FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1689, 199 aa
  1>>>pF1KE1689 199 - 199 aa - 199 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3302+/-0.0006; mu= 7.4267+/- 0.037
 mean_var=148.5204+/-29.711, 0's: 0 Z-trim(118.1): 2  B-trim: 28 in 1/52
 Lambda= 0.105240
 statistics sampled from 18976 (18978) to 18976 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.851), E-opt: 0.2 (0.583), width:  16
 Scan time:  2.650

The best scores are:                                      opt bits E(32554)
CCDS12923.1 IL11 gene_id:3589|Hs108|chr19          ( 199) 1338 213.0 9.7e-56
CCDS59423.1 IL11 gene_id:3589|Hs108|chr19          ( 120)  797 130.7 3.5e-31


>>CCDS12923.1 IL11 gene_id:3589|Hs108|chr19               (199 aa)
 initn: 1338 init1: 1338 opt: 1338  Z-score: 1114.2  bits: 213.0 E(32554): 9.7e-56
Smith-Waterman score: 1338; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KE1 MNCVCRLVLVVLSLWPDTAVAPGPPPGPPRVSPDPRAELDSTVLLTRSLLADTRQLAAQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MNCVCRLVLVVLSLWPDTAVAPGPPPGPPRVSPDPRAELDSTVLLTRSLLADTRQLAAQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RDKFPADGDHNLDSLPTLAMSAGALGALQLPGVLTRLRADLLSYLRHVQWLRRAGGSSLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RDKFPADGDHNLDSLPTLAMSAGALGALQLPGVLTRLRADLLSYLRHVQWLRRAGGSSLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 TLEPELGTLQARLDRLLRRLQLLMSRLALPQPPPDPPAPPLAPPSSAWGGIRAAHAILGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TLEPELGTLQARLDRLLRRLQLLMSRLALPQPPPDPPAPPLAPPSSAWGGIRAAHAILGG
              130       140       150       160       170       180

              190         
pF1KE1 LHLTLDWAVRGLLLLKTRL
       :::::::::::::::::::
CCDS12 LHLTLDWAVRGLLLLKTRL
              190         

>>CCDS59423.1 IL11 gene_id:3589|Hs108|chr19               (120 aa)
 initn: 797 init1: 797 opt: 797  Z-score: 673.3  bits: 130.7 E(32554): 3.5e-31
Smith-Waterman score: 797; 100.0% identity (100.0% similar) in 120 aa overlap (80-199:1-120)

      50        60        70        80        90       100         
pF1KE1 LADTRQLAAQLRDKFPADGDHNLDSLPTLAMSAGALGALQLPGVLTRLRADLLSYLRHVQ
                                     ::::::::::::::::::::::::::::::
CCDS59                               MSAGALGALQLPGVLTRLRADLLSYLRHVQ
                                             10        20        30

     110       120       130       140       150       160         
pF1KE1 WLRRAGGSSLKTLEPELGTLQARLDRLLRRLQLLMSRLALPQPPPDPPAPPLAPPSSAWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WLRRAGGSSLKTLEPELGTLQARLDRLLRRLQLLMSRLALPQPPPDPPAPPLAPPSSAWG
               40        50        60        70        80        90

     170       180       190         
pF1KE1 GIRAAHAILGGLHLTLDWAVRGLLLLKTRL
       ::::::::::::::::::::::::::::::
CCDS59 GIRAAHAILGGLHLTLDWAVRGLLLLKTRL
              100       110       120




199 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:49:04 2016 done: Mon Nov  7 04:49:04 2016
 Total Scan time:  2.650 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]