Result of FASTA (ccds) for
pF1KE1617
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1617, 127 aa
1>>>pF1KE1617 127 - 127 aa - 127 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3504+/-0.000819; mu= 10.9121+/- 0.050
mean_var=64.0622+/-12.763, 0's: 0 Z-trim(106.4): 28 B-trim: 230 in 1/51
Lambda= 0.160241
statistics sampled from 9050 (9073) to 9050 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.271), width: 16
Scan time: 0.830
The best scores are: opt bits E(33420)
CCDS4563.1 H2BC1 gene_id:255626|Hs109|chr6 ( 127) 771 186.4 4.1e-48
CCDS4625.1 H2BC13 gene_id:8340|Hs109|chr6 ( 126) 673 163.8 2.7e-41
CCDS4633.1 H2BC15 gene_id:8341|Hs109|chr6 ( 126) 670 163.1 4.4e-41
CCDS4575.1 H2BC3 gene_id:3018|Hs109|chr6 ( 126) 670 163.1 4.4e-41
CCDS936.1 H2BC21 gene_id:8349|Hs109|chr1 ( 126) 667 162.4 7.1e-41
CCDS1574.1 H2BU1 gene_id:128312|Hs109|chr1 ( 126) 667 162.4 7.1e-41
CCDS4587.1 H2BC5 gene_id:3017|Hs109|chr6 ( 126) 667 162.4 7.1e-41
CCDS4592.1 H2BC7 gene_id:8343|Hs109|chr6 ( 126) 666 162.1 8.3e-41
CCDS4588.1 H2BC6 gene_id:8344|Hs109|chr6 ( 126) 666 162.1 8.3e-41
CCDS4594.1 H2BC8 gene_id:8339|Hs109|chr6 ( 126) 666 162.1 8.3e-41
CCDS4603.1 H2BC10 gene_id:8346|Hs109|chr6 ( 126) 666 162.1 8.3e-41
CCDS4584.1 H2BC4 gene_id:8347|Hs109|chr6 ( 126) 666 162.1 8.3e-41
CCDS4629.1 H2BC14 gene_id:8342|Hs109|chr6 ( 126) 664 161.7 1.1e-40
CCDS4640.1 H2BC17 gene_id:8348|Hs109|chr6 ( 126) 663 161.4 1.3e-40
CCDS4618.1 H2BC11 gene_id:8970|Hs109|chr6 ( 126) 663 161.4 1.3e-40
CCDS4601.1 H2BC9 gene_id:8345|Hs109|chr6 ( 126) 662 161.2 1.6e-40
CCDS30846.1 H2BC18 gene_id:440689|Hs109|chr1 ( 126) 662 161.2 1.6e-40
CCDS4621.1 H2BC12 gene_id:85236|Hs109|chr6 ( 126) 662 161.2 1.6e-40
CCDS53359.1 H2BC18 gene_id:440689|Hs109|chr1 ( 134) 662 161.2 1.7e-40
CCDS55468.1 H2BW2 gene_id:286436|Hs109|chrX ( 154) 319 82.0 1.4e-16
CCDS35362.1 H2BW1 gene_id:158983|Hs109|chrX ( 175) 299 77.4 3.8e-15
>>CCDS4563.1 H2BC1 gene_id:255626|Hs109|chr6 (127 aa)
initn: 771 init1: 771 opt: 771 Z-score: 977.4 bits: 186.4 E(33420): 4.1e-48
Smith-Waterman score: 771; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)
10 20 30 40 50 60
pF1KE1 MPEVSSKGATISKKGFKKAVVKTQKKEGKKRKRTRKESYSIYIYKVLKQVHPDTGISSKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MPEVSSKGATISKKGFKKAVVKTQKKEGKKRKRTRKESYSIYIYKVLKQVHPDTGISSKA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 MSIMNSFVTDIFERIASEASRLAHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSIMNSFVTDIFERIASEASRLAHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAV
70 80 90 100 110 120
pF1KE1 TKYTSSK
:::::::
CCDS45 TKYTSSK
>>CCDS4625.1 H2BC13 gene_id:8340|Hs109|chr6 (126 aa)
initn: 661 init1: 661 opt: 673 Z-score: 855.0 bits: 163.8 E(33420): 2.7e-41
Smith-Waterman score: 673; 85.8% identity (96.1% similar) in 127 aa overlap (1-127:1-126)
10 20 30 40 50 60
pF1KE1 MPEVSSKGATISKKGFKKAVVKTQKKEGKKRKRTRKESYSIYIYKVLKQVHPDTGISSKA
:::.. :.: ::: ::::.:.:::.::::::.::::::.:.:::::::::::::::::
CCDS46 MPELA-KSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKA
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 MSIMNSFVTDIFERIASEASRLAHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAV
:.::::::.::::::::::::::::.:::::.::::::::::::::::::::::::::::
