FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1082, 439 aa
  1>>>pF1KE1082 439 - 439 aa - 439 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4188+/-0.000774; mu= 5.2118+/- 0.047
 mean_var=182.7195+/-36.269, 0's: 0 Z-trim(115.1): 20  B-trim: 37 in 1/53
 Lambda= 0.094882
 statistics sampled from 15687 (15702) to 15687 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.482), width:  16
 Scan time:  3.850

The best scores are:                                      opt bits E(32554)
CCDS6359.2 MYC gene_id:4609|Hs108|chr8             ( 454) 2925 412.1 5.7e-115
CCDS1687.1 MYCN gene_id:4613|Hs108|chr2            ( 464)  468 75.8   1e-13


>>CCDS6359.2 MYC gene_id:4609|Hs108|chr8                  (454 aa)
 initn: 2925 init1: 2925 opt: 2925  Z-score: 2177.6  bits: 412.1 E(32554): 5.7e-115
Smith-Waterman score: 2925; 100.0% identity (100.0% similar) in 439 aa overlap (1-439:16-454)

                              10        20        30        40     
pF1KE1                MPLNVSFTNRNYDLDYDSVQPYFYCDEEENFYQQQQQSELQPPAP
                      :::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MDFFRVVENQQPPATMPLNVSFTNRNYDLDYDSVQPYFYCDEEENFYQQQQQSELQPPAP
               10        20        30        40        50        60

          50        60        70        80        90       100     
pF1KE1 SEDIWKKFELLPTPPLSPSRRSGLCSPSYVAVTPFSLRGDNDGGGGSFSTADQLEMVTEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 SEDIWKKFELLPTPPLSPSRRSGLCSPSYVAVTPFSLRGDNDGGGGSFSTADQLEMVTEL
               70        80        90       100       110       120

         110       120       130       140       150       160     
pF1KE1 LGGDMVNQSFICDPDDETFIKNIIIQDCMWSGFSAAAKLVSEKLASYQAARKDSGSPNPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LGGDMVNQSFICDPDDETFIKNIIIQDCMWSGFSAAAKLVSEKLASYQAARKDSGSPNPA
              130       140       150       160       170       180

         170       180       190       200       210       220     
pF1KE1 RGHSVCSTSSLYLQDLSAAASECIDPSVVFPYPLNDSSSPKSCASQDSSAFSPSSDSLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 RGHSVCSTSSLYLQDLSAAASECIDPSVVFPYPLNDSSSPKSCASQDSSAFSPSSDSLLS
              190       200       210       220       230       240

         230       240       250       260       270       280     
pF1KE1 STESSPQGSPEPLVLHEETPPTTSSDSEEEQEDEEEIDVVSVEKRQAPGKRSESGSPSAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 STESSPQGSPEPLVLHEETPPTTSSDSEEEQEDEEEIDVVSVEKRQAPGKRSESGSPSAG
              250       260       270       280       290       300

         290       300       310       320       330       340     
pF1KE1 GHSKPPHSPLVLKRCHVSTHQHNYAAPPSTRKDYPAAKRVKLDSVRVLRQISNNRKCTSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 GHSKPPHSPLVLKRCHVSTHQHNYAAPPSTRKDYPAAKRVKLDSVRVLRQISNNRKCTSP
              310       320       330       340       350       360

         350       360       370       380       390       400     
pF1KE1 RSSDTEENVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 RSSDTEENVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILS
              370       380       390       400       410       420

         410       420       430         
pF1KE1 VQAEEQKLISEEDLLRKRREQLKHKLEQLRNSCA
       ::::::::::::::::::::::::::::::::::
CCDS63 VQAEEQKLISEEDLLRKRREQLKHKLEQLRNSCA
              430       440       450    

>>CCDS1687.1 MYCN gene_id:4613|Hs108|chr2                 (464 aa)
 initn: 791 init1: 360 opt: 468  Z-score: 359.8  bits: 75.8 E(32554): 1e-13
Smith-Waterman score: 872; 40.7% identity (62.1% similar) in 477 aa overlap (10-438:15-464)

