FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1689, 199 aa
  1>>>pF1KE1689 199 - 199 aa - 199 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3840+/-0.000256; mu= 6.8077+/- 0.016
 mean_var=151.3059+/-30.863, 0's: 0 Z-trim(125.8): 2  B-trim: 1629 in 1/60
 Lambda= 0.104267
 statistics sampled from 50372 (50374) to 50372 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.853), E-opt: 0.2 (0.591), width:  16
 Scan time:  7.940

The best scores are:                                      opt bits E(85289)
NP_000632 (OMIM: 147681) interleukin-11 isoform 1  ( 199) 1338 211.2 8.7e-55
NP_001254647 (OMIM: 147681) interleukin-11 isoform ( 120)  797 129.7 1.9e-30


>>NP_000632 (OMIM: 147681) interleukin-11 isoform 1 prec  (199 aa)
 initn: 1338 init1: 1338 opt: 1338  Z-score: 1104.5  bits: 211.2 E(85289): 8.7e-55
Smith-Waterman score: 1338; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KE1 MNCVCRLVLVVLSLWPDTAVAPGPPPGPPRVSPDPRAELDSTVLLTRSLLADTRQLAAQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MNCVCRLVLVVLSLWPDTAVAPGPPPGPPRVSPDPRAELDSTVLLTRSLLADTRQLAAQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RDKFPADGDHNLDSLPTLAMSAGALGALQLPGVLTRLRADLLSYLRHVQWLRRAGGSSLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RDKFPADGDHNLDSLPTLAMSAGALGALQLPGVLTRLRADLLSYLRHVQWLRRAGGSSLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 TLEPELGTLQARLDRLLRRLQLLMSRLALPQPPPDPPAPPLAPPSSAWGGIRAAHAILGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TLEPELGTLQARLDRLLRRLQLLMSRLALPQPPPDPPAPPLAPPSSAWGGIRAAHAILGG
              130       140       150       160       170       180

              190         
pF1KE1 LHLTLDWAVRGLLLLKTRL
       :::::::::::::::::::
NP_000 LHLTLDWAVRGLLLLKTRL
              190         

>>NP_001254647 (OMIM: 147681) interleukin-11 isoform 2 [  (120 aa)
 initn: 797 init1: 797 opt: 797  Z-score: 667.8  bits: 129.7 E(85289): 1.9e-30
Smith-Waterman score: 797; 100.0% identity (100.0% similar) in 120 aa overlap (80-199:1-120)

      50        60        70        80        90       100         
pF1KE1 LADTRQLAAQLRDKFPADGDHNLDSLPTLAMSAGALGALQLPGVLTRLRADLLSYLRHVQ
                                     ::::::::::::::::::::::::::::::
NP_001                               MSAGALGALQLPGVLTRLRADLLSYLRHVQ
                                             10        20        30

     110       120       130       140       150       160         
pF1KE1 WLRRAGGSSLKTLEPELGTLQARLDRLLRRLQLLMSRLALPQPPPDPPAPPLAPPSSAWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WLRRAGGSSLKTLEPELGTLQARLDRLLRRLQLLMSRLALPQPPPDPPAPPLAPPSSAWG
               40        50        60        70        80        90

     170       180       190         
pF1KE1 GIRAAHAILGGLHLTLDWAVRGLLLLKTRL
       ::::::::::::::::::::::::::::::
NP_001 GIRAAHAILGGLHLTLDWAVRGLLLLKTRL
              100       110       120




199 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:49:04 2016 done: Mon Nov  7 04:49:05 2016
 Total Scan time:  7.940 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]