Result of FASTA (ccds) for
pF1KE1136
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1136, 357 aa
1>>>pF1KE1136 357 - 357 aa - 357 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8515+/-0.00094; mu= 13.3608+/- 0.056
mean_var=73.0348+/-15.485, 0's: 0 Z-trim(105.2): 26 B-trim: 515 in 1/46
Lambda= 0.150075
statistics sampled from 8280 (8298) to 8280 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.63), E-opt: 0.2 (0.255), width: 16
Scan time: 2.590
The best scores are: opt bits E(32554)
CCDS8657.1 GPRC5A gene_id:9052|Hs108|chr12 ( 357) 2379 524.5 5.3e-149
CCDS8658.1 GPRC5D gene_id:55507|Hs108|chr12 ( 345) 957 216.6 2.5e-56
CCDS10581.1 GPRC5B gene_id:51704|Hs108|chr16 ( 403) 652 150.6 2.1e-36
CCDS42378.1 GPRC5C gene_id:55890|Hs108|chr17 ( 453) 478 113.0 5.2e-25
CCDS11699.1 GPRC5C gene_id:55890|Hs108|chr17 ( 486) 478 113.0 5.5e-25
>>CCDS8657.1 GPRC5A gene_id:9052|Hs108|chr12 (357 aa)
initn: 2379 init1: 2379 opt: 2379 Z-score: 2788.5 bits: 524.5 E(32554): 5.3e-149
Smith-Waterman score: 2379; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:1-357)
10 20 30 40 50 60
pF1KE1 MATTVPDGCRNGLKSKYYRLCDKAEAWGIVLETVATAGVVTSVAFMLTLPILVCKVQDSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 MATTVPDGCRNGLKSKYYRLCDKAEAWGIVLETVATAGVVTSVAFMLTLPILVCKVQDSN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RRKMLPTQFLFLLGVLGIFGLTFAFIIGLDGSTGPTRFFLFGILFSICFSCLLAHAVSLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 RRKMLPTQFLFLLGVLGIFGLTFAFIIGLDGSTGPTRFFLFGILFSICFSCLLAHAVSLT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 KLVRGRKPLSLLVILGLAVGFSLVQDVIAIEYIVLTMNRTNVNVFSELSAPRRNEDFVLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 KLVRGRKPLSLLVILGLAVGFSLVQDVIAIEYIVLTMNRTNVNVFSELSAPRRNEDFVLL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LTYVLFLMALTFLMSSFTFCGSFTGWKRHGAHIYLTMLLSIAIWVAWITLLMLPDFDRRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 LTYVLFLMALTFLMSSFTFCGSFTGWKRHGAHIYLTMLLSIAIWVAWITLLMLPDFDRRW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 DDTILSSALAANGWVFLLAYVSPEFWLLTKQRNPMDYPVEDAFCKPQLVKKSYGVENRAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 DDTILSSALAANGWVFLLAYVSPEFWLLTKQRNPMDYPVEDAFCKPQLVKKSYGVENRAY
250 260 270 280 290 300
310 320 330 340 350
pF1KE1 SQEEITQGFEETGDTLYAPYSTHFQLQNQPPQKEFSIPRAHAWPSPYKDYEVKKEGS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 SQEEITQGFEETGDTLYAPYSTHFQLQNQPPQKEFSIPRAHAWPSPYKDYEVKKEGS
310 320 330 340 350
>>CCDS8658.1 GPRC5D gene_id:55507|Hs108|chr12 (345 aa)
initn: 886 init1: 507 opt: 957 Z-score: 1124.8 bits: 216.6 E(32554): 2.5e-56
Smith-Waterman score: 957; 45.7% identity (74.2% similar) in 337 aa overlap (17-349:12-341)
10 20 30 40 50 60
pF1KE1 MATTVPDGCRNGLKSKYYRLCDKAEAWGIVLETVATAGVVTSVAFMLTLPILVCKVQDSN
:. ::: :::.::..: :.:... ..:.. .:. :.:: .
