCDS14 KQDLDSKLTLPNGEPVPCLLLANKCDLSP-WAVSRDQIDRFSKENGFTGWTETSVKENKN
110 120 130 140 150 160
190 200 210 220
pF1KE1 IEEAARFLVEKILVNHQSFPNEENDVDKIKLDQETLRAENKSQ---CC
:.:: : :.::.. : .:. ... . . . ..::. ::
CCDS14 INEAMRVLIEKMM------RNSTEDIMSLSTQGDYINLQTKSSSWSCC
170 180 190 200
>>CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2 (200 aa)
initn: 445 init1: 177 opt: 451 Z-score: 515.7 bits: 102.5 E(32554): 2.1e-22
Smith-Waterman score: 451; 36.5% identity (68.3% similar) in 208 aa overlap (18-225:2-200)
10 20 30 40 50 60
pF1KE1 MAGGGAGDPGLGAAAAPAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGV
: .: . :::.:.::. ::::: .. :. . :. . .:::.
CCDS17 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGI
10 20 30 40
70 80 90 100 110 120
pF1KE1 DFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKW
:: .:... ... ..::.:: :::::: ..: ::. :.: ..:.::. ...:: . ::
CCDS17 DFKIKTVELQGKK-IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKW
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE1 KSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNIN
..: ... . .::.::::.. .. .:. .:::. .:::::: :::
CCDS17 LRNIDEHAN----EDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIR-FFETSAKANIN
110 120 130 140 150
190 200 210 220
pF1KE1 IEEAARFLVEKILVNHQSFPNEENDVDKIKLDQETLRAENKSQCC
::.: :.: :: .. : .: . ... ... . ::.::
CCDS17 IEKAFLTLAEDIL---RKTPVKEPNSENVDISSGGGVTGWKSKCC
160 170 180 190 200
>>CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1 (203 aa)
initn: 425 init1: 163 opt: 432 Z-score: 494.3 bits: 98.5 E(32554): 3.3e-21
Smith-Waterman score: 432; 36.0% identity (71.4% similar) in 203 aa overlap (23-224:6-200)
10 20 30 40 50 60
pF1KE1 MAGGGAGDPGLGAAAAPAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGV
.::::.:.::. ::::: .: :.... :.. : .:::.
CCDS10 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGI
10 20 30 40
70 80 90 100 110 120
pF1KE1 DFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKW
:: ..... ... ..::.:: :::::: ..: .::. :.: ..:.::. ..:: . .:
CCDS10 DFKIRTVDIEGKK-IKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNW
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE1 KSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNIN
... : . : . .::.::::.. . . :.:.. .:::. .::::::...:
CCDS10 MKSI--KENASAG--VERLLLGNKCDMEAKRKVQKEQADKLAREHGIR-FFETSAKSSMN
110 120 130 140 150
190 200 210 220
pF1KE1 IEEAARFLVEKILVNHQSFPNEENDVDKI-KLDQETLRAENKSQCC
..:: :.. ::. .: . .. .: . : .: .: ..:
CCDS10 VDEAFSSLARDILL--KSGGRRSGNGNKPPSTDLKTCDKKNTNKCSLG
160 170 180 190 200
>>CCDS76691.1 RAB15 gene_id:376267|Hs108|chr14 (212 aa)
initn: 352 init1: 201 opt: 426 Z-score: 487.3 bits: 97.3 E(32554): 8e-21
Smith-Waterman score: 426; 35.9% identity (67.5% similar) in 209 aa overlap (25-225:8-210)
10 20 30 40 50 60
pF1KE1 MAGGGAGDPGLGAAAAPAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGV
::..:.::. ::::: .. :.. . : . . .::::
CCDS76 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGV
10 20 30 40
70 80 90 100 110 120
pF1KE1 DFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKW
:: .:... :. ::.:.:: :::::. ..:. ::..: : :.:.::: ... ..::
CCDS76 DFKMKTIEVDG-IKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKW
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE1 KSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNIN
::.: . :.: . .:..:: :... . . : .:. ::.:. ..:::: :.:
CCDS76 VSDVDE--YAPEG--VQKILIGNKADEEQKRQVGREQGQQLAKEYGM-DFYETSACTNLN
110 120 130 140 150
190 200 210 220
pF1KE1 IEEAARFLVEKILVNHQSFPN-----EENDVDKIKLDQETLRAE---NKSQCC
:.:. :.: .: :.. . :.. .:..: . : :.:. :
CCDS76 IKESFTRLTELVLQAHRKELEGLRMRASNELALAELEEEEGKPEGPANSSKTCWC
160 170 180 190 200 210
>>CCDS44301.1 RAB29 gene_id:8934|Hs108|chr1 (179 aa)
initn: 416 init1: 274 opt: 424 Z-score: 486.1 bits: 96.8 E(32554): 9.3e-21
Smith-Waterman score: 531; 41.3% identity (67.3% similar) in 208 aa overlap (21-225:3-179)
10 20 30 40 50 60
pF1KE1 MAGGGAGDPGLGAAAAPAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGV
.:.:::::::.:. .:::::...:: .. ::.::..:.:
CCDS44 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG-
10 20 30 40
70 80 90 100 110 120
pF1KE1 DFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKW
::::: .:::.::..: . ..::.. ..:: .:
CCDS44 -----------------------GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRW
50 60 70
130 140 150 160 170 180
pF1KE1 KSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNIN
:.:::::. :::: :.: .::::::: . . : .:.:.: ::.::.:: :::.:.: :
CCDS44 KQDLDSKLTLPNGEPVPCLLLANKCDLSP-WAVSRDQIDRFSKENGFTGWTETSVKENKN
80 90 100 110 120 130
190 200 210 220
pF1KE1 IEEAARFLVEKILVNHQSFPNEENDVDKIKLDQETLRAENKSQ---CC
:.:: : :.::.. : .:. ... . . . ..::. ::
CCDS44 INEAMRVLIEKMM------RNSTEDIMSLSTQGDYINLQTKSSSWSCC
140 150 160 170
>>CCDS73011.1 RAB7B gene_id:338382|Hs108|chr1 (199 aa)
initn: 360 init1: 135 opt: 408 Z-score: 467.5 bits: 93.5 E(32554): 1e-19
Smith-Waterman score: 424; 35.3% identity (73.1% similar) in 201 aa overlap (26-225:9-199)
10 20 30 40 50 60
pF1KE1 MAGGGAGDPGLGAAAAPAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGV
.:....: .::::::....:::. : ..:..:.:.
