Result of FASTA (ccds) for
pF1KE1097
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1097, 606 aa
1>>>pF1KE1097 606 - 606 aa - 606 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.0941+/-0.00126; mu= 3.0001+/- 0.077
mean_var=489.1662+/-101.309, 0's: 0 Z-trim(114.3): 144 B-trim: 370 in 1/55
Lambda= 0.057989
statistics sampled from 14686 (14830) to 14686 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.456), width: 16
Scan time: 4.200
The best scores are: opt bits E(32554)
CCDS34871.1 SCARA3 gene_id:51435|Hs108|chr8 ( 606) 4097 357.5 2.8e-98
CCDS34870.1 SCARA3 gene_id:51435|Hs108|chr8 ( 466) 2948 261.3 2.1e-69
CCDS32782.1 COLEC12 gene_id:81035|Hs108|chr18 ( 742) 1250 119.5 1.6e-26
>>CCDS34871.1 SCARA3 gene_id:51435|Hs108|chr8 (606 aa)
initn: 4097 init1: 4097 opt: 4097 Z-score: 1877.9 bits: 357.5 E(32554): 2.8e-98
Smith-Waterman score: 4097; 100.0% identity (100.0% similar) in 606 aa overlap (1-606:1-606)
10 20 30 40 50 60
pF1KE1 MKVRSAGGDGDALCVTEEDLAGDDEDMPTFPCTQKGRPGPRCSRCQKNLSLHTSVRILYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MKVRSAGGDGDALCVTEEDLAGDDEDMPTFPCTQKGRPGPRCSRCQKNLSLHTSVRILYL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FLALLLVAVAVLASLVFRKVDSLSEDISLTQSIYDKKLVLMQKNLQGLDPKALNNCSFCH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FLALLLVAVAVLASLVFRKVDSLSEDISLTQSIYDKKLVLMQKNLQGLDPKALNNCSFCH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 EAGQLGPEIRKLQEELEGIQKLLLAQEVQLDQTLQAQEVLSTTSRQISQEMGSCSFSIHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EAGQLGPEIRKLQEELEGIQKLLLAQEVQLDQTLQAQEVLSTTSRQISQEMGSCSFSIHQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 VNQSLGLFLAQVRGWQATTAGLDLSLKDLTQECYDVKAAVHQINFTVGQTSEWIHGIQRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VNQSLGLFLAQVRGWQATTAGLDLSLKDLTQECYDVKAAVHQINFTVGQTSEWIHGIQRK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TDEETLTLQKIVTDWQNYTRLFSGLRTTSTKTGEAVKNIQATLGASSQRISQNSESMHDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TDEETLTLQKIVTDWQNYTRLFSGLRTTSTKTGEAVKNIQATLGASSQRISQNSESMHDL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 VLQVMGLQLQLDNISSFLDDHEENMHDLQYHTHYAQNRTVERFESLEGRMASHEIEIGTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VLQVMGLQLQLDNISSFLDDHEENMHDLQYHTHYAQNRTVERFESLEGRMASHEIEIGTI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 FTNINATDNHVHSMLKYLDDVRLSCTLGFHTHAEELYYLNKSVSIMLGTTDLLRERFSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FTNINATDNHVHSMLKYLDDVRLSCTLGFHTHAEELYYLNKSVSIMLGTTDLLRERFSLL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 SARLDLNVRNLSMIVEEMKAVDTQHGEILRNVTILRGAPGPPGPRGFKGDMGVKGPVGGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SARLDLNVRNLSMIVEEMKAVDTQHGEILRNVTILRGAPGPPGPRGFKGDMGVKGPVGGR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE1 GPKGDPGSLGPLGPQGPQGQPGEAGPVGERGPVGPRGFPGLKGSKGSFGTGGPRGQPGPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GPKGDPGSLGPLGPQGPQGQPGEAGPVGERGPVGPRGFPGLKGSKGSFGTGGPRGQPGPK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE1 GDIGPPGPEGPPGSPGPSGPQGKPGIAGKTGSPGQRGAMGPKGEPGIQGPPGLPGPPGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GDIGPPGPEGPPGSPGPSGPQGKPGIAGKTGSPGQRGAMGPKGEPGIQGPPGLPGPPGPP
550 560 570 580 590 600
pF1KE1 GSQSFY
::::::
CCDS34 GSQSFY
>>CCDS34870.1 SCARA3 gene_id:51435|Hs108|chr8 (466 aa)
