FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1067, 506 aa
  1>>>pF1KE1067 506 - 506 aa - 506 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6363+/-0.000802; mu= 8.1050+/- 0.049
 mean_var=130.4557+/-25.877, 0's: 0 Z-trim(112.3): 34  B-trim: 2 in 1/50
 Lambda= 0.112290
 statistics sampled from 13025 (13051) to 13025 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.401), width:  16
 Scan time:  3.860

The best scores are:                                      opt bits E(32554)
CCDS1237.1 NOS1AP gene_id:9722|Hs108|chr1          ( 506) 3331 550.7 1.4e-156
CCDS53421.1 NOS1AP gene_id:9722|Hs108|chr1         ( 501) 3284 543.1 2.7e-154
CCDS44267.1 NOS1AP gene_id:9722|Hs108|chr1         ( 211) 1282 218.6 5.4e-57


>>CCDS1237.1 NOS1AP gene_id:9722|Hs108|chr1               (506 aa)
 initn: 3331 init1: 3331 opt: 3331  Z-score: 2924.8  bits: 550.7 E(32554): 1.4e-156
Smith-Waterman score: 3331; 100.0% identity (100.0% similar) in 506 aa overlap (1-506:1-506)

               10        20        30        40        50        60
pF1KE1 MPSKTKYNLVDDGHDLRIPLHNEDAFQHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MPSKTKYNLVDDGHDLRIPLHNEDAFQHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIRY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EFKAKNIKKKKVSIMVSVDGVKVILKKKKKLLLLQKKEWTWDESKMLVMQDPIYRIFYVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EFKAKNIKKKKVSIMVSVDGVKVILKKKKKLLLLQKKEWTWDESKMLVMQDPIYRIFYVS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 HDSQDLKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HDSQDLKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQNA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 DGQEDGESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVTDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DGQEDGESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVTDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 DAVGKEGGSHTGSKVSHPQEPMLTASPRMLLPSSSSKPPGLGTETPLSTHHQMQLLQQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DAVGKEGGSHTGSKVSHPQEPMLTASPRMLLPSSSSKPPGLGTETPLSTHHQMQLLQQLL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 QQQQQQTQVAVAQVHLLKDQLAAEAAARLEAQARVHQLLLQNKDMLQHISLLVKQVQELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QQQQQQTQVAVAQVHLLKDQLAAEAAARLEAQARVHQLLLQNKDMLQHISLLVKQVQELE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LKLSGQNAMGSQDSLLEITFRSGALPVLCDPTTPKPEDLHSPPLGAGLADFAHPAGSPLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LKLSGQNAMGSQDSLLEITFRSGALPVLCDPTTPKPEDLHSPPLGAGLADFAHPAGSPLG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 RRDCLVKLECFRFLPPEDTPPPAQGEALLGGLELIKFRESGIASEYESNTDESEERDSWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RRDCLVKLECFRFLPPEDTPPPAQGEALLGGLELIKFRESGIASEYESNTDESEERDSWS
              430       440       450       460       470       480

              490       500      
pF1KE1 QEELPRLLNVLQRQELGDGLDDEIAV
       ::::::::::::::::::::::::::
CCDS12 QEELPRLLNVLQRQELGDGLDDEIAV
              490       500      

>>CCDS53421.1 NOS1AP gene_id:9722|Hs108|chr1              (501 aa)
 initn: 2718 init1: 2718 opt: 3284  Z-score: 2883.7  bits: 543.1 E(32554): 2.7e-154
Smith-Waterman score: 3284; 99.0% identity (99.0% similar) in 506 aa overlap (1-506:1-501)

               10        20        30        40        50        60
pF1KE1 MPSKTKYNLVDDGHDLRIPLHNEDAFQHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MPSKTKYNLVDDGHDLRIPLHNEDAFQHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIRY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EFKAKNIKKKKVSIMVSVDGVKVILKKKKKLLLLQKKEWTWDESKMLVMQDPIYRIFYVS
       ::::::::::::::::::::::::::::::     :::::::::::::::::::::::::
CCDS53 EFKAKNIKKKKVSIMVSVDGVKVILKKKKK-----KKEWTWDESKMLVMQDPIYRIFYVS
               70        80        90            100       110     

