Result of FASTA (ccds) for
pF1KE2307
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2307, 302 aa
1>>>pF1KE2307 302 - 302 aa - 302 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7402+/-0.000987; mu= 9.0880+/- 0.059
mean_var=143.7478+/-40.724, 0's: 0 Z-trim(106.7): 110 B-trim: 489 in 1/48
Lambda= 0.106973
statistics sampled from 9034 (9158) to 9034 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.281), width: 16
Scan time: 2.560
The best scores are: opt bits E(32554)
CCDS45841.1 HRH4 gene_id:59340|Hs108|chr18 ( 302) 2002 320.8 8.2e-88
CCDS11887.1 HRH4 gene_id:59340|Hs108|chr18 ( 390) 1612 260.7 1.3e-69
CCDS13493.1 HRH3 gene_id:11255|Hs108|chr20 ( 445) 351 66.1 5.4e-11
>>CCDS45841.1 HRH4 gene_id:59340|Hs108|chr18 (302 aa)
initn: 2002 init1: 2002 opt: 2002 Z-score: 1690.0 bits: 320.8 E(32554): 8.2e-88
Smith-Waterman score: 2002; 100.0% identity (100.0% similar) in 302 aa overlap (1-302:1-302)
10 20 30 40 50 60
pF1KE2 MPDTNSTINLSLSTRVTLAFFMSLVAFAIMLGNALVILAFVVDKNLRHRSSYFFLNLAIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MPDTNSTINLSLSTRVTLAFFMSLVAFAIMLGNALVILAFVVDKNLRHRSSYFFLNLAIS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 DFFVVSESWKDEGSECEPGFFSEWYILAITSFLEFVIPVILVAYFNMNIYWSLWKRDHLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DFFVVSESWKDEGSECEPGFFSEWYILAITSFLEFVIPVILVAYFNMNIYWSLWKRDHLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 RCQSHPGLTAVSSNICGHSFRGRLSSRRSLSASTEVPASFHSERQRRKSSLMFSSRTKMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RCQSHPGLTAVSSNICGHSFRGRLSSRRSLSASTEVPASFHSERQRRKSSLMFSSRTKMN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 SNTIASKMGSFSQSDSVALHQREHVELLRARRLAKSLAILLGVFAVCWAPYSLFTIVLSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SNTIASKMGSFSQSDSVALHQREHVELLRARRLAKSLAILLGVFAVCWAPYSLFTIVLSF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 YSSATGPKSVWYRIAFWLQWFNSFVNPLLYPLCHKRFQKAFLKIFCIKKQPLPSQHSRSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YSSATGPKSVWYRIAFWLQWFNSFVNPLLYPLCHKRFQKAFLKIFCIKKQPLPSQHSRSV
250 260 270 280 290 300
pF1KE2 SS
::
CCDS45 SS
>>CCDS11887.1 HRH4 gene_id:59340|Hs108|chr18 (390 aa)
initn: 1612 init1: 1612 opt: 1612 Z-score: 1363.3 bits: 260.7 E(32554): 1.3e-69
Smith-Waterman score: 1612; 97.2% identity (99.2% similar) in 246 aa overlap (57-302:145-390)
30 40 50 60 70 80
pF1KE2 FAIMLGNALVILAFVVDKNLRHRSSYFFLNLAISDFFVVSESWKDEGSECEPGFFSEWYI
:. . ...::::::::::::::::::::::
CCDS11 SVSNAVSYRTQHTGVLKIVTLMVAVWVLAFLVNGPMILVSESWKDEGSECEPGFFSEWYI
120 130 140 150 160 170
90 100 110 120 130 140
pF1KE2 LAITSFLEFVIPVILVAYFNMNIYWSLWKRDHLSRCQSHPGLTAVSSNICGHSFRGRLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LAITSFLEFVIPVILVAYFNMNIYWSLWKRDHLSRCQSHPGLTAVSSNICGHSFRGRLSS
180 190 200 210 220 230
150 160 170 180 190 200
pF1KE2 RRSLSASTEVPASFHSERQRRKSSLMFSSRTKMNSNTIASKMGSFSQSDSVALHQREHVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RRSLSASTEVPASFHSERQRRKSSLMFSSRTKMNSNTIASKMGSFSQSDSVALHQREHVE
240 250 260 270 280 290
210 220 230 240 250 260
pF1KE2 LLRARRLAKSLAILLGVFAVCWAPYSLFTIVLSFYSSATGPKSVWYRIAFWLQWFNSFVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LLRARRLAKSLAILLGVFAVCWAPYSLFTIVLSFYSSATGPKSVWYRIAFWLQWFNSFVN
300 310 320 330 340 350
270 280 290 300
pF1KE2 PLLYPLCHKRFQKAFLKIFCIKKQPLPSQHSRSVSS
::::::::::::::::::::::::::::::::::::
CCDS11 PLLYPLCHKRFQKAFLKIFCIKKQPLPSQHSRSVSS
360 370 380 390
>--
initn: 413 init1: 392 opt: 393 Z-score: 346.6 bits: 72.6 E(32554): 5.5e-13
Smith-Waterman score: 393; 56.7% identity (72.4% similar) in 134 aa overlap (1-131:1-132)
10 20 30 40 50 60
pF1KE2 MPDTNSTINLSLSTRVTLAFFMSLVAFAIMLGNALVILAFVVDKNLRHRSSYFFLNLAIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MPDTNSTINLSLSTRVTLAFFMSLVAFAIMLGNALVILAFVVDKNLRHRSSYFFLNLAIS
10 20 30 40 50 60
70 80 90 100 110
pF1KE2 DFFV--VSESWKDEGSECEPGFFSEWYILAITS-FLEFVIPVILVAYFNMNIYWSLWKRD
:::: .: . : : .: .. .:. .: . : .. .... : :. .
