FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1084, 212 aa 1>>>pF1KE1084 212 - 212 aa - 212 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8510+/-0.000296; mu= 12.1078+/- 0.019 mean_var=76.3065+/-15.231, 0's: 0 Z-trim(119.1): 7 B-trim: 1290 in 1/53 Lambda= 0.146823 statistics sampled from 32832 (32839) to 32832 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.385), width: 16 Scan time: 6.690 The best scores are: opt bits E(85289) NP_000591 (OMIM: 108010,147620,148000,266600,60430 ( 212) 1364 297.4 1.2e-80 XP_011513692 (OMIM: 108010,147620,148000,266600,60 ( 212) 1364 297.4 1.2e-80 XP_005249802 (OMIM: 108010,147620,148000,266600,60 ( 252) 980 216.1 4.1e-56 NP_001305024 (OMIM: 108010,147620,148000,266600,60 ( 136) 865 191.6 5.2e-49 >>NP_000591 (OMIM: 108010,147620,148000,266600,604302) i (212 aa) initn: 1364 init1: 1364 opt: 1364 Z-score: 1569.2 bits: 297.4 E(85289): 1.2e-80 Smith-Waterman score: 1364; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212) 10 20 30 40 50 60 pF1KE1 MNSFSTSAFGPVAFSLGLLLVLPAAFPAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MNSFSTSAFGPVAFSLGLLLVLPAAFPAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 LDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 EFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 EFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQ 130 140 150 160 170 180 190 200 210 pF1KE1 AQNQWLQDMTTHLILRSFKEFLQSSLRALRQM :::::::::::::::::::::::::::::::: NP_000 AQNQWLQDMTTHLILRSFKEFLQSSLRALRQM 190 200 210 >>XP_011513692 (OMIM: 108010,147620,148000,266600,604302 (212 aa) initn: 1364 init1: 1364 opt: 1364 Z-score: 1569.2 bits: 297.4 E(85289): 1.2e-80 Smith-Waterman score: 1364; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212) 10 20 30 40 50 60 pF1KE1 MNSFSTSAFGPVAFSLGLLLVLPAAFPAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MNSFSTSAFGPVAFSLGLLLVLPAAFPAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 EFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQ 130 140 150 160 170 180 190 200 210 pF1KE1 AQNQWLQDMTTHLILRSFKEFLQSSLRALRQM :::::::::::::::::::::::::::::::: XP_011 AQNQWLQDMTTHLILRSFKEFLQSSLRALRQM 190 200 210 >>XP_005249802 (OMIM: 108010,147620,148000,266600,604302 (252 aa) initn: 980 init1: 980 opt: 980 Z-score: 1128.4 bits: 216.1 E(85289): 4.1e-56 Smith-Waterman score: 980; 99.3% identity (100.0% similar) in 152 aa overlap (6-157:60-211) 10 20 30 pF1KE1 MNSFSTSAFGPVAFSLGLLLVLPAAFPAPVPPGED :.:::::::::::::::::::::::::::: XP_005 VAQGGLAGGQQQRQAPSCAVSSPLRSLPSGTGAFGPVAFSLGLLLVLPAAFPAPVPPGED 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE1 SKDVAAPHRQPLTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SKDVAAPHRQPLTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKM 90 100 110 120 130 140 100 110 120 130 140 150 pF1KE1 AEKDGCFQSGFNEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AEKDGCFQSGFNEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQ 150 160 170 180 190 200 160 170 180 190 200 210 pF1KE1 KKAKNLDAITTPDPTTNASLLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM :: XP_005 KKVGVSSFPQLGVGEDRLKDSVLDNSGMQCHFQKRRLHVNKRV 210 220 230 240 250 >>NP_001305024 (OMIM: 108010,147620,148000,266600,604302 (136 aa) initn: 865 init1: 865 opt: 865 Z-score: 1000.9 bits: 191.6 E(85289): 5.2e-49 Smith-Waterman score: 865; 100.0% identity (100.0% similar) in 136 aa overlap (77-212:1-136) 50 60 70 80 90 100 pF1KE1 LTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGF :::::::::::::::::::::::::::::: NP_001 MCESSKEALAENNLNLPKMAEKDGCFQSGF 10 20 30 110 120 130 140 150 160 pF1KE1 NEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITT 40 50 60 70 80 90 170 180 190 200 210 pF1KE1 PDPTTNASLLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM :::::::::::::::::::::::::::::::::::::::::::::: NP_001 PDPTTNASLLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM 100 110 120 130 212 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 09:09:08 2016 done: Sat Nov 5 09:09:09 2016 Total Scan time: 6.690 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]