CCDS86 MYKDCIESTGDYFLLCDAEGPWGIILESLAILGIVVTILLLLAFLFLMRKIQDCS
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 RRKMLPTQFLFLLGVLGIFGLTFAFIIGLDGSTGPTRFFLFGILFSICFSCLLAHAVSLT
. ..::::.::::.:::.:::.::::: :. .:.:.:.::::.::..::::::::: .:.
CCDS86 QWNVLPTQLLFLLSVLGLFGLAFAFIIELNQQTAPVRYFLFGVLFALCFSCLLAHASNLV
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 KLVRGRKPLSLLVILGLAVGFSLVQDVIAIEYIVLTMNRTNVNVFSELSAPRRNEDFVLL
::::: .: .:: .:.: ::.: .:: ::..: :.: .: ... . : :::.:
CCDS86 KLVRGCVSFSWTTILCIAIGCSLLQIIIATEYVTLIMTRGM--MFVNMTPCQLNVDFVVL
120 130 140 150 160 170
190 200 210 220 230
pF1KE1 LTYVLFLMALTFLMSSFTFCGSFTGWKRHGAHIYLTMLLSIAIWVAWITLLML--PDFDR
:.::::::::::..:. :::: .::.:: :..:.:.:: :::.::..:. :.:.:
CCDS86 LVYVLFLMALTFFVSKATFCGPCENWKQHGRLIFITVLFSIIIWVVWISMLLRGNPQFQR
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE1 R--WDDTILSSALAANGWVFLLAYVSPEFWLLTKQRNPMDYPVEDAFCKPQLVKKSYGVE
. ::: .. ::..:.::::: :. ::. .: .. .. :.. : ..:. ::
CCDS86 QPQWDDPVVCIALVTNAWVFLLLYIVPELCILYRS-CRQECPLQGNACPVTAYQHSFQVE
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE1 NRAYSQEEITQGFEETGDTLYAPYSTHFQLQNQPPQKEFSIPRAHAWPSPYKDYEVKKEG
:. :. . ..: :: :. . :.: .: :. : .: ::.:. :: .:
CCDS86 NQELSRARDSDGAEE--DVALTSYGTPIQPQTVDPTQECFIPQAKL--SPQQDAGGV
300 310 320 330 340
pF1KE1 S
>>CCDS10581.1 GPRC5B gene_id:51704|Hs108|chr16 (403 aa)
initn: 586 init1: 404 opt: 652 Z-score: 766.9 bits: 150.6 E(32554): 2.1e-36
Smith-Waterman score: 670; 37.4% identity (66.4% similar) in 321 aa overlap (8-313:36-349)
10 20 30
pF1KE1 MATTVPDGCRNGLKSKYYRLCDKAEAWGIVLETVATA
:: : .: ::: ::::.:.:: :
CCDS10 ERKMRAHQVLTFLLLFVITSVASENASTSRGCGLDLLPQYVSLCDLDAIWGIVVEAVAGA
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 GVVTSVAFMLTLPILVCKVQDSNRRKMLPTQFLFLLGVLGIFGLTFAFIIGLDGSTGPTR
:.. .. .:: : . . ........ . .::::::.::.::::::::: : . .:
CCDS10 GALITLLLMLILLVRLPFIKEKEKKSPVGLHFLFLLGTLGLFGLTFAFIIQEDETICSVR
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE1 FFLFGILFSICFSCLLAHAVSLTKLVR-GRKPLSLLVILGLAVGFSLVQDVIAIEYIVLT
::.:.::..::::::..: . .::: : : . .. :::. . ::: .::.:..:::
CCDS10 RFLWGVLFALCFSCLLSQAWRVRRLVRHGTGPAGWQLV-GLALCLMLVQVIIAVEWLVLT
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE1 MNRTNVNVFSELSAPRRNEDFVLLLTYVLFLMALTFLMSSFTFCGSFTGWKRHGAHIYLT
. : .. . . :::. : : . :...:. .. ::.::.: :: .:: . .:
CCDS10 VLRD-----TRPACAYEPMDFVMALIYDMVLLVVTLGLALFTLCGKFKRWKLNGAFLLIT
190 200 210 220 230
220 230 240 250 260
pF1KE1 MLLSIAIWVAWITLLMLPDFDRR----WDDTILSSALAANGWVFLLAYVSPEF---WLLT
.::. :::::.:. .. . . :.: :. .:::.::::.. .. ::. : .