initn: 2948 init1: 2948 opt: 2948 Z-score: 1359.6 bits: 261.3 E(32554): 2.1e-69
Smith-Waterman score: 2948; 100.0% identity (100.0% similar) in 457 aa overlap (1-457:1-457)
10 20 30 40 50 60
pF1KE1 MKVRSAGGDGDALCVTEEDLAGDDEDMPTFPCTQKGRPGPRCSRCQKNLSLHTSVRILYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MKVRSAGGDGDALCVTEEDLAGDDEDMPTFPCTQKGRPGPRCSRCQKNLSLHTSVRILYL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FLALLLVAVAVLASLVFRKVDSLSEDISLTQSIYDKKLVLMQKNLQGLDPKALNNCSFCH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FLALLLVAVAVLASLVFRKVDSLSEDISLTQSIYDKKLVLMQKNLQGLDPKALNNCSFCH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 EAGQLGPEIRKLQEELEGIQKLLLAQEVQLDQTLQAQEVLSTTSRQISQEMGSCSFSIHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EAGQLGPEIRKLQEELEGIQKLLLAQEVQLDQTLQAQEVLSTTSRQISQEMGSCSFSIHQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 VNQSLGLFLAQVRGWQATTAGLDLSLKDLTQECYDVKAAVHQINFTVGQTSEWIHGIQRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VNQSLGLFLAQVRGWQATTAGLDLSLKDLTQECYDVKAAVHQINFTVGQTSEWIHGIQRK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TDEETLTLQKIVTDWQNYTRLFSGLRTTSTKTGEAVKNIQATLGASSQRISQNSESMHDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TDEETLTLQKIVTDWQNYTRLFSGLRTTSTKTGEAVKNIQATLGASSQRISQNSESMHDL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 VLQVMGLQLQLDNISSFLDDHEENMHDLQYHTHYAQNRTVERFESLEGRMASHEIEIGTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VLQVMGLQLQLDNISSFLDDHEENMHDLQYHTHYAQNRTVERFESLEGRMASHEIEIGTI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 FTNINATDNHVHSMLKYLDDVRLSCTLGFHTHAEELYYLNKSVSIMLGTTDLLRERFSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FTNINATDNHVHSMLKYLDDVRLSCTLGFHTHAEELYYLNKSVSIMLGTTDLLRERFSLL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 SARLDLNVRNLSMIVEEMKAVDTQHGEILRNVTILRGAPGPPGPRGFKGDMGVKGPVGGR
:::::::::::::::::::::::::::::::::::::
CCDS34 SARLDLNVRNLSMIVEEMKAVDTQHGEILRNVTILRGHTLFSHNRI
430 440 450 460
490 500 510 520 530 540
pF1KE1 GPKGDPGSLGPLGPQGPQGQPGEAGPVGERGPVGPRGFPGLKGSKGSFGTGGPRGQPGPK
>>CCDS32782.1 COLEC12 gene_id:81035|Hs108|chr18 (742 aa)
initn: 1835 init1: 890 opt: 1250 Z-score: 589.8 bits: 119.5 E(32554): 1.6e-26
Smith-Waterman score: 1250; 35.0% identity (67.2% similar) in 588 aa overlap (17-601:2-581)
10 20 30 40 50
pF1KE1 MKVRSAGGDGDALCVTEEDLAGDDEDMPTFPCTQKG-RPGPRCSRCQKNLSLHTSVRILY
..:.: ..:.. .: . : . : .:..:..: .:. :. .::
CCDS32 MKDDFA-EEEEVQSFGYKRFGIQEGTQCTKCKNNWALKFSIILLY
10 20 30 40
60 70 80 90 100 110
pF1KE1 LFLALLLVAVAVLASLVFRKVDSLSEDISLTQSIYDKKLVLMQKNLQGL-DPKALNNCSF
.. ::: ..::.:. : .:.:... . ... :: ::. ....:. : : . . :
CCDS32 ILCALLTITVAILGYKVVEKMDNVTGGMETSRQTYDDKLTAVESDLKKLGDQTGKKAIST
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE1 CHEAGQLGPEIRKLQEELEGIQKLLLAQEVQLDQTLQAQEVLSTTSRQISQEMGSCSFSI
: . . .: :...:. : . .. :.. . ..: . :... . . :: :
CCDS32 NSELSTFRSDILDLRQQLREITEKTSKNKDTLEKLQASGDALVDRQSQLKETLENNSFLI
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE1 HQVNQSLGLFLAQVRGWQATTAGLDLSLKDLTQECYDVKAAVHQINFTVGQTSEWIHGIQ
::..: . . : . : :. :. .:.. : ....:.: : . : ..:
CCDS32 TTVNKTLQAYNGYVTNLQQDTSVLQGNLQNQMYSHNVVIMNLNNLNLTQVQQRNLITNLQ
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE1 RKTDEETLTLQKIVTDWQNYTRLFSGLRTTSTKTGEAVKNIQATLGASSQRISQ-NSESM
:..:. . ..:.: .:.:: ..: . . : :...: ::.:... ... :....