                    10        20        30        40        50     
pF1KE1      MPLNVSFTNRNYDLDYDSVQPYFYCDEEENFYQQQQQSELQPPAPSEDIWKKFEL
                     .: ::..::.:: :: ::.. ::    .:    : :.:::::::::
CCDS16 MPSCSTSTMPGMICKNPDLEFDSLQPCFYPDEDD-FYFGGPDS---TP-PGEDIWKKFEL
               10        20        30         40            50     

          60        70           80        90       100       110  
pF1KE1 LPTPPLSPSRRSGLCS---PSYVAVTPFSLRGDNDGGGGSFSTADQLEMVTELLGGDMVN
       ::::::::::  .  :   ::.:  : . :  .:.  :   : :..  .    :::   :
CCDS16 LPTPPLSPSRGFAEHSSEPPSWV--TEMLL--ENELWG---SPAEEDAFGLGGLGGLTPN
          60        70          80             90       100        

            120       130       140                  150       160 
pF1KE1 QSFICDPDDETFIKNIIIQDCMWSGFSAAAKL---VSEKL--------ASYQAARKDSGS
             :        .:.::::::::::  ::   :::::        :.  :    .:.
CCDS16 ------P--------VILQDCMWSGFSAREKLERAVSEKLQHGRGPPTAGSTAQSPGAGA
                    110       120       130       140       150    

              170           180       190       200        210     
pF1KE1 PNPA-RGHSVCS----TSSLYLQDLSAAASECIDPSVVFPYPLNDSS-SPKSCASQDSSA
        .:: :::.  .    ...    .:.  :.::.::.::::.:.:    .:   :  .. :
CCDS16 ASPAGRGHGGAAGAGRAGAALPAELAHPAAECVDPAVVFPFPVNKREPAPVPAAPASAPA
          160       170       180       190       200       210    

           220       230                    240       250       260
pF1KE1 FSPS--SDSLLSSTESSPQ-GSPEP------------LVLHEETPPTTSSDSEEEQEDEE
        .:.  : . ...  ..:  . :.:            :    :   . :.: ..:.::::
CCDS16 AGPAVASGAGIAAPAGAPGVAPPRPGGRQTSGGDHKALSTSGEDTLSDSDDEDDEEEDEE
          220       230       240       250       260       270    

               270       280               290       300       310 
pF1KE1 E-IDVVSVEKRQAPGKRSESGS------P--SAGGHSKPPHSPLVLKRCHVSTHQHNYAA
       : ::::.::::.. .. .   .      :  .: : ..   : :.::::    .::::::
CCDS16 EEIDVVTVEKRRSSSNTKAVTTFTITVRPKNAALGPGRAQSSELILKRCLPIHQQHNYAA
          280       290       300       310       320       330    

               320        330       340        350       360       
pF1KE1 P-PSTR-KDYPAAKRVKLD-SVRVLRQISNNR-KCTSPRSSDTEENVKRRTHNVLERQRR
       : : .. .: :  :..: . : : :...   . :  :::.::.:.. .::.::.::::::
CCDS16 PSPYVESEDAPPQKKIKSEASPRPLKSVIPPKAKSLSPRNSDSEDSERRRNHNILERQRR
          340       350       360       370       380       390    

       370       380       390       400       410       420       
pF1KE1 NELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQL
       :.:. ::..:::..::: .:::: ::::::::: :. :.::::..:. :.. :. :..::
CCDS16 NDLRSSFLTLRDHVPELVKNEKAAKVVILKKATEYVHSLQAEEHQLLLEKEKLQARQQQL
          400       410       420       430       440       450    

       430         
pF1KE1 KHKLEQLRNSCA
        .:.:. : .: 
CCDS16 LKKIEHAR-TC 
          460      




439 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:02:25 2016 done: Sat Nov  5 19:02:26 2016
 Total Scan time:  3.850 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]