FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1843, 358 aa
  1>>>pF1KE1843     358 - 358 aa - 358 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3530+/-0.000913; mu= 7.1479+/- 0.054
 mean_var=151.0052+/-31.921, 0's: 0 Z-trim(110.5): 72  B-trim: 704 in 2/51
 Lambda= 0.104371
 statistics sampled from 11767 (11839) to 11767 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.354), width:  16
 Scan time:  1.430

The best scores are:                                      opt bits E(33420)
CCDS32674.1 SKAP1 gene_id:8631|Hs109|chr17         ( 359) 2440 379.1 3.2e-105
CCDS5400.1 SKAP2 gene_id:8935|Hs109|chr7           ( 359)  992 161.1 1.4e-39


>>CCDS32674.1 SKAP1 gene_id:8631|Hs109|chr17              (359 aa)
 initn: 1985 init1: 1985 opt: 2440  Z-score: 2002.7  bits: 379.1 E(33420): 3.2e-105
Smith-Waterman score: 2440; 99.7% identity (99.7% similar) in 359 aa overlap (1-358:1-359)

               10        20        30        40        50        60
pF1KE1 MQAAALPEEIRWLLEDAEEFLAEGLRNENLSAVARDHRDHILRGFQQIKARYYWDFQPQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MQAAALPEEIRWLLEDAEEFLAEGLRNENLSAVARDHRDHILRGFQQIKARYYWDFQPQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GDIGQDSSDDNHSGTLGLSLTSDAPFLSDYQDEGMEDIVKGAQELDNVIKQGYLEKKSKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GDIGQDSSDDNHSGTLGLSLTSDAPFLSDYQDEGMEDIVKGAQELDNVIKQGYLEKKSKD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 HSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGVRMAPHLRRDSKKESCFEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGVRMAPHLRRDSKKESCFEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 TSQDRRSYEFTATSPAEARDWVDQISFLLKDLSSLTIPYEEDEEEEEKEETYDDIDGFDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TSQDRRSYEFTATSPAEARDWVDQISFLLKDLSSLTIPYEEDEEEEEKEETYDDIDGFDS
              190       200       210       220       230       240

              250       260       270       280       290          
pF1KE1 PSCGSQCRPTILPGSVGIKEPTEEKEEEDIYEVLPDEEHDLEEDESGTRRKG-DYASYYQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
CCDS32 PSCGSQCRPTILPGSVGIKEPTEEKEEEDIYEVLPDEEHDLEEDESGTRRKGVDYASYYQ
              250       260       270       280       290       300

     300       310       320       330       340       350        
pF1KE1 GLWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYLTTAFEVEER
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GLWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYLTTAFEVEER
              310       320       330       340       350         

>>CCDS5400.1 SKAP2 gene_id:8935|Hs109|chr7                (359 aa)
 initn: 1022 init1: 505 opt: 992  Z-score: 824.3  bits: 161.1 E(33420): 1.4e-39
Smith-Waterman score: 992; 44.3% identity (69.8% similar) in 361 aa overlap (6-355:13-359)

                      10        20        30        40        50   
pF1KE1        MQAAALPEEIRWLLEDAEEFLAEGLRNENLSAVARDHRDHILRGFQQIKARYY
                   :::::: :: :.: :.:. :..::::  :...:. ... ....:. : 
CCDS54 MPNPSSTSSPYPLPEEIRNLLADVETFVADILKGENLSKKAKEKRESLIKKIKDVKSIYL
               10        20        30        40        50        60

            60        70         80        90       100            
pF1KE1 WDFQPQGGDIGQDSSDDNHSGTLG-LSLTSDAPFLSDYQDEGMEDIVK----GAQELDNV
        .:: .:     .  ::  .:    .::.:.     : .::.  : ..    .::.:  :
CCDS54 QEFQDKGDAEDGEEYDDPFAGPPDTISLASER---YDKDDEAPSDGAQFPPIAAQDLPFV
               70        80        90          100       110       

      110       120       130       140       150       160        
pF1KE1 IKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGVRMAPHL
       .: :::::. :::::.: :::::::..:. .::::...:.:: :: : : ::.:::   :
CCDS54 LKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYSVRMNNTL
       120       130       140       150       160       170       

      170       180       190       200       210       220        
pF1KE1 RRDSKKESCFELTSQDRRSYEFTATSPAEARDWVDQISFLLKDLSSLTIPYEEDEEEEEK
       :.:.::. :::... :.: :.:::.:: .:..::.:..:.:.:. :  ::    :. .:.
CCDS54 RKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLKFVLQDMESDIIP----EDYDER
       180       190       200       210       220           230   

      230          240       250       260       270       280     
pF1KE1 EETYDDIDG---FDSPSCGSQCRPTILPGSVGIKEPTEEKEEEDIYEVLPDEEHDLEED-
        : :::.:    ...:  .::      : .  : :   : ::::   :  .:.. . .: 
CCDS54 GELYDDVDHPLPISNPLTSSQ------PIDDEIYEELPE-EEEDSAPVKVEEQRKMSQDS
           240       250             260        270       280      

            290       300       310       320       330       340  
pF1KE1 --ESGTRRKGDYASYYQGLWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVG
         ...  .. :::..::::::: :   :::::.:::.: ::::::: :::::::... .:
CCDS54 VHHTSGDKSTDYANFYQGLWDCTGAFSDELSFKRGDVIYILSKEYNRYGWWVGEMKGAIG
        290       300       310       320       330       340      

            350        
pF1KE1 IVPKEYLTTAFEVEER
       .::: :.   ...   
CCDS54 LVPKAYIMEMYDI   
        350            




358 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:27:47 2019 done: Thu Oct 24 21:27:47 2019
 Total Scan time:  1.430 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]