Result of FASTA (omim) for
pF1KE1083
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1083, 370 aa
1>>>pF1KE1083 370 - 370 aa - 370 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.6521+/-0.000497; mu= -7.9170+/- 0.031
mean_var=309.4715+/-62.092, 0's: 0 Z-trim(118.1): 39 B-trim: 31 in 1/54
Lambda= 0.072906
statistics sampled from 30651 (30688) to 30651 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.36), width: 16
Scan time: 9.370
The best scores are: opt bits E(85289)
NP_004984 (OMIM: 109150,607047) ataxin-3 reference ( 361) 2014 225.4 1.6e-58
NP_109376 (OMIM: 109150,607047) ataxin-3 isoform h ( 306) 1595 181.3 2.6e-45
NP_001121168 (OMIM: 109150,607047) ataxin-3 isofor ( 346) 1500 171.3 2.9e-42
NP_001158253 (OMIM: 109150,607047) ataxin-3 isofor ( 291) 1492 170.4 4.6e-42
NP_001129467 (OMIM: 300920) ataxin-3-like protein ( 355) 1475 168.7 1.8e-41
NP_001121169 (OMIM: 109150,607047) ataxin-3 isofor ( 310) 1144 133.8 5e-31
NP_001158251 (OMIM: 109150,607047) ataxin-3 isofor ( 240) 1140 133.3 5.5e-31
NP_001158250 (OMIM: 109150,607047) ataxin-3 isofor ( 154) 877 105.5 8.2e-23
NP_001158252 (OMIM: 109150,607047) ataxin-3 isofor ( 182) 805 98.0 1.8e-20
NP_001158248 (OMIM: 109150,607047) ataxin-3 isofor ( 103) 532 69.1 5.1e-12
NP_001158246 (OMIM: 109150,607047) ataxin-3 isofor ( 88) 421 57.4 1.5e-08
>>NP_004984 (OMIM: 109150,607047) ataxin-3 reference iso (361 aa)
initn: 2109 init1: 2012 opt: 2014 Z-score: 1171.7 bits: 225.4 E(85289): 1.6e-58
Smith-Waterman score: 2344; 97.6% identity (97.6% similar) in 370 aa overlap (1-370:1-361)
10 20 30 40 50 60
pF1KE1 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 FTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 IRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 DMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTNLTSEELRKRREAYFEKQQQKQQQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTNLTSEELRKRREAYFEKQQQKQQQQQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 QQQQQQQQQQQQQQGDLSGQSSHPCERPATSSGALGSDLGDAMSEEDMLQAAVTMSLETV
:: :::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QQ---------QQQGDLSGQSSHPCERPATSSGALGSDLGDAMSEEDMLQAAVTMSLETV
310 320 330 340 350
370
pF1KE1 RNDLKTEGKK
::::::::::
NP_004 RNDLKTEGKK
360
>>NP_109376 (OMIM: 109150,607047) ataxin-3 isoform h [Ho (306 aa)
initn: 1690 init1: 1593 opt: 1595 Z-score: 934.5 bits: 181.3 E(85289): 2.6e-45
Smith-Waterman score: 1925; 96.8% identity (97.1% similar) in 308 aa overlap (63-370:8-306)
40 50 60 70 80 90
pF1KE1 LSSIAHQLDEEERMRMAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELI
.:::::::::::::::::::::::::::::
NP_109 MESIFHEKQPSGNMDDSGFFSIQVISNALKVWGLELI
10 20 30
100 110 120 130 140 150
pF1KE1 LFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 LFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFL
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE1 AQLQQEGYSIFVVKGDLPDCEADQLLQMIRVQQMHRPKLIGEELAQLKEQRVHKTDLERV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 AQLQQEGYSIFVVKGDLPDCEADQLLQMIRVQQMHRPKLIGEELAQLKEQRVHKTDLERV
100 110 120 130 140 150
220 230 240 250 260 270
pF1KE1 LEANDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGSSRNISQDMTQTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 LEANDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGSSRNISQDMTQTS
160 170 180 190 200 210
280 290 300 310 320 330
pF1KE1 GTNLTSEELRKRREAYFEKQQQKQQQQQQQQQQQQQQQQQQQGDLSGQSSHPCERPATSS
::::::::::::::::::::::::::::::: ::::::::::::::::::::
NP_109 GTNLTSEELRKRREAYFEKQQQKQQQQQQQQ---------QQGDLSGQSSHPCERPATSS
220 230 240 250 260
340 350 360 370
pF1KE1 GALGSDLGDAMSEEDMLQAAVTMSLETVRNDLKTEGKK
::::::::::::::::::::::::::::::::::::::
NP_109 GALGSDLGDAMSEEDMLQAAVTMSLETVRNDLKTEGKK
270 280 290 300
>>NP_001121168 (OMIM: 109150,607047) ataxin-3 isoform ad (346 aa)
initn: 1591 init1: 1494 opt: 1500 Z-score: 879.7 bits: 171.3 E(85289): 2.9e-42
