Result of FASTA (omim) for
pF1KE1761
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1761, 268 aa
1>>>pF1KE1761 268 - 268 aa - 268 aa
Library: /omim/omim.rfq.tfa
65089639 residues in 91964 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9796+/-0.00042; mu= 9.7467+/- 0.026
mean_var=285.8778+/-59.426, 0's: 0 Z-trim(120.3): 181 B-trim: 917 in 2/53
Lambda= 0.075855
statistics sampled from 36477 (36750) to 36477 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.4), width: 16
Scan time: 3.390
The best scores are: opt bits E(91964)
NP_001289561 (OMIM: 114170) calpain small subunit ( 268) 1826 212.8 5.8e-55
NP_001740 (OMIM: 114170) calpain small subunit 1 i ( 268) 1826 212.8 5.8e-55
NP_001003962 (OMIM: 114170) calpain small subunit ( 268) 1826 212.8 5.8e-55
XP_005259352 (OMIM: 114170) calpain small subunit ( 322) 1769 206.7 4.9e-53
XP_005259353 (OMIM: 114170) calpain small subunit ( 322) 1769 206.7 4.9e-53
XP_024307500 (OMIM: 114170) calpain small subunit ( 205) 1346 160.1 3.3e-39
XP_011525661 (OMIM: 114170) calpain small subunit ( 200) 1341 159.5 4.8e-39
NP_115706 (OMIM: 616767) calpain small subunit 2 [ ( 248) 1117 135.1 1.3e-31
NP_001289562 (OMIM: 114170) calpain small subunit ( 156) 1052 127.7 1.4e-29
NP_775111 (OMIM: 114240,253600,618129) calpain-3 i ( 309) 753 95.5 1.4e-19
NP_077320 (OMIM: 114240,253600,618129) calpain-3 i ( 815) 753 96.1 2.3e-19
NP_000061 (OMIM: 114240,253600,618129) calpain-3 i ( 821) 753 96.1 2.4e-19
NP_775110 (OMIM: 114240,253600,618129) calpain-3 i ( 729) 749 95.6 3e-19
NP_775113 (OMIM: 114240,253600,618129) calpain-3 i ( 156) 655 84.3 1.7e-16
NP_775112 (OMIM: 114240,253600,618129) calpain-3 i ( 156) 655 84.3 1.7e-16
NP_001185798 (OMIM: 114220,616907) calpain-1 catal ( 714) 634 83.0 1.8e-15
NP_001185797 (OMIM: 114220,616907) calpain-1 catal ( 714) 634 83.0 1.8e-15
XP_006718761 (OMIM: 114220,616907) calpain-1 catal ( 714) 634 83.0 1.8e-15
NP_005177 (OMIM: 114220,616907) calpain-1 catalyti ( 714) 634 83.0 1.8e-15
XP_011543594 (OMIM: 114220,616907) calpain-1 catal ( 714) 634 83.0 1.8e-15
NP_001139540 (OMIM: 114230) calpain-2 catalytic su ( 622) 606 79.8 1.4e-14
NP_001739 (OMIM: 114230) calpain-2 catalytic subun ( 700) 606 79.9 1.5e-14
XP_016855588 (OMIM: 606401) calpain-9 isoform X6 [ ( 495) 557 74.3 5.2e-13
NP_001306605 (OMIM: 606401) calpain-9 isoform 3 [H ( 627) 557 74.5 5.9e-13
NP_057536 (OMIM: 606401) calpain-9 isoform 2 [Homo ( 664) 557 74.5 6e-13
NP_006606 (OMIM: 606401) calpain-9 isoform 1 [Homo ( 690) 557 74.5 6.2e-13
NP_008989 (OMIM: 604822) calpain-11 [Homo sapiens] ( 739) 525 71.1 7.2e-12
XP_006715047 (OMIM: 604822) calpain-11 isoform X1 ( 740) 525 71.1 7.2e-12
XP_011512577 (OMIM: 604822) calpain-11 isoform X4 ( 743) 525 71.1 7.3e-12
XP_011512576 (OMIM: 604822) calpain-11 isoform X3 ( 744) 525 71.1 7.3e-12
XP_024308282 (OMIM: 606401) calpain-9 isoform X7 [ ( 403) 503 68.3 2.8e-11
XP_024308281 (OMIM: 606401) calpain-9 isoform X7 [ ( 403) 503 68.3 2.8e-11
XP_011542322 (OMIM: 606401) calpain-9 isoform X5 [ ( 526) 503 68.5 3.2e-11
XP_011542321 (OMIM: 606401) calpain-9 isoform X4 [ ( 658) 503 68.6 3.6e-11
XP_016855587 (OMIM: 606401) calpain-9 isoform X3 [ ( 693) 503 68.6 3.7e-11
XP_011542320 (OMIM: 606401) calpain-9 isoform X2 [ ( 695) 503 68.6 3.7e-11
XP_011542319 (OMIM: 606401) calpain-9 isoform X1 [ ( 721) 503 68.7 3.8e-11
XP_006715048 (OMIM: 604822) calpain-11 isoform X2 ( 724) 448 62.7 2.5e-09
NP_944490 (OMIM: 182520) sorcin isoform B [Homo sa ( 183) 359 52.0 1e-06
NP_003121 (OMIM: 182520) sorcin isoform A [Homo sa ( 198) 359 52.0 1.1e-06
NP_001243821 (OMIM: 182520) sorcin isoform D [Homo ( 180) 346 50.5 2.7e-06
NP_036330 (OMIM: 607030) grancalcin isoform b [Hom ( 217) 347 50.8 2.8e-06
NP_001243820 (OMIM: 182520) sorcin isoform C [Homo ( 195) 346 50.6 2.8e-06
XP_016860755 (OMIM: 610228) calpain-13 isoform X2 ( 665) 351 52.0 3.7e-06
XP_016860753 (OMIM: 610228) calpain-13 isoform X1 ( 669) 351 52.0 3.7e-06
XP_011531462 (OMIM: 610228) calpain-13 isoform X1 ( 669) 351 52.0 3.7e-06
XP_011531461 (OMIM: 610228) calpain-13 isoform X1 ( 669) 351 52.0 3.7e-06
