FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1780, 288 aa
  1>>>pF1KE1780 288 - 288 aa - 288 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6044+/-0.000631; mu= 16.1227+/- 0.038
 mean_var=99.9595+/-20.157, 0's: 0 Z-trim(114.4): 19  B-trim: 152 in 1/52
 Lambda= 0.128281
 statistics sampled from 14987 (14997) to 14987 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.461), width:  16
 Scan time:  2.690

The best scores are:                                      opt bits E(32554)
CCDS33428.1 PDCD1 gene_id:5133|Hs108|chr2          ( 288) 2025 384.2  6e-107


>>CCDS33428.1 PDCD1 gene_id:5133|Hs108|chr2               (288 aa)
 initn: 2025 init1: 2025 opt: 2025  Z-score: 2033.6  bits: 384.2 E(32554): 6e-107
Smith-Waterman score: 2025; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KE1 MQIPQAPWPVVWAVLQLGWRPGWFLDSPDRPWNPPTFSPALLVVTEGDNATFTCSFSNTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MQIPQAPWPVVWAVLQLGWRPGWFLDSPDRPWNPPTFSPALLVVTEGDNATFTCSFSNTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRPAGQFQTLVVGVVGGLLGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRPAGQFQTLVVGVVGGLLGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LVLLVWVLAVICSRAARGTIGARRTGQPLKEDPSAVPVFSVDYGELDFQWREKTPEPPVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LVLLVWVLAVICSRAARGTIGARRTGQPLKEDPSAVPVFSVDYGELDFQWREKTPEPPVP
              190       200       210       220       230       240

              250       260       270       280        
pF1KE1 CVPEQTEYATIVFPSGMGTSSPARRGSADGPRSAQPLRPEDGHCSWPL
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CVPEQTEYATIVFPSGMGTSSPARRGSADGPRSAQPLRPEDGHCSWPL
              250       260       270       280        




288 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 17:25:19 2016 done: Tue Nov  8 17:25:19 2016
 Total Scan time:  2.690 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]