CCDS46 MGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
60 70 80 90 100 110
pF1KE1 TKYTSSK
:::::::
CCDS46 TKYTSSK
120
>>CCDS4633.1 H2BC15 gene_id:8341|Hs109|chr6 (126 aa)
initn: 660 init1: 660 opt: 670 Z-score: 851.3 bits: 163.1 E(33420): 4.4e-41
Smith-Waterman score: 670; 85.8% identity (95.3% similar) in 127 aa overlap (1-127:1-126)
10 20 30 40 50 60
pF1KE1 MPEVSSKGATISKKGFKKAVVKTQKKEGKKRKRTRKESYSIYIYKVLKQVHPDTGISSKA
::: ::.: ::: ::::.:.:::.::::::.::::::.:.:::::::::::::::::
CCDS46 MPE-PSKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKA
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 MSIMNSFVTDIFERIASEASRLAHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAV
:.::::::.:::::::.::::::::.:::::.::::::::::::::::::::::::::::
CCDS46 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
60 70 80 90 100 110
pF1KE1 TKYTSSK
:::::::
CCDS46 TKYTSSK
120
>>CCDS4575.1 H2BC3 gene_id:3018|Hs109|chr6 (126 aa)
initn: 660 init1: 660 opt: 670 Z-score: 851.3 bits: 163.1 E(33420): 4.4e-41
Smith-Waterman score: 670; 85.8% identity (95.3% similar) in 127 aa overlap (1-127:1-126)
10 20 30 40 50 60
pF1KE1 MPEVSSKGATISKKGFKKAVVKTQKKEGKKRKRTRKESYSIYIYKVLKQVHPDTGISSKA
::: ::.: ::: :::..:.:::.::::::.::::::::.:::::::::::::::::
CCDS45 MPE-PSKSAPAPKKGSKKAITKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKA
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 MSIMNSFVTDIFERIASEASRLAHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAV
:.::::::.:::::::.::::::::.:::::.::::::::::::::::::::::::::::
CCDS45 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
60 70 80 90 100 110
pF1KE1 TKYTSSK
:::::::
CCDS45 TKYTSSK
120
>>CCDS936.1 H2BC21 gene_id:8349|Hs109|chr1 (126 aa)
initn: 657 init1: 657 opt: 667 Z-score: 847.5 bits: 162.4 E(33420): 7.1e-41
Smith-Waterman score: 667; 85.8% identity (95.3% similar) in 127 aa overlap (1-127:1-126)
10 20 30 40 50 60
pF1KE1 MPEVSSKGATISKKGFKKAVVKTQKKEGKKRKRTRKESYSIYIYKVLKQVHPDTGISSKA
::: .:.: ::: ::::.:.:::.::::::.::::::::.:::::::::::::::::
CCDS93 MPE-PAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKA
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 MSIMNSFVTDIFERIASEASRLAHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAV
:.::::::.:::::::.::::::::.:::::.::::::::::::::::::::::::::::
CCDS93 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
60 70 80 90 100 110
pF1KE1 TKYTSSK
:::::::
CCDS93 TKYTSSK
120
>>CCDS1574.1 H2BU1 gene_id:128312|Hs109|chr1 (126 aa)
initn: 661 init1: 661 opt: 667 Z-score: 847.5 bits: 162.4 E(33420): 7.1e-41
Smith-Waterman score: 667; 85.8% identity (94.5% similar) in 127 aa overlap (1-127:1-126)
10 20 30 40 50 60
pF1KE1 MPEVSSKGATISKKGFKKAVVKTQKKEGKKRKRTRKESYSIYIYKVLKQVHPDTGISSKA
::. ::.: ::: ::::.:.:::.:::::: ::::::::.:::::::::::::::::
CCDS15 MPD-PSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKA
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 MSIMNSFVTDIFERIASEASRLAHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAV
:.::::::.::::::::::::::::.:::::.:::.::::::::::::::::::::::::
CCDS15 MGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAV
60 70 80 90 100 110
pF1KE1 TKYTSSK
:::::::
CCDS15 TKYTSSK
120
