Result of FASTA (omim) for
pF1KE2328
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2328, 355 aa
1>>>pF1KE2328 355 - 355 aa - 355 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7561+/-0.000398; mu= 20.0491+/- 0.025
mean_var=73.4715+/-15.350, 0's: 0 Z-trim(111.3): 33 B-trim: 0 in 0/55
Lambda= 0.149629
statistics sampled from 19769 (19799) to 19769 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.232), width: 16
Scan time: 7.280
The best scores are: opt bits E(85289)
NP_478136 (OMIM: 606604) F-box only protein 32 iso ( 355) 2415 530.8 1.7e-150
NP_904356 (OMIM: 609098) F-box only protein 25 iso ( 358) 1544 342.8 6.8e-94
NP_680482 (OMIM: 606604) F-box only protein 32 iso ( 210) 1438 319.7 3.6e-87
XP_011533050 (OMIM: 609098) PREDICTED: F-box only ( 367) 1410 313.9 3.5e-85
XP_016868802 (OMIM: 609098) PREDICTED: F-box only ( 367) 1410 313.9 3.5e-85
NP_904357 (OMIM: 609098) F-box only protein 25 iso ( 367) 1410 313.9 3.5e-85
NP_036305 (OMIM: 609098) F-box only protein 25 iso ( 291) 1221 273.0 5.7e-73
XP_011533051 (OMIM: 609098) PREDICTED: F-box only ( 300) 1087 244.1 3e-64
NP_001229392 (OMIM: 606604) F-box only protein 32 ( 262) 990 223.1 5.5e-58
XP_016868803 (OMIM: 609098) PREDICTED: F-box only ( 336) 909 205.7 1.2e-52
XP_011528408 (OMIM: 260300,605648) PREDICTED: F-bo ( 366) 145 40.8 0.0056
NP_001244919 (OMIM: 260300,605648) F-box only prot ( 408) 145 40.9 0.0061
NP_001028196 (OMIM: 260300,605648) F-box only prot ( 443) 145 40.9 0.0065
NP_036311 (OMIM: 260300,605648) F-box only protein ( 522) 145 41.0 0.0072
>>NP_478136 (OMIM: 606604) F-box only protein 32 isoform (355 aa)
initn: 2415 init1: 2415 opt: 2415 Z-score: 2822.9 bits: 530.8 E(85289): 1.7e-150
Smith-Waterman score: 2415; 100.0% identity (100.0% similar) in 355 aa overlap (1-355:1-355)
10 20 30 40 50 60
pF1KE2 MPFLGQDWRSPGQNWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 MPFLGQDWRSPGQNWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 SDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 SDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL
250 260 270 280 290 300
310 320 330 340 350
pF1KE2 VRCYPRKEQYGDTLQLCKHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 VRCYPRKEQYGDTLQLCKHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF
310 320 330 340 350
>>NP_904356 (OMIM: 609098) F-box only protein 25 isoform (358 aa)
initn: 1545 init1: 1388 opt: 1544 Z-score: 1806.7 bits: 342.8 E(85289): 6.8e-94
Smith-Waterman score: 1544; 61.4% identity (83.6% similar) in 360 aa overlap (1-355:1-358)
10 20 30 40 50
pF1KE2 MPFLGQDWRSPGQNWVKTADGWKRFLDEKSGSFVSDLSSYCNKE---VYNKEN--LFNSL
:::::::::::: .:.:: ::::: :. .. . .. :: . :.:. .::.
NP_904 MPFLGQDWRSPGWSWIKTEDGWKRC--ESCSQKLERENNRCNISHSIILNSEDGEIFNNE
10 20 30 40 50
60 70 80 90 100 110
pF1KE2 NYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILD
... :.:::::: . . :.:: :..:::::::: :::::::::::::::::::::.:: :
NP_904 EHEYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE2 SRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYT
:::::::.::.::::::::::::.::::..:::.:.: :::.:..: :::..::: : .