NP_653176 (OMIM: 610228) calpain-13 [Homo sapiens] ( 669) 351 52.0 3.7e-06
XP_011531463 (OMIM: 610228) calpain-13 isoform X1 ( 669) 351 52.0 3.7e-06
NP_001317200 (OMIM: 607030) grancalcin isoform d [ ( 198) 339 49.8 4.8e-06
>>NP_001289561 (OMIM: 114170) calpain small subunit 1 is (268 aa)
initn: 1826 init1: 1826 opt: 1826 Z-score: 1108.3 bits: 212.8 E(91964): 5.8e-55
Smith-Waterman score: 1826; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268)
10 20 30 40 50 60
pF1KE1 MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 MNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 FDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMF
190 200 210 220 230 240
250 260
pF1KE1 RAFKSLDKDGTGQIQVNIQEWLQLTMYS
::::::::::::::::::::::::::::
NP_001 RAFKSLDKDGTGQIQVNIQEWLQLTMYS
250 260
>>NP_001740 (OMIM: 114170) calpain small subunit 1 isofo (268 aa)
initn: 1826 init1: 1826 opt: 1826 Z-score: 1108.3 bits: 212.8 E(91964): 5.8e-55
Smith-Waterman score: 1826; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268)
10 20 30 40 50 60
pF1KE1 MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 MNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 FDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMF
190 200 210 220 230 240
250 260
pF1KE1 RAFKSLDKDGTGQIQVNIQEWLQLTMYS
::::::::::::::::::::::::::::
NP_001 RAFKSLDKDGTGQIQVNIQEWLQLTMYS
250 260
>>NP_001003962 (OMIM: 114170) calpain small subunit 1 is (268 aa)
initn: 1826 init1: 1826 opt: 1826 Z-score: 1108.3 bits: 212.8 E(91964): 5.8e-55
Smith-Waterman score: 1826; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268)
10 20 30 40 50 60
pF1KE1 MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 MNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 FDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMF
190 200 210 220 230 240
250 260
pF1KE1 RAFKSLDKDGTGQIQVNIQEWLQLTMYS
::::::::::::::::::::::::::::
NP_001 RAFKSLDKDGTGQIQVNIQEWLQLTMYS
250 260
>>XP_005259352 (OMIM: 114170) calpain small subunit 1 is (322 aa)
initn: 1769 init1: 1769 opt: 1769 Z-score: 1073.8 bits: 206.7 E(91964): 4.9e-53
Smith-Waterman score: 1769; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)
10 20 30 40 50 60
pF1KE1 MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 MNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 FDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMF
190 200 210 220 230 240
250 260
pF1KE1 RAFKSLDKDGTGQIQVNIQEWLQLTMYS
::::::::::::::::::::
XP_005 RAFKSLDKDGTGQIQVNIQEVRTPILGYGCLGGPHPSALHTSSELQSPSSYFASRPWVRA
250 260 270 280 290 300
>>XP_005259353 (OMIM: 114170) calpain small subunit 1 is (322 aa)
initn: 1769 init1: 1769 opt: 1769 Z-score: 1073.8 bits: 206.7 E(91964): 4.9e-53
Smith-Waterman score: 1769; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)
10 20 30 40 50 60
pF1KE1 MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 MNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 FDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMF
190 200 210 220 230 240
250 260
pF1KE1 RAFKSLDKDGTGQIQVNIQEWLQLTMYS
::::::::::::::::::::
XP_005 RAFKSLDKDGTGQIQVNIQEVRTPILGYGCLGGPHPSALHTSSELQSPSSYFASRPWVRA
250 260 270 280 290 300
>>XP_024307500 (OMIM: 114170) calpain small subunit 1 is (205 aa)
initn: 1346 init1: 1346 opt: 1346 Z-score: 825.5 bits: 160.1 E(91964): 3.3e-39
Smith-Waterman score: 1346; 98.5% identity (99.5% similar) in 202 aa overlap (67-268:4-205)
40 50 60 70 80 90
pF1KE1 GGGGGGGGGGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESE
.: .::::::::::::::::::::::::::
XP_024 MKGTATNEAAAQYNPEPPPPRTHYSNIEANESE
10 20 30
100 110 120 130 140 150
pF1KE1 EVRQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 EVRQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTT
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE1 GKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 GKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRR
100 110 120 130 140 150
220 230 240 250 260
pF1KE1 YSDESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 YSDESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS
160 170 180 190 200