              130       140       150       160       170       180
pF1KE1 HDSQDLKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 HDSQDLKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQNA
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KE1 DGQEDGESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVTDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DGQEDGESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVTDL
         180       190       200       210       220       230     

              250       260       270       280       290       300
pF1KE1 DAVGKEGGSHTGSKVSHPQEPMLTASPRMLLPSSSSKPPGLGTETPLSTHHQMQLLQQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DAVGKEGGSHTGSKVSHPQEPMLTASPRMLLPSSSSKPPGLGTETPLSTHHQMQLLQQLL
         240       250       260       270       280       290     

              310       320       330       340       350       360
pF1KE1 QQQQQQTQVAVAQVHLLKDQLAAEAAARLEAQARVHQLLLQNKDMLQHISLLVKQVQELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QQQQQQTQVAVAQVHLLKDQLAAEAAARLEAQARVHQLLLQNKDMLQHISLLVKQVQELE
         300       310       320       330       340       350     

              370       380       390       400       410       420
pF1KE1 LKLSGQNAMGSQDSLLEITFRSGALPVLCDPTTPKPEDLHSPPLGAGLADFAHPAGSPLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LKLSGQNAMGSQDSLLEITFRSGALPVLCDPTTPKPEDLHSPPLGAGLADFAHPAGSPLG
         360       370       380       390       400       410     

              430       440       450       460       470       480
pF1KE1 RRDCLVKLECFRFLPPEDTPPPAQGEALLGGLELIKFRESGIASEYESNTDESEERDSWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RRDCLVKLECFRFLPPEDTPPPAQGEALLGGLELIKFRESGIASEYESNTDESEERDSWS
         420       430       440       450       460       470     

              490       500      
pF1KE1 QEELPRLLNVLQRQELGDGLDDEIAV
       ::::::::::::::::::::::::::
CCDS53 QEELPRLLNVLQRQELGDGLDDEIAV
         480       490       500 

>>CCDS44267.1 NOS1AP gene_id:9722|Hs108|chr1              (211 aa)
 initn: 1282 init1: 1282 opt: 1282  Z-score: 1136.7  bits: 218.6 E(32554): 5.4e-57
Smith-Waterman score: 1282; 100.0% identity (100.0% similar) in 194 aa overlap (313-506:18-211)

            290       300       310       320       330       340  
pF1KE1 TETPLSTHHQMQLLQQLLQQQQQQTQVAVAQVHLLKDQLAAEAAARLEAQARVHQLLLQN
                                     ::::::::::::::::::::::::::::::
CCDS44              MSLSSLCPVFSAAASSLQVHLLKDQLAAEAAARLEAQARVHQLLLQN
                            10        20        30        40       

            350       360       370       380       390       400  
pF1KE1 KDMLQHISLLVKQVQELELKLSGQNAMGSQDSLLEITFRSGALPVLCDPTTPKPEDLHSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KDMLQHISLLVKQVQELELKLSGQNAMGSQDSLLEITFRSGALPVLCDPTTPKPEDLHSP
        50        60        70        80        90       100       

            410       420       430       440       450       460  
pF1KE1 PLGAGLADFAHPAGSPLGRRDCLVKLECFRFLPPEDTPPPAQGEALLGGLELIKFRESGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PLGAGLADFAHPAGSPLGRRDCLVKLECFRFLPPEDTPPPAQGEALLGGLELIKFRESGI
       110       120       130       140       150       160       

            470       480       490       500      
pF1KE1 ASEYESNTDESEERDSWSQEELPRLLNVLQRQELGDGLDDEIAV
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ASEYESNTDESEERDSWSQEELPRLLNVLQRQELGDGLDDEIAV
       170       180       190       200       210 




506 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:31:26 2016 done: Sat Nov  5 19:31:26 2016
 Total Scan time:  3.860 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]