Smith-Waterman score: 2198; 93.5% identity (93.5% similar) in 370 aa overlap (1-370:1-346)
10 20 30 40 50 60
pF1KE1 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHW
::: ::::::::::::::::::::::::::::::::::::::::::
NP_001 FLQ---------------VISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHW
70 80 90 100
130 140 150 160 170 180
pF1KE1 FTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQM
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE1 IRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEI
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE1 DMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTNLTSEELRKRREAYFEKQQQKQQQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTNLTSEELRKRREAYFEKQQQKQQQQQ
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE1 QQQQQQQQQQQQQQGDLSGQSSHPCERPATSSGALGSDLGDAMSEEDMLQAAVTMSLETV
:: :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQ---------QQQGDLSGQSSHPCERPATSSGALGSDLGDAMSEEDMLQAAVTMSLETV
290 300 310 320 330
370
pF1KE1 RNDLKTEGKK
::::::::::
NP_001 RNDLKTEGKK
340
>>NP_001158253 (OMIM: 109150,607047) ataxin-3 isoform y (291 aa)
initn: 1584 init1: 1487 opt: 1492 Z-score: 876.2 bits: 170.4 E(85289): 4.6e-42
Smith-Waterman score: 1822; 95.9% identity (96.3% similar) in 296 aa overlap (75-370:5-291)
50 60 70 80 90 100
pF1KE1 RMRMAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRI
: .::::::::::::::::::::::::::
NP_001 MESIFHEKVISNALKVWGLELILFNSPEYQRLRI
10 20 30
110 120 130 140 150 160
pF1KE1 DPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFV
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE1 VKGDLPDCEADQLLQMIRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEANDGSGMLDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKGDLPDCEADQLLQMIRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEANDGSGMLDE
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE1 DEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTNLTSEELRKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTNLTSEELRKR
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE1 REAYFEKQQQKQQQQQQQQQQQQQQQQQQQGDLSGQSSHPCERPATSSGALGSDLGDAMS
::::::::::::::::::::: ::::::::::::::::::::::::::::::
NP_001 REAYFEKQQQKQQQQQQQQQQ---------GDLSGQSSHPCERPATSSGALGSDLGDAMS
220 230 240 250 260
350 360 370
pF1KE1 EEDMLQAAVTMSLETVRNDLKTEGKK
::::::::::::::::::::::::::
NP_001 EEDMLQAAVTMSLETVRNDLKTEGKK
270 280 290
>>NP_001129467 (OMIM: 300920) ataxin-3-like protein [Hom (355 aa)
initn: 1436 init1: 1311 opt: 1475 Z-score: 865.4 bits: 168.7 E(85289): 1.8e-41
Smith-Waterman score: 1594; 68.1% identity (83.8% similar) in 370 aa overlap (1-370:1-355)
10 20 30 40 50 60
pF1KE1 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
:. :::::::: :::::::::::::::::::::.::::::::::::::::::::::.: .
NP_001 MDFIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHW
:::::: ::::.::::::::::::: ::::.: ::.::::.: ::::::::::::::.::
NP_001 FLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 FTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQM
::.::.::.::::::::.:::::::: :: :::.:::..::.:::::::::::::::::.
NP_001 FTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLPDCEADQLLQI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 IRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEI
: :..: ::: :..:.. ::.::.:: ::.: : .: :: :.::::.:::: :::::
NP_001 ISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKVSEESDESGTSDQDEEDFQRALELSRQET
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 DMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTNLTSEELRKRREAYFEKQQQKQQQQQ
. :::. :: .:.::::::: : :::. .:: .. .::. .: .: ::::.::
NP_001 NREDEH--LRSTIELSMQGSSGNTSQDLPKTSCVTPASEQPKKIKEDYFEKHQQ------
250 260 270 280 290
310 320 330 340 350 360
pF1KE1 QQQQQQQQQQQQQQGDLSGQSSHPCERPATSSGALGSDLGDAMSEEDMLQAAVTMSLETV
.:.:::::.:: :.::. :::.::: :. :::.: .:: .:::: :: .