>>CCDS4587.1 H2BC5 gene_id:3017|Hs109|chr6 (126 aa)
initn: 657 init1: 657 opt: 667 Z-score: 847.5 bits: 162.4 E(33420): 7.1e-41
Smith-Waterman score: 667; 85.0% identity (95.3% similar) in 127 aa overlap (1-127:1-126)
10 20 30 40 50 60
pF1KE1 MPEVSSKGATISKKGFKKAVVKTQKKEGKKRKRTRKESYSIYIYKVLKQVHPDTGISSKA
::: .:.: ::: ::::.:.:::.::::::.::::::.:.:::::::::::::::::
CCDS45 MPE-PTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKA
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 MSIMNSFVTDIFERIASEASRLAHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAV
:.::::::.:::::::.::::::::.:::::.::::::::::::::::::::::::::::
CCDS45 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
60 70 80 90 100 110
pF1KE1 TKYTSSK
:::::::
CCDS45 TKYTSSK
120
>>CCDS4592.1 H2BC7 gene_id:8343|Hs109|chr6 (126 aa)
initn: 656 init1: 656 opt: 666 Z-score: 846.3 bits: 162.1 E(33420): 8.3e-41
Smith-Waterman score: 666; 85.0% identity (95.3% similar) in 127 aa overlap (1-127:1-126)
10 20 30 40 50 60
pF1KE1 MPEVSSKGATISKKGFKKAVVKTQKKEGKKRKRTRKESYSIYIYKVLKQVHPDTGISSKA
::: .:.: ::: ::::.:.:::.::::::.::::::.:.:::::::::::::::::
CCDS45 MPE-PAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKA
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 MSIMNSFVTDIFERIASEASRLAHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAV
:.::::::.:::::::.::::::::.:::::.::::::::::::::::::::::::::::
CCDS45 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
60 70 80 90 100 110
pF1KE1 TKYTSSK
:::::::
CCDS45 TKYTSSK
120
>>CCDS4588.1 H2BC6 gene_id:8344|Hs109|chr6 (126 aa)
initn: 656 init1: 656 opt: 666 Z-score: 846.3 bits: 162.1 E(33420): 8.3e-41
Smith-Waterman score: 666; 85.0% identity (95.3% similar) in 127 aa overlap (1-127:1-126)
10 20 30 40 50 60
pF1KE1 MPEVSSKGATISKKGFKKAVVKTQKKEGKKRKRTRKESYSIYIYKVLKQVHPDTGISSKA
::: .:.: ::: ::::.:.:::.::::::.::::::.:.:::::::::::::::::
CCDS45 MPE-PAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKA
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 MSIMNSFVTDIFERIASEASRLAHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAV
:.::::::.:::::::.::::::::.:::::.::::::::::::::::::::::::::::
CCDS45 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
60 70 80 90 100 110
pF1KE1 TKYTSSK
:::::::
CCDS45 TKYTSSK
120
>>CCDS4594.1 H2BC8 gene_id:8339|Hs109|chr6 (126 aa)
initn: 656 init1: 656 opt: 666 Z-score: 846.3 bits: 162.1 E(33420): 8.3e-41
Smith-Waterman score: 666; 85.0% identity (95.3% similar) in 127 aa overlap (1-127:1-126)
10 20 30 40 50 60
pF1KE1 MPEVSSKGATISKKGFKKAVVKTQKKEGKKRKRTRKESYSIYIYKVLKQVHPDTGISSKA
::: .:.: ::: ::::.:.:::.::::::.::::::.:.:::::::::::::::::
CCDS45 MPE-PAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKA
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 MSIMNSFVTDIFERIASEASRLAHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAV
:.::::::.:::::::.::::::::.:::::.::::::::::::::::::::::::::::
CCDS45 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
60 70 80 90 100 110
pF1KE1 TKYTSSK
:::::::
CCDS45 TKYTSSK
120
127 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Oct 24 21:40:12 2019 done: Thu Oct 24 21:40:12 2019
Total Scan time: 0.830 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]