CCDS73 MNPRKKVDLKLIIVGAIGVGKTSLLHQYVHKTFYEEYQTTLGA
10 20 30 40
70 80 90 100 110 120
pF1KE1 DFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKW
.. :.. . :: .::.:: .::::: .:. ..:: . : ...::.. .:::. :
CCDS73 SILSKIIILGDTTL-KLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIW
50 60 70 80 90 100
130 140 150 160 170
pF1KE1 KSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSQSPSQVDQ-FCKEHGFAGWFETSAKDNI
..:. .:. .: . : :::.:: : . . :..: : .:.:. . .::.:::..:
CCDS73 RGDVLAKI-VPMEQSYPMVLLGNKIDLA--DRKVPQEVAQGWCREKDIP-YFEVSAKNDI
110 120 130 140 150
180 190 200 210 220
pF1KE1 NIEEAARFLVEKILVNHQSFPNEENDVDKIKLDQETLRAENKSQCC
:. .: ..:. . : .::. :.. ...:::. . ...:.::
CCDS73 NVVQAFEMLASRALSRYQSIL-ENHLTESIKLSPD----QSRSRCC
160 170 180 190
>>CCDS33850.1 RAB43 gene_id:339122|Hs108|chr3 (212 aa)
initn: 395 init1: 169 opt: 404 Z-score: 462.6 bits: 92.7 E(32554): 1.9e-19
Smith-Waterman score: 404; 35.2% identity (67.6% similar) in 216 aa overlap (1-216:1-204)
10 20 30 40 50 60
pF1KE1 MAGGGAGDPGLGAAAAPAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGV
::: : : :: : : . :::....:. .:::: ...:. ::.. .::::
CCDS33 MAGPGPG-PG-----DP-DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGV
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 DFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKW
::..:.:. ... :.::.:: :::::: ..:. ::. : ::....::.. :.: .: .:
CCDS33 DFTMKTLEIQGKR-VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHW
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 KSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNIN
: :. :: : .:..:: : .. : ...... ... . .::::::. :
CCDS33 IED----VRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSN
120 130 140 150 160
190 200 210 220
pF1KE1 IEEAARFLVEKILVNHQSFPNEENDVDKIKLDQETLRAENKSQCC
.::: .. .... : . :.. :.:.:... .
CCDS33 VEEAFLRVATELIMRHGGPLFSEKSPDHIQLNSKDIGEGWGCGC
170 180 190 200 210
>>CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 (201 aa)
initn: 376 init1: 155 opt: 402 Z-score: 460.7 bits: 92.3 E(32554): 2.4e-19
Smith-Waterman score: 402; 33.5% identity (68.0% similar) in 206 aa overlap (23-225:6-201)
10 20 30 40 50 60
pF1KE1 MAGGGAGDPGLGAAAAPAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGV
.::::.:.::. ::::.:.. :.. . :: : .::::
CCDS41 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGV
10 20 30 40
70 80 90 100 110 120
pF1KE1 DFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKW
:: ..... ... :.::.:: :::::: ..: .::. . :..::.:.. . .: : .:
CCDS41 DFKIRTVEINGEK-VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRW
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE1 KSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNIN
.... : . . .:..:: :. . . .. .: . :. ::::::.:.:
CCDS41 LHEINQ-----NCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQ-LFETSAKENVN
110 120 130 140 150
190 200 210 220
pF1KE1 IEEAARFLVEKILVNHQ---SFPNEENDVDKIKLDQETLRAENKSQCC
.:: ..: .: .. . ..... : .:: ... : :..::
CCDS41 VEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTKNSKR---KKRCC
160 170 180 190 200
225 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:48:02 2016 done: Sat Nov 5 07:48:02 2016
Total Scan time: 2.070 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]