CCDS11 DFFVGVISIPLYIPHTLFEWDFGKEICVFWLTTDYLLCTASVYNIVLISYDRYLSV--SN
70 80 90 100 110
120 130 140 150 160 170
pF1KE2 HLSRCQSHPGLTAVSSNICGHSFRGRLSSRRSLSASTEVPASFHSERQRRKSSLMFSSRT
.: .: :. .
CCDS11 AVSYRTQHTGVLKIVTLMVAVWVLAFLVNGPMILVSESWKDEGSECEPGFFSEWYILAIT
120 130 140 150 160 170
>>CCDS13493.1 HRH3 gene_id:11255|Hs108|chr20 (445 aa)
initn: 614 init1: 196 opt: 351 Z-score: 310.8 bits: 66.1 E(32554): 5.4e-11
Smith-Waterman score: 393; 32.1% identity (54.7% similar) in 265 aa overlap (72-294:185-439)
50 60 70 80 90 100
pF1KE2 VDKNLRHRSSYFFLNLAISDFFVVSESWKDEGSECEPGFFSEWYILAITSFLEFVIPVIL
:: .: :: .::.: .: ::: : .
CCDS13 KMLLVWVLAFLLYGPAILSWEYLSGGSSIPEG-HCYAEFFYNWYFLITASTLEFFTPFLS
160 170 180 190 200 210
110 120
pF1KE2 VAYFNMNIY------------------------------------WSLWKRDHLSRCQSH
:..::..:: :. :.. : :
CCDS13 VTFFNLSIYLNIQRRTRLRLDGAREAAGPEPPPEAQPSPPPPPGCWGCWQKGHGEAMPLH
220 230 240 250 260 270
130 140 150 160 170 180
pF1KE2 P---GLTAVSSNICGHSFRGRLSSRRSLSASTEVPASFHSERQRRKSSLMFSSRTKMNSN
: .::... :.. : .. :... : .: :. .: :: .:. . .:
CCDS13 RYGVGEAAVGAEA-GEATLGGGGGGGSVASPTSSSGS-SSRGTERPRSLKRGSKPSASSA
280 290 300 310 320 330
190 200 210 220 230 240
pF1KE2 TIASKMGSFSQSDSVALHQREHVELLRARRLAKSLAILLGVFAVCWAPYSLFTIVLSFYS
.. ..: ::: . :: .: : :..:::::.....:..:::::.:. :. .
CCDS13 SLEKRMKMVSQS----FTQR--FRLSRDRKVAKSLAVIVSIFGLCWAPYTLLMIIRAACH
340 350 360 370 380
250 260 270 280 290
pF1KE2 SATGPKSVWYRIAFWLQWFNSFVNPLLYPLCHKRFQKAFLKIFCIKK---QPLPSQHSRS
. : . ::. .::: : :: :::.::::::. :..:: :..: .: :: :
CCDS13 GHCVP-DYWYETSFWLLWANSAVNPVLYPLCHHSFRRAFTKLLCPQKLKIQPHSSLEHCW
390 400 410 420 430 440
300
pF1KE2 VSS
CCDS13 K
302 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 13:42:59 2016 done: Sun Nov 6 13:42:59 2016
Total Scan time: 2.560 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]