FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1596, 354 aa 1>>>pF1KE1596 354 - 354 aa - 354 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.0297+/-0.00092; mu= -3.3145+/- 0.056 mean_var=248.1513+/-50.887, 0's: 0 Z-trim(114.8): 18 B-trim: 279 in 1/52 Lambda= 0.081417 statistics sampled from 15357 (15373) to 15357 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.472), width: 16 Scan time: 3.290 The best scores are: opt bits E(32554) CCDS11114.1 CD68 gene_id:968|Hs108|chr17 ( 354) 2345 287.8 9.6e-78 CCDS58512.1 CD68 gene_id:968|Hs108|chr17 ( 327) 2072 255.7 4.1e-68 >>CCDS11114.1 CD68 gene_id:968|Hs108|chr17 (354 aa) initn: 2345 init1: 2345 opt: 2345 Z-score: 1509.2 bits: 287.8 E(32554): 9.6e-78 Smith-Waterman score: 2345; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354) 10 20 30 40 50 60 pF1KE1 MRLAVLFSGALLGLLAAQGTGNDCPHKKSATLLPSFTVTPTVTESTGTTSHRTTKSHKTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MRLAVLFSGALLGLLAAQGTGNDCPHKKSATLLPSFTVTPTVTESTGTTSHRTTKSHKTT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 THRTTTTGTTSHGPTTATHNPTTTSHGNVTVHPTSNSTATSQGPSTATHSPATTSHGNAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 THRTTTTGTTSHGPTTATHNPTTTSHGNVTVHPTSNSTATSQGPSTATHSPATTSHGNAT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VHPTSNSTATSPGFTSSAHPEPPPPSPSPSPTSKETIGDYTWTNGSQPCVHLQAQIQIRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VHPTSNSTATSPGFTSSAHPEPPPPSPSPSPTSKETIGDYTWTNGSQPCVHLQAQIQIRV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 MYTTQGGGEAWGISVLNPNKTKVQGSCEGAHPHLLLSFPYGHLSFGFMQDLQQKVVYLSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MYTTQGGGEAWGISVLNPNKTKVQGSCEGAHPHLLLSFPYGHLSFGFMQDLQQKVVYLSY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 MAVEYNVSFPHAAQWTFSAQNASLRDLQAPLGQSFSCSNSSIILSPAVHLDLLSLRLQAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MAVEYNVSFPHAAQWTFSAQNASLRDLQAPLGQSFSCSNSSIILSPAVHLDLLSLRLQAA 250 260 270 280 290 300 310 320 330 340 350 pF1KE1 QLPHTGVFGQSFSCPSDRSILLPLIIGLILLGLLALVLIAFCIIRRRPSAYQAL :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 QLPHTGVFGQSFSCPSDRSILLPLIIGLILLGLLALVLIAFCIIRRRPSAYQAL 310 320 330 340 350 >>CCDS58512.1 CD68 gene_id:968|Hs108|chr17 (327 aa) initn: 2072 init1: 2072 opt: 2072 Z-score: 1336.4 bits: 255.7 E(32554): 4.1e-68 Smith-Waterman score: 2100; 92.4% identity (92.4% similar) in 354 aa overlap (1-354:1-327) 10 20 30 40 50 60 pF1KE1 MRLAVLFSGALLGLLAAQGTGNDCPHKKSATLLPSFTVTPTVTESTGTTSHRTTKSHKTT :::::::::::::::: ::::::::::::::::: CCDS58 MRLAVLFSGALLGLLA---------------------------ESTGTTSHRTTKSHKTT 10 20 30 70 80 90 100 110 120 pF1KE1 THRTTTTGTTSHGPTTATHNPTTTSHGNVTVHPTSNSTATSQGPSTATHSPATTSHGNAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 THRTTTTGTTSHGPTTATHNPTTTSHGNVTVHPTSNSTATSQGPSTATHSPATTSHGNAT 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE1 VHPTSNSTATSPGFTSSAHPEPPPPSPSPSPTSKETIGDYTWTNGSQPCVHLQAQIQIRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 VHPTSNSTATSPGFTSSAHPEPPPPSPSPSPTSKETIGDYTWTNGSQPCVHLQAQIQIRV 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE1 MYTTQGGGEAWGISVLNPNKTKVQGSCEGAHPHLLLSFPYGHLSFGFMQDLQQKVVYLSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 MYTTQGGGEAWGISVLNPNKTKVQGSCEGAHPHLLLSFPYGHLSFGFMQDLQQKVVYLSY 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE1 MAVEYNVSFPHAAQWTFSAQNASLRDLQAPLGQSFSCSNSSIILSPAVHLDLLSLRLQAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 MAVEYNVSFPHAAQWTFSAQNASLRDLQAPLGQSFSCSNSSIILSPAVHLDLLSLRLQAA 220 230 240 250 260 270 310 320 330 340 350 pF1KE1 QLPHTGVFGQSFSCPSDRSILLPLIIGLILLGLLALVLIAFCIIRRRPSAYQAL :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 QLPHTGVFGQSFSCPSDRSILLPLIIGLILLGLLALVLIAFCIIRRRPSAYQAL 280 290 300 310 320 354 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 19:22:11 2016 done: Sat Nov 5 19:22:12 2016 Total Scan time: 3.290 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]