FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1068, 577 aa
  1>>>pF1KE1068 577 - 577 aa - 577 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.3173+/-0.00107; mu= 1.1461+/- 0.064
 mean_var=219.4315+/-43.997, 0's: 0 Z-trim(111.0): 11  B-trim: 0 in 0/51
 Lambda= 0.086581
 statistics sampled from 12067 (12072) to 12067 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.371), width:  16
 Scan time:  4.070

The best scores are:                                      opt bits E(32554)
CCDS45855.1 KIAA1328 gene_id:57536|Hs108|chr18     ( 577) 3829 491.3 1.3e-138


>>CCDS45855.1 KIAA1328 gene_id:57536|Hs108|chr18          (577 aa)
 initn: 3829 init1: 3829 opt: 3829  Z-score: 2601.8  bits: 491.3 E(32554): 1.3e-138
Smith-Waterman score: 3829; 99.7% identity (100.0% similar) in 577 aa overlap (1-577:1-577)

               10        20        30        40        50        60
pF1KE1 MADVAGPSRPSAAAFWSRDFSDEEQSVVYVPGISAEGNVRSRHKLMSPKADVKLKTSRVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MADVAGPSRPSAAAFWSRDFSDEEQSVVYVPGISAEGNVRSRHKLMSPKADVKLKTSRVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DVSISMESLKGTGDSADEQNSCRGEIKSASLKDLCLEDKRRIANLIKELARVSEEKEVTE
       :.:::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DASISMESLKGTGDSVDEQNSCRGEIKSASLKDLCLEDKRRIANLIKELARVSEEKEVTE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 ERLKAEQESFEKKIRQLEEQNELIIKEREALQLQYRECQELLSLYQKYLSEQQEKLTMSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ERLKAEQESFEKKIRQLEEQNELIIKEREALQLQYRECQELLSLYQKYLSEQQEKLTMSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 SELGAARMQEQQVSSRKSTLQCSSVELDGSYLSIARPQTYYQTKQRPKSAVQDSASESLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SELGAARMQEQQVSSRKSTLQCSSVELDGSYLSIARPQTYYQTKQRPKSAVQDSASESLI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 AFRNNSLKPVTLHHPKDDLDKIPSETTTCNCESPGRKPAVPTEKMPQEELHMKECPHLKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AFRNNSLKPVTLHHPKDDLDKIPSETTTCNCESPGRKPAVPTEKMPQEELHMKECPHLKP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 TPSQCCGHRLAADRVHDSHPTNMTPQHPKTHPESCSYCRLSWASLVHGGGALQPIETLKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TPSQCCGHRLAADRVHDSHPTNMTPQHPKTHPESCSYCRLSWASLVHGGGALQPIETLKK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 QISEDRKQQLMLQKMELEIEKERLQHLLAQQETKLLLKQQQLHQSRLDYNCLLKSNCDGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QISEDRKQQLMLQKMELEIEKERLQHLLAQQETKLLLKQQQLHQSRLDYNCLLKSNCDGW
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 LLGTSSSIKKHQDPPNSGENRKERKTVGFHSHMKDDAQWSCQKKDTCRPQRGTVTGVRKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LLGTSSSIKKHQDPPNSGENRKERKTVGFHSHMKDDAQWSCQKKDTCRPQRGTVTGVRKD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 ASTSPMPTGSLKDFVTTASPSLQHTTSRYETSLLDLVQSLSPNSAPKPQRYPSREAGAWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ASTSPMPTGSLKDFVTTASPSLQHTTSRYETSLLDLVQSLSPNSAPKPQRYPSREAGAWN
              490       500       510       520       530       540

              550       560       570       
pF1KE1 HGTFRLSPLKSTRKKMGMHRTPEELEENQILEDIFFI
       :::::::::::::::::::::::::::::::::::::
CCDS45 HGTFRLSPLKSTRKKMGMHRTPEELEENQILEDIFFI
              550       560       570       




577 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:30:48 2016 done: Sat Nov  5 19:30:49 2016
 Total Scan time:  4.070 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]