FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1069, 177 aa
  1>>>pF1KE1069 177 - 177 aa - 177 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7162+/-0.000662; mu= 11.1902+/- 0.040
 mean_var=73.3499+/-14.272, 0's: 0 Z-trim(111.4): 17  B-trim: 59 in 1/50
 Lambda= 0.149753
 statistics sampled from 12349 (12362) to 12349 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.38), width:  16
 Scan time:  2.130

The best scores are:                                      opt bits E(32554)
CCDS42225.1 TUSC5 gene_id:286753|Hs108|chr17       ( 177) 1130 252.5   1e-67
CCDS10654.1 PRRT2 gene_id:112476|Hs108|chr16       ( 340)  339 81.7 4.9e-16
CCDS58445.1 PRRT2 gene_id:112476|Hs108|chr16       ( 394)  331 80.0 1.8e-15
CCDS44995.1 TMEM233 gene_id:387890|Hs108|chr12     ( 109)  272 67.0 4.2e-12


>>CCDS42225.1 TUSC5 gene_id:286753|Hs108|chr17            (177 aa)
 initn: 1130 init1: 1130 opt: 1130  Z-score: 1329.3  bits: 252.5 E(32554): 1e-67
Smith-Waterman score: 1130; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)

               10        20        30        40        50        60
pF1KE1 MAHPVQSEFPSAQEPGSAAFLDLPEMEILLTKAENKDDKTLNLSKTLSGPLDLEQNSQGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAHPVQSEFPSAQEPGSAAFLDLPEMEILLTKAENKDDKTLNLSKTLSGPLDLEQNSQGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVACFCPVWPLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVACFCPVWPLN
               70        80        90       100       110       120

              130       140       150       160       170       
pF1KE1 LIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAVTVNFTVQKK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAVTVNFTVQKK
              130       140       150       160       170       

>>CCDS10654.1 PRRT2 gene_id:112476|Hs108|chr16            (340 aa)
 initn: 350 init1: 325 opt: 339  Z-score: 401.4  bits: 81.7 E(32554): 4.9e-16
Smith-Waterman score: 339; 45.7% identity (78.1% similar) in 105 aa overlap (75-176:236-340)

           50        60        70        80        90       100    
pF1KE1 KTLSGPLDLEQNSQGLPFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEA---P
                                     : ::  . ::. ::  .   ..  :.   :
CCDS10 KKSPPANGAPPRVLQQLVEEDRMRRAHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKP
         210       220       230       240       250       260     

             110       120       130       140       150       160 
pF1KE1 RDYLILAVVACFCPVWPLNLIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGI
       :::.:::...::::.::.:.. .  ..:::.:.:::.::::.::::.:.::::. .. :.
CCDS10 RDYIILAILSCFCPMWPVNIVAFAYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGV
         270       280       290       300       310       320     

             170       
pF1KE1 VIIMVAVTVNFTVQKK
       .::... ..:. : : 
CCDS10 LIIIASCVINLGVYK 
         330       340 

>>CCDS58445.1 PRRT2 gene_id:112476|Hs108|chr16            (394 aa)
 initn: 342 init1: 317 opt: 331  Z-score: 391.1  bits: 80.0 E(32554): 1.8e-15
Smith-Waterman score: 331; 45.5% identity (79.2% similar) in 101 aa overlap (75-172:236-336)

           50        60        70        80        90       100    
pF1KE1 KTLSGPLDLEQNSQGLPFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEA---P
                                     : ::  . ::. ::  .   ..  :.   :
CCDS58 KKSPPANGAPPRVLQQLVEEDRMRRAHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKP
         210       220       230       240       250       260     

             110       120       130       140       150       160 
pF1KE1 RDYLILAVVACFCPVWPLNLIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGI
       :::.:::...::::.::.:.. .  ..:::.:.:::.::::.::::.:.::::. .. :.
CCDS58 RDYIILAILSCFCPMWPVNIVAFAYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGV
         270       280       290       300       310       320     

             170                                                   
pF1KE1 VIIMVAVTVNFTVQKK                                            
       .::... ..:.                                                 
CCDS58 LIIIASCVINLGGEWGLGTGRGGMEGLARAALLTPAPALSCLSSLPLLCLSLSPPPPVCP
         330       340       350       360       370       380     

>>CCDS44995.1 TMEM233 gene_id:387890|Hs108|chr12          (109 aa)
 initn: 272 init1: 272 opt: 272  Z-score: 330.8  bits: 67.0 E(32554): 4.2e-12
Smith-Waterman score: 272; 39.2% identity (72.5% similar) in 102 aa overlap (72-173:5-106)

              50        60        70        80        90       100 
pF1KE1 NLSKTLSGPLDLEQNSQGLPFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAP
                                     :: :      .:   ..    .  .:   :
CCDS44                           MSQYAPSPDFKRALDSSPEANTEDDKTEEDVPMP
                                         10        20        30    

             110       120       130       140       150       160 
pF1KE1 RDYLILAVVACFCPVWPLNLIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGI
       ..:: :..:.::::..:.:.. :..:::: .:...:. .::::::: :. ..:. ::.:.
CCDS44 KNYLWLTIVSCFCPAYPINIVALVFSIMSLNSYNDGDYEGARRLGRNAKWVAIASIIIGL
           40        50        60        70        80        90    

             170       
pF1KE1 VIIMVAVTVNFTVQKK
       .:: .. .:.::    
CCDS44 LIIGISCAVHFTRNA 
          100          




177 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:42:14 2016 done: Fri Nov  4 04:42:15 2016
 Total Scan time:  2.130 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]