CCDS10 AFLSVLIWVAWMTMYLFGNVKLQQGDAWNDPTLAITLAASGWVFVIFHAIPEIHCTLLPA
240 250 260 270 280 290
270 280 290 300 310 320
pF1KE1 KQRNPMDY-----PV--EDAFCKPQLVKKSYGVENRAYSQEEITQGFEETGDTLYAPYST
:.: .: : : :: . . ..: .::.:.:..: . ... .:
CCDS10 LQENTPNYFDTSQPRMRETAFEEDVQLPRAY-MENKAFSMDEHNAALRTAGFPNGSLGKR
300 310 320 330 340 350
330 340 350
pF1KE1 HFQLQNQPPQKEFSIPRAHAWPSPYKDYEVKKEGS
CCDS10 PSGSLGKRPSAPFRSNVYQPTEMAVVLNGGTIPTAPPSHTGRHLW
360 370 380 390 400
>>CCDS42378.1 GPRC5C gene_id:55890|Hs108|chr17 (453 aa)
initn: 752 init1: 456 opt: 478 Z-score: 562.5 bits: 113.0 E(32554): 5.2e-25
Smith-Waterman score: 718; 38.5% identity (64.7% similar) in 374 aa overlap (5-342:39-408)
10 20 30
pF1KE1 MATTVPDGCRNGLKSKYYRLCDKAEAWGIVLETV
:: :: .::. :: :::.. :::::::.:
CCDS42 LGARMAIHKALVMCLGLPLFLFPGAWAQGHVPPGCSQGLNPLYYNLCDRSGAWGIVLEAV
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 ATAGVVTSVAFMLTLPILVCK---VQDSNRRKMLPTQFLFLLGVLGIFGLTFAFIIGLDG
: ::.::. :.::. ::: . :::...:..: :: .::::.::.: :.:: .. :
CCDS42 AGAGIVTT--FVLTI-ILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDF
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE1 STGPTRFFLFGILFSICFSCLLAHAVSLTKLVRGRKPLSLLVILGLAVGFSLVQDVIAIE
:: .: ::::.::.:::::: ::. .:. :.: . ::. .:. ..::. .: :
CCDS42 STCASRRFLFGVLFAICFSCLAAHVFALNFLARKNHGPRGWVIFTVALLLTLVEVIINTE
130 140 150 160 170 180
160 170 180 190 200
pF1KE1 YIVLTMNRT--------NVNVFSELSAPRR--NEDFVLLLTYVLFLMALTFLMSSFTFCG
....:. : : .. ...: : :::. : ::..:. .:: . ..::
CCDS42 WLIITLVRGSGEGGPQGNSSAGWAVASPCAIANMDFVMALIYVMLLLLGAFLGAWPALCG
190 200 210 220 230 240
210 220 230 240 250
pF1KE1 SFTGWKRHGAHIYLTMLLSIAIWVAWITLLMLPDFDRR---WDDTILSSALAANGWVFLL
. :..::. . :: :.::::.::.. . .. ::: :. :::::.:.:.:
CCDS42 RYKRWRKHGVFVLLTTATSVAIWVVWIVMYTYGNKQHNSPTWDDPTLAIALAANAWAFVL
250 260 270 280 290 300
260 270 280 290 300
pF1KE1 AYVSPEFWLLTK----QRNPMD-YPVE----DAFCKPQLVKKSYGVENRAYSQEE-----
:: :: .:: : : ::.. ... : : .:. :::.:.:..:
CCDS42 FYVIPEVSQVTKSSPEQSYQGDMYPTRGVGYETILKEQK-GQSMFVENKAFSMDEPVAAK
310 320 330 340 350 360
310 320 330 340 350
pF1KE1 --ITQGFEETGDTLYAPYS-THFQLQNQPPQK---EFSIPRAHAWPSPYKDYEVKKEGS
.. .:. : . :. :.. :... :.. .. .::: :
