FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1394, 522 aa
  1>>>pF1KE1394 522 - 522 aa - 522 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5947+/-0.000955; mu= 14.5765+/- 0.058
 mean_var=147.0448+/-29.210, 0's: 0 Z-trim(110.3): 30  B-trim: 27 in 1/51
 Lambda= 0.105767
 statistics sampled from 11501 (11521) to 11501 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.354), width:  16
 Scan time:  3.560

The best scores are:                                      opt bits E(32554)
CCDS4006.1 OCLN gene_id:100506658|Hs108|chr5       ( 522) 3526 549.9 2.6e-156
CCDS54864.1 OCLN gene_id:100506658|Hs108|chr5      ( 271) 1822 289.6 3.1e-78


>>CCDS4006.1 OCLN gene_id:100506658|Hs108|chr5            (522 aa)
 initn: 3526 init1: 3526 opt: 3526  Z-score: 2919.8  bits: 549.9 E(32554): 2.6e-156
Smith-Waterman score: 3526; 99.8% identity (99.8% similar) in 522 aa overlap (1-522:1-522)

               10        20        30        40        50        60
pF1KE1 MSSRPLESPPPYRPDEFKPNHYAPSNDIYGGEMHVRPMLSQPAYSFYPEDEILHFYKWTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MSSRPLESPPPYRPDEFKPNHYAPSNDIYGGEMHVRPMLSQPAYSFYPEDEILHFYKWTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PPGVIRILSMLIIVMCIAIFACVASTLAWDRGYGTSLLGGSVGYPYGGSGFGSYGSGYGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 PPGVIRILSMLIIVMCIAIFACVASTLAWDRGYGTSLLGGSVGYPYGGSGFGSYGSGYGY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GYGYGYGYGGYTDPRAAKGFMLAMAAFCFIAALVIFVTSVIRSEMSRTRRYYLSVIIVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 GYGYGYGYGGYTDPRAAKGFMLAMAAFCFIAALVIFVTSVIRSEMSRTRRYYLSVIIVSA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 ILGIMVFIATIVYIMGVNPTAQSSGSLYGSQIYALCNQFYTPAATGLYVDQYSYHYCVVD
       :::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
CCDS40 ILGIMVFIATIVYIMGVNPTAQSSGSLYGSQIYALCNQFYTPAATGLYVDQYLYHYCVVD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PQEAIAIVLGFMIIVAFALIIFFAVKTRRKMDRYDKSNILWDKEHIYDEQPPNVEEWVKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 PQEAIAIVLGFMIIVAFALIIFFAVKTRRKMDRYDKSNILWDKEHIYDEQPPNVEEWVKN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 VSAGTQDVPSPPSDYVERVDSPMAYSSNGKVNDKRFYPESSYKSTPVPEVVQELPLTSPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 VSAGTQDVPSPPSDYVERVDSPMAYSSNGKVNDKRFYPESSYKSTPVPEVVQELPLTSPV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 DDFRQPRYSSGGNFETPSKRAPAKGRAGRSKRTEQDHYETDYTTGGESCDELEEDWIREY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 DDFRQPRYSSGGNFETPSKRAPAKGRAGRSKRTEQDHYETDYTTGGESCDELEEDWIREY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 PPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYREESEEYMAAADE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 PPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYREESEEYMAAADE
              430       440       450       460       470       480

              490       500       510       520  
pF1KE1 YNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDRQKT
       ::::::::::::::::::::::::::::::::::::::::::
CCDS40 YNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDRQKT
              490       500       510       520  

>>CCDS54864.1 OCLN gene_id:100506658|Hs108|chr5           (271 aa)
 initn: 1822 init1: 1822 opt: 1822  Z-score: 1518.1  bits: 289.6 E(32554): 3.1e-78
Smith-Waterman score: 1822; 100.0% identity (100.0% similar) in 271 aa overlap (252-522:1-271)

             230       240       250       260       270       280 
pF1KE1 PAATGLYVDQYSYHYCVVDPQEAIAIVLGFMIIVAFALIIFFAVKTRRKMDRYDKSNILW
                                     ::::::::::::::::::::::::::::::
CCDS54                               MIIVAFALIIFFAVKTRRKMDRYDKSNILW
                                             10        20        30

             290       300       310       320       330       340 
pF1KE1 DKEHIYDEQPPNVEEWVKNVSAGTQDVPSPPSDYVERVDSPMAYSSNGKVNDKRFYPESS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DKEHIYDEQPPNVEEWVKNVSAGTQDVPSPPSDYVERVDSPMAYSSNGKVNDKRFYPESS
               40        50        60        70        80        90

             350       360       370       380       390       400 
pF1KE1 YKSTPVPEVVQELPLTSPVDDFRQPRYSSGGNFETPSKRAPAKGRAGRSKRTEQDHYETD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YKSTPVPEVVQELPLTSPVDDFRQPRYSSGGNFETPSKRAPAKGRAGRSKRTEQDHYETD
              100       110       120       130       140       150

             410       420       430       440       450       460 
pF1KE1 YTTGGESCDELEEDWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YTTGGESCDELEEDWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLD
              160       170       180       190       200       210

             470       480       490       500       510       520 
pF1KE1 KELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDRQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDRQK
              220       230       240       250       260       270

        
pF1KE1 T
       :
CCDS54 T
        




522 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:22:48 2016 done: Sat Nov  5 19:22:49 2016
 Total Scan time:  3.560 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]