>>XP_011525661 (OMIM: 114170) calpain small subunit 1 is (200 aa)
initn: 1341 init1: 1341 opt: 1341 Z-score: 822.6 bits: 159.5 E(91964): 4.8e-39
Smith-Waterman score: 1341; 99.0% identity (100.0% similar) in 200 aa overlap (69-268:1-200)
40 50 60 70 80 90
pF1KE1 GGGGGGGGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEV
..::::::::::::::::::::::::::::
XP_011 MGEAAAQYNPEPPPPRTHYSNIEANESEEV
10 20 30
100 110 120 130 140 150
pF1KE1 RQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGK
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE1 LGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYS
100 110 120 130 140 150
220 230 240 250 260
pF1KE1 DESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS
160 170 180 190 200
>>NP_115706 (OMIM: 616767) calpain small subunit 2 [Homo (248 aa)
initn: 1068 init1: 1068 opt: 1117 Z-score: 689.3 bits: 135.1 E(91964): 1.3e-31
Smith-Waterman score: 1122; 67.2% identity (86.4% similar) in 250 aa overlap (20-268:10-248)
10 20 30 40 50 60
pF1KE1 MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMR
: :::..::::. :::: ::: . ::
NP_115 MFLAKALLEGADRGLGEALGGLF-------GGGGQRREGGGRNIGG----
10 20 30
70 80 90 100 110
pF1KE1 ILGGVISAISEAAA-QYNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATE
:.::... :::::: ::.::::: . :....::.::::::.::. :.:::: ::::.::.
NP_115 IVGGIVNFISEAAAAQYTPEPPPTQQHFTSVEASESEEVRRFRQQFTQLAGPDMEVGATD
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE1 LMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYK
::::::::...: :::::::..:::::.:.:::::::::::::::::::::::.:: .::
NP_115 LMNILNKVLSKHKDLKTDGFSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVYK
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE1 QFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAM
:.: :.::.. ::.: ::..::::.:::.::.::.:::..:.:.:::.::::::::::::
NP_115 QYDRDHSGSLGSSQLRGALQAAGFQLNEQLYQMIVRRYANEDGDMDFNNFISCLVRLDAM
160 170 180 190 200 210
240 250 260
pF1KE1 FRAFKSLDKDGTGQIQVNIQEWLQLTMYS
::::::::.: : :::.:.:::::::::
NP_115 FRAFKSLDRDRDGLIQVSIKEWLQLTMYS
220 230 240
>>NP_001289562 (OMIM: 114170) calpain small subunit 1 is (156 aa)
initn: 1052 init1: 1052 opt: 1052 Z-score: 652.7 bits: 127.7 E(91964): 1.4e-29
Smith-Waterman score: 1052; 100.0% identity (100.0% similar) in 156 aa overlap (113-268:1-156)
90 100 110 120 130 140
pF1KE1 PRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGID
::::::::::::::::::::::::::::::
NP_001 MEVSATELMNILNKVVTRHPDLKTDGFGID
10 20 30
150 160 170 180 190 200
pF1KE1 TCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAG
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE1 FHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWL
100 110 120 130 140 150
pF1KE1 QLTMYS
::::::
NP_001 QLTMYS
>>NP_775111 (OMIM: 114240,253600,618129) calpain-3 isofo (309 aa)
initn: 818 init1: 744 opt: 753 Z-score: 473.1 bits: 95.5 E(91964): 1.4e-19
Smith-Waterman score: 753; 54.6% identity (80.9% similar) in 194 aa overlap (75-268:122-309)
50 60 70 80 90 100
pF1KE1 GGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFRRL
. .:.: : . .:::: .::: .
NP_775 FVSDRANSNKELGVDQESEEGKGKTSPDKQKQSPQPQPGSSD------QESEEQQQFRNI
100 110 120 130 140
110 120 130 140 150 160
pF1KE1 FAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF
: :.::::::. : :: ..:: ::..: :::: :: ...::::.:.::.: .:::...::
NP_775 FKQIAGDDMEICADELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDGSGKLNLQEF
150 160 170 180 190 200
170 180 190 200 210 220
pF1KE1 KYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGNM
..:::.:: :: :.:..:::.:::: : :. .: . ::::::..::..: ::.:. :.
NP_775 HHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITMRYADKHMNI
210 220 230 240 250 260
230 240 250 260
pF1KE1 DFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS
:::.:: :.:::..:::::...:::: : :..:. ::::::::.
NP_775 DFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQLTMYA
270 280 290 300
268 residues in 1 query sequences
65089639 residues in 91964 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Oct 23 17:42:02 2018 done: Tue Oct 23 17:42:03 2018
Total Scan time: 3.390 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]