FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1780, 288 aa
  1>>>pF1KE1780 288 - 288 aa - 288 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5449+/-0.000269; mu= 16.7011+/- 0.017
 mean_var=106.1325+/-21.137, 0's: 0 Z-trim(121.9): 10  B-trim: 0 in 0/57
 Lambda= 0.124494
 statistics sampled from 39116 (39131) to 39116 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.459), width:  16
 Scan time:  6.370

The best scores are:                                      opt bits E(85289)
NP_005009 (OMIM: 600244) programmed cell death pro ( 288) 2025 373.4 2.9e-103
XP_016859782 (OMIM: 600244) PREDICTED: programmed  ( 287) 2007 370.1 2.7e-102
XP_006712636 (OMIM: 600244) PREDICTED: programmed  ( 198) 1377 256.8 2.4e-68


>>NP_005009 (OMIM: 600244) programmed cell death protein  (288 aa)
 initn: 2025 init1: 2025 opt: 2025  Z-score: 1975.0  bits: 373.4 E(85289): 2.9e-103
Smith-Waterman score: 2025; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KE1 MQIPQAPWPVVWAVLQLGWRPGWFLDSPDRPWNPPTFSPALLVVTEGDNATFTCSFSNTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MQIPQAPWPVVWAVLQLGWRPGWFLDSPDRPWNPPTFSPALLVVTEGDNATFTCSFSNTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRPAGQFQTLVVGVVGGLLGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRPAGQFQTLVVGVVGGLLGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LVLLVWVLAVICSRAARGTIGARRTGQPLKEDPSAVPVFSVDYGELDFQWREKTPEPPVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LVLLVWVLAVICSRAARGTIGARRTGQPLKEDPSAVPVFSVDYGELDFQWREKTPEPPVP
              190       200       210       220       230       240

              250       260       270       280        
pF1KE1 CVPEQTEYATIVFPSGMGTSSPARRGSADGPRSAQPLRPEDGHCSWPL
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 CVPEQTEYATIVFPSGMGTSSPARRGSADGPRSAQPLRPEDGHCSWPL
              250       260       270       280        

>>XP_016859782 (OMIM: 600244) PREDICTED: programmed cell  (287 aa)
 initn: 1524 init1: 1452 opt: 2007  Z-score: 1957.6  bits: 370.1 E(85289): 2.7e-102
Smith-Waterman score: 2007; 99.7% identity (99.7% similar) in 288 aa overlap (1-288:1-287)

               10        20        30        40        50        60
pF1KE1 MQIPQAPWPVVWAVLQLGWRPGWFLDSPDRPWNPPTFSPALLVVTEGDNATFTCSFSNTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQIPQAPWPVVWAVLQLGWRPGWFLDSPDRPWNPPTFSPALLVVTEGDNATFTCSFSNTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRPAGQFQTLVVGVVGGLLGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRPAGQFQTLVVGVVGGLLGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LVLLVWVLAVICSRAARGTIGARRTGQPLKEDPSAVPVFSVDYGELDFQWREKTPEPPVP
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_016 LVLLVWVLAVICSRAARGTIGARRTGQPL-EDPSAVPVFSVDYGELDFQWREKTPEPPVP
              190       200        210       220       230         

              250       260       270       280        
pF1KE1 CVPEQTEYATIVFPSGMGTSSPARRGSADGPRSAQPLRPEDGHCSWPL
       ::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CVPEQTEYATIVFPSGMGTSSPARRGSADGPRSAQPLRPEDGHCSWPL
     240       250       260       270       280       

>>XP_006712636 (OMIM: 600244) PREDICTED: programmed cell  (198 aa)
 initn: 1377 init1: 1377 opt: 1377  Z-score: 1348.0  bits: 256.8 E(85289): 2.4e-68
Smith-Waterman score: 1377; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)

               10        20        30        40        50        60
pF1KE1 MQIPQAPWPVVWAVLQLGWRPGWFLDSPDRPWNPPTFSPALLVVTEGDNATFTCSFSNTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MQIPQAPWPVVWAVLQLGWRPGWFLDSPDRPWNPPTFSPALLVVTEGDNATFTCSFSNTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRPAGQFQTLVVGVVGGLLGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRPAGQFQTLVVGVVGGLLGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LVLLVWVLAVICSRAARGTIGARRTGQPLKEDPSAVPVFSVDYGELDFQWREKTPEPPVP
       ::::::::::::::::::                                          
XP_006 LVLLVWVLAVICSRAARG                                          
              190                                                  




288 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 17:25:20 2016 done: Tue Nov  8 17:25:21 2016
 Total Scan time:  6.370 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]