NP_001 ------EQKQQQQQSDLPGHSSYLHERPTTSSRAIESDLSDDISE-GTVQAAVDTILEIM
300 310 320 330 340
370
pF1KE1 RNDLKTEGKK
:..:: .:.:
NP_001 RKNLKIKGEK
350
>>NP_001121169 (OMIM: 109150,607047) ataxin-3 isoform e (310 aa)
initn: 1239 init1: 1142 opt: 1144 Z-score: 678.0 bits: 133.8 E(85289): 5e-31
Smith-Waterman score: 1882; 83.8% identity (83.8% similar) in 370 aa overlap (1-370:1-310)
10 20 30 40 50 60
pF1KE1 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHW
::::::::::::::::::
NP_001 FLQQPSGNMDDSGFFSIQ------------------------------------------
70
130 140 150 160 170 180
pF1KE1 FTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQM
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ---------WFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQM
80 90 100 110 120
190 200 210 220 230 240
pF1KE1 IRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEI
130 140 150 160 170 180
250 260 270 280 290 300
pF1KE1 DMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTNLTSEELRKRREAYFEKQQQKQQQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTNLTSEELRKRREAYFEKQQQKQQQQQ
190 200 210 220 230 240
310 320 330 340 350 360
pF1KE1 QQQQQQQQQQQQQQGDLSGQSSHPCERPATSSGALGSDLGDAMSEEDMLQAAVTMSLETV
:: :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQ---------QQQGDLSGQSSHPCERPATSSGALGSDLGDAMSEEDMLQAAVTMSLETV
250 260 270 280 290 300
370
pF1KE1 RNDLKTEGKK
::::::::::
NP_001 RNDLKTEGKK
310
>>NP_001158251 (OMIM: 109150,607047) ataxin-3 isoform r (240 aa)
initn: 1235 init1: 1138 opt: 1140 Z-score: 677.3 bits: 133.3 E(85289): 5.5e-31
Smith-Waterman score: 1470; 95.5% identity (96.3% similar) in 243 aa overlap (128-370:7-240)
100 110 120 130 140 150
pF1KE1 EYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQ
..::::::::::::::::::::::::::::
NP_001 MESIFHEKWFNLNSLLTGPELISDTYLALFLAQLQQ
10 20 30
160 170 180 190 200 210
pF1KE1 EGYSIFVVKGDLPDCEADQLLQMIRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEAND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGYSIFVVKGDLPDCEADQLLQMIRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEAND
40 50 60 70 80 90
220 230 240 250 260 270
pF1KE1 GSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTNLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTNLT
100 110 120 130 140 150
280 290 300 310 320 330
pF1KE1 SEELRKRREAYFEKQQQKQQQQQQQQQQQQQQQQQQQGDLSGQSSHPCERPATSSGALGS
::::::::::::::::::::::: ::::::::::::::::::::::::::::
NP_001 SEELRKRREAYFEKQQQKQQQQQ---------QQQQQGDLSGQSSHPCERPATSSGALGS
160 170 180 190 200
340 350 360 370
pF1KE1 DLGDAMSEEDMLQAAVTMSLETVRNDLKTEGKK
:::::::::::::::::::::::::::::::::
NP_001 DLGDAMSEEDMLQAAVTMSLETVRNDLKTEGKK
210 220 230 240
>>NP_001158250 (OMIM: 109150,607047) ataxin-3 isoform o (154 aa)
initn: 877 init1: 877 opt: 877 Z-score: 530.5 bits: 105.5 E(85289): 8.2e-23
Smith-Waterman score: 877; 100.0% identity (100.0% similar) in 129 aa overlap (1-129:1-129)
10 20 30 40 50 60
pF1KE1 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 FTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQM
:::::::::
NP_001 FTVRKLGKQTAAKAATAAAAAAAGGPIRTEFTSM
130 140 150
>>NP_001158252 (OMIM: 109150,607047) ataxin-3 isoform u (182 aa)
initn: 900 init1: 803 opt: 805 Z-score: 488.6 bits: 98.0 E(85289): 1.8e-20
Smith-Waterman score: 1135; 95.3% identity (95.3% similar) in 191 aa overlap (180-370:1-182)
150 160 170 180 190 200
pF1KE1 LFLAQLQQEGYSIFVVKGDLPDCEADQLLQMIRVQQMHRPKLIGEELAQLKEQRVHKTDL
::::::::::::::::::::::::::::::
NP_001 MIRVQQMHRPKLIGEELAQLKEQRVHKTDL
10 20 30
210 220 230 240 250 260
pF1KE1 ERVLEANDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGSSRNISQDMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERVLEANDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGSSRNISQDMT
40 50 60 70 80 90
270 280 290 300 310 320
pF1KE1 QTSGTNLTSEELRKRREAYFEKQQQKQQQQQQQQQQQQQQQQQQQGDLSGQSSHPCERPA
:::::::::::::::::::::::::::::::: :::::::::::::::::::
NP_001 QTSGTNLTSEELRKRREAYFEKQQQKQQQQQQ---------QQQQGDLSGQSSHPCERPA
100 110 120 130 140
330 340 350 360 370
pF1KE1 TSSGALGSDLGDAMSEEDMLQAAVTMSLETVRNDLKTEGKK
:::::::::::::::::::::::::::::::::::::::::
NP_001 TSSGALGSDLGDAMSEEDMLQAAVTMSLETVRNDLKTEGKK
150 160 170 180
>>NP_001158248 (OMIM: 109150,607047) ataxin-3 isoform g (103 aa)
initn: 532 init1: 532 opt: 532 Z-score: 336.8 bits: 69.1 E(85289): 5.1e-12
Smith-Waterman score: 532; 95.2% identity (98.8% similar) in 83 aa overlap (1-83:1-83)
10 20 30 40 50 60
pF1KE1 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHW
::::::::::::::::::. ..:
NP_001 FLQQPSGNMDDSGFFSIQTAAKAATAAAAAAAGGPIRTEFTSM
70 80 90 100
370 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 09:16:35 2016 done: Sat Nov 5 09:16:36 2016
Total Scan time: 9.370 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]