CCDS32 RSVDDTSQAIQRIKNDFQNLQQVFLQAKKDTDWLKEKVQSLQ-TLAANNSALAKANNDTL
230 240 250 260 270 280
300 310 320 330 340 350
pF1KE1 HDLVLQVMGLQLQLDNISSFLDDHEENMHDLQYHTHYAQNRTVERFESLEGRMASHEIEI
.:. :. .. :..::... . .:.:..::: . :.:::. .:..:: :. : .:
CCDS32 EDMNSQLNSFTGQMENITTISQANEQNLKDLQDLHKDAENRTAIKFNQLEERFQLFETDI
290 300 310 320 330 340
360 370 380 390 400 410
pF1KE1 GTIFTNINATDNHVHSMLKYLDDVRLSCTLGFHTHAEELYYLNKSVSIMLGTTDLLRERF
.:..::. : .:.... . :..:: .:: . :...: ::.... . . :: .
CCDS32 VNIISNISYTAHHLRTLTSNLNEVRTTCTDTLTKHTDDLTSLNNTLANIRLDSVSLRMQQ
350 360 370 380 390 400
420 430 440 450 460 470
pF1KE1 SLLSARLDLNVRNLSMIVEEMKAVDTQHGEILRNVTILRGAPGPPGPRGFKGDMGVKGPV
.:. .::: .: :::.:.:::: ::..::....: :::.: ::: :::: .:..: ::.
CCDS32 DLMRSRLDTEVANLSVIMEEMKLVDSKHGQLIKNFTILQGPPGPRGPRGDRGSQGPPGPT
410 420 430 440 450 460
480 490 500 510 520 530
pF1KE1 GGRGPKGDPGSLGPLGPQGPQGQPGEAGPVGERGPVGPRGFPGLKGSKGSFGTGGPRGQP
:..: ::. : :: :: : .: : ::: :::: : .: : :::.:: : :.:
CCDS32 GNKGQKGEKGEPGPPGPAGERGPIGPAGPPGERGGKGSKGSQGPKGSRGS-----P-GKP
470 480 490 500 510
540 550 560 570 580 590
pF1KE1 GPKGDIGPPGPEGPPGSPGPSGPQGKPGIAGKTGSPGQRGAMGPKGEPGIQGPPGLPGPP
::.:. : ::: ::::. : :::: ::. : :. :. :. ::.: ::. : ::.:::
CCDS32 GPQGSSGDPGPPGPPGKEGLPGPQGPPGFQGLQGTVGEPGVPGPRGLPGLPGVPGMPGPK
520 530 540 550 560 570
600
pF1KE1 GPPGSQSFY
::::
CCDS32 GPPGPPGPSGAVVPLALQNEPTPAPEDNGCPPHWKNFTDKCYYFSVEKEIFEDAKLFCED
580 590 600 610 620 630
606 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 19:11:45 2016 done: Sat Nov 5 19:11:46 2016
Total Scan time: 4.200 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]