CCDS42 RPVSPYSGYNGQLLTSVYQPTEMALMHKVPSEGAYDIILPRATANSQVMGSANSTLRAED
370 380 390 400 410 420
CCDS42 MYSAQSHQAATPPKDGKNSQVFRNPYVWD
430 440 450
>>CCDS11699.1 GPRC5C gene_id:55890|Hs108|chr17 (486 aa)
initn: 752 init1: 456 opt: 478 Z-score: 562.0 bits: 113.0 E(32554): 5.5e-25
Smith-Waterman score: 718; 38.5% identity (64.7% similar) in 374 aa overlap (5-342:72-441)
10 20 30
pF1KE1 MATTVPDGCRNGLKSKYYRLCDKAEAWGIVLETV
:: :: .::. :: :::.. :::::::.:
CCDS11 LGARMAIHKALVMCLGLPLFLFPGAWAQGHVPPGCSQGLNPLYYNLCDRSGAWGIVLEAV
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE1 ATAGVVTSVAFMLTLPILVCK---VQDSNRRKMLPTQFLFLLGVLGIFGLTFAFIIGLDG
: ::.::. :.::. ::: . :::...:..: :: .::::.::.: :.:: .. :
CCDS11 AGAGIVTT--FVLTI-ILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDF
110 120 130 140 150
100 110 120 130 140 150
pF1KE1 STGPTRFFLFGILFSICFSCLLAHAVSLTKLVRGRKPLSLLVILGLAVGFSLVQDVIAIE
:: .: ::::.::.:::::: ::. .:. :.: . ::. .:. ..::. .: :
CCDS11 STCASRRFLFGVLFAICFSCLAAHVFALNFLARKNHGPRGWVIFTVALLLTLVEVIINTE
160 170 180 190 200 210
160 170 180 190 200
pF1KE1 YIVLTMNRT--------NVNVFSELSAPRR--NEDFVLLLTYVLFLMALTFLMSSFTFCG
....:. : : .. ...: : :::. : ::..:. .:: . ..::
CCDS11 WLIITLVRGSGEGGPQGNSSAGWAVASPCAIANMDFVMALIYVMLLLLGAFLGAWPALCG
220 230 240 250 260 270
210 220 230 240 250
pF1KE1 SFTGWKRHGAHIYLTMLLSIAIWVAWITLLMLPDFDRR---WDDTILSSALAANGWVFLL
. :..::. . :: :.::::.::.. . .. ::: :. :::::.:.:.:
CCDS11 RYKRWRKHGVFVLLTTATSVAIWVVWIVMYTYGNKQHNSPTWDDPTLAIALAANAWAFVL
280 290 300 310 320 330
260 270 280 290 300
pF1KE1 AYVSPEFWLLTK----QRNPMD-YPVE----DAFCKPQLVKKSYGVENRAYSQEE-----
:: :: .:: : : ::.. ... : : .:. :::.:.:..:
CCDS11 FYVIPEVSQVTKSSPEQSYQGDMYPTRGVGYETILKEQK-GQSMFVENKAFSMDEPVAAK
340 350 360 370 380 390
310 320 330 340 350
pF1KE1 --ITQGFEETGDTLYAPYS-THFQLQNQPPQK---EFSIPRAHAWPSPYKDYEVKKEGS
.. .:. : . :. :.. :... :.. .. .::: :
CCDS11 RPVSPYSGYNGQLLTSVYQPTEMALMHKVPSEGAYDIILPRATANSQVMGSANSTLRAED
400 410 420 430 440 450
CCDS11 MYSAQSHQAATPPKDGKNSQVFRNPYVWD
460 470 480
357 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 14:55:58 2016 done: Sun Nov 6 14:55:59 2016
Total Scan time: 2.590 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]