FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1772, 279 aa
  1>>>pF1KE1772     279 - 279 aa - 279 aa
Library: /omim/omim.rfq.tfa
  64369986 residues in 92320 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1581+/-0.000274; mu= -0.0788+/- 0.017
 mean_var=247.5482+/-50.397, 0's: 0 Z-trim(126.5): 5  B-trim: 973 in 1/58
 Lambda= 0.081516
 statistics sampled from 54755 (54770) to 54755 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.856), E-opt: 0.2 (0.593), width:  16
 Scan time:  4.480

The best scores are:                                      opt bits E(92320)
NP_005470 (OMIM: 602503) proto-oncogene FRAT1 [Hom ( 279) 1913 236.8 3.9e-62
NP_036215 (OMIM: 605006) GSK-3-binding protein FRA ( 233)  872 114.3 2.4e-25


>>NP_005470 (OMIM: 602503) proto-oncogene FRAT1 [Homo sa  (279 aa)
 initn: 1913 init1: 1913 opt: 1913  Z-score: 1237.2  bits: 236.8 E(92320): 3.9e-62
Smith-Waterman score: 1913; 100.0% identity (100.0% similar) in 279 aa overlap (1-279:1-279)

               10        20        30        40        50        60
pF1KE1 MPCRREEEEEAGEEAEGEEEEEDSFLLLQQSVALGSSGEVDRLVAQIGETLQLDAAQHSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MPCRREEEEEAGEEAEGEEEEEDSFLLLQQSVALGSSGEVDRLVAQIGETLQLDAAQHSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ASPCGPPGAPLRAPGPLAAAVPADKARSPAVPLLLPPALAETVGPAPPGVLRCALGDRGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ASPCGPPGAPLRAPGPLAAAVPADKARSPAVPLLLPPALAETVGPAPPGVLRCALGDRGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VRGRAAPYCVAELATGPSALSPLPPQADLDGPPGAGKQGIPQPLSGPCRRGWLRGAAASR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VRGRAAPYCVAELATGPSALSPLPPQADLDGPPGAGKQGIPQPLSGPCRRGWLRGAAASR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 RLQQRRGSQPETRTGDDDPHRLLQQLVLSGNLIKEAVRRLHSRRLQLRAKLPQRPLLGPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RLQQRRGSQPETRTGDDDPHRLLQQLVLSGNLIKEAVRRLHSRRLQLRAKLPQRPLLGPL
              190       200       210       220       230       240

              250       260       270         
pF1KE1 SAPVHEPPSPRSPRAACSDPGASGRAQLRTGDGVLVPGS
       :::::::::::::::::::::::::::::::::::::::
NP_005 SAPVHEPPSPRSPRAACSDPGASGRAQLRTGDGVLVPGS
              250       260       270         

>>NP_036215 (OMIM: 605006) GSK-3-binding protein FRAT2 [  (233 aa)
 initn: 1169 init1: 868 opt: 872  Z-score: 576.6  bits: 114.3 E(92320): 2.4e-25
Smith-Waterman score: 1136; 71.2% identity (78.0% similar) in 264 aa overlap (1-263:1-231)

               10        20        30        40        50        60
pF1KE1 MPCRREEEEEAGEEAEGEEEEEDSFLLLQQSVALGSSGEVDRLVAQIGETLQLDAAQHSP
       :::::::::::::::::::::.::::::::::.:::::::::::::::::::::::: ::
NP_036 MPCRREEEEEAGEEAEGEEEEDDSFLLLQQSVTLGSSGEVDRLVAQIGETLQLDAAQDSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ASPCGPPGAPLRAPGPLAAAVPADKARSPAVPLLLPPALAETVGPAPPGVLRCALGDRGR
       ::::.:::.:::::::::::::::::: :::::::::: :::::::: :.::::::::::
NP_036 ASPCAPPGVPLRAPGPLAAAVPADKARPPAVPLLLPPASAETVGPAPSGALRCALGDRGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VRGRAAPYCVAELATGPSALSPLPPQADLDGPPGAGKQGIPQPLSGPCRRGWLRGAAASR
       ::::::::::::.:.:::::            ::            :::::::: :..::
NP_036 VRGRAAPYCVAEVAAGPSAL------------PG------------PCRRGWLRDAVTSR
              130       140                               150      

              190       200       210       220       230       240
pF1KE1 RLQQRRGSQPETRTGDDDPHRLLQQLVLSGNLIKEAVRRLHSRRLQLRAKLPQRPLLGPL
       :::::: .:  .:.::::::::::::::::::::::::::.     . :        :: 
NP_036 RLQQRRWTQAGARAGDDDPHRLLQQLVLSGNLIKEAVRRLQRAVAAVAAT-------GPA
        160       170       180       190       200                

              250        260       270         
pF1KE1 SAPVHEPPSPRS-PRAACSDPGASGRAQLRTGDGVLVPGS
       :::   : . :: :     .:..:                
NP_036 SAP--GPGGGRSGPDRIALQPSGSLL              
     210         220       230                 




279 residues in 1 query   sequences
64369986 residues in 92320 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:44:33 2019 done: Thu Oct 24 21:44:34 2019
 Total Scan time:  4.480 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]