NP_904 IRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE2 SLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLN
.:: :.. :::::::::::.:. :.:::: :::::...:.:. . .:::..:::: . :
NP_904 TLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNN
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE2 IMQRLSDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKK
:. :.::: :...:::..: :..::::: ::::::::::.:.:. ..::::.::...::
NP_904 ILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKL
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE2 MYFKLVRCYPRKEQYGDTLQLCKHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF
::: : . :: ::::::::..:.:: :: :: . ::::: .:.:: . .::: ::.::::
NP_904 MYFALQKHYPAKEQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFTPVSPQHFIDLFKF
300 310 320 330 340 350
>>NP_680482 (OMIM: 606604) F-box only protein 32 isoform (210 aa)
initn: 1438 init1: 1438 opt: 1438 Z-score: 1686.0 bits: 319.7 E(85289): 3.6e-87
Smith-Waterman score: 1438; 100.0% identity (100.0% similar) in 210 aa overlap (146-355:1-210)
120 130 140 150 160 170
pF1KE2 SRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYT
::::::::::::::::::::::::::::::
NP_680 MNILEKVVLKVLEDQQNIRLIRELLQTLYT
10 20 30
180 190 200 210 220 230
pF1KE2 SLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_680 SLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLN
40 50 60 70 80 90
240 250 260 270 280 290
pF1KE2 IMQRLSDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_680 IMQRLSDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKK
100 110 120 130 140 150
300 310 320 330 340 350
pF1KE2 MYFKLVRCYPRKEQYGDTLQLCKHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_680 MYFKLVRCYPRKEQYGDTLQLCKHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF
160 170 180 190 200 210
>>XP_011533050 (OMIM: 609098) PREDICTED: F-box only prot (367 aa)
initn: 1411 init1: 1254 opt: 1410 Z-score: 1650.2 bits: 313.9 E(85289): 3.5e-85
Smith-Waterman score: 1516; 59.9% identity (81.6% similar) in 369 aa overlap (1-355:1-367)
10 20 30 40 50
pF1KE2 MPFLGQDWRSPGQNWVKTADGWKRFLDEKSGSFVSDLSSYCNKE---VYNKEN--LFNSL
:::::::::::: .:.:: ::::: :. .. . .. :: . :.:. .::.
XP_011 MPFLGQDWRSPGWSWIKTEDGWKRC--ESCSQKLERENNRCNISHSIILNSEDGEIFNNE
10 20 30 40 50
60 70 80 90 100 110
pF1KE2 NYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILD
... :.:::::: . . :.:: :..:::::::: :::::::::::::::::::::.:: :
XP_011 EHEYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE2 SRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYT
:::::::.::.::::::::::::.::::..:::.:.: :::.:..: :::..::: : .
XP_011 IRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE2 SLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLN
.:: :.. :::::::::::.:. :.:::: :::::...:.:. . .:::..:::: . :
XP_011 TLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNN
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE2 IMQRLSDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKK
:. :.::: :...:::..: :..::::: ::::::::::.:.:. ..::::.::...::
XP_011 ILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKL
240 250 260 270 280 290
300 310 320 330 340
pF1KE2 MYFKLVRCYPRKEQYGDTLQLCKHCHILSWKG---------TDHPCTANNPESCSVSLSP
::: : . :: ::::::::..:.:: :: :: . ::::: .:.:: . .::
XP_011 MYFALQKHYPAKEQYGDTLHFCRHCSILFWKDYHLALLFKDSGHPCTAADPDSCFTPVSP
300 310 320 330 340 350
350
pF1KE2 QDFINLFKF
: ::.::::
XP_011 QHFIDLFKF
360
>>XP_016868802 (OMIM: 609098) PREDICTED: F-box only prot (367 aa)
initn: 1411 init1: 1254 opt: 1410 Z-score: 1650.2 bits: 313.9 E(85289): 3.5e-85
Smith-Waterman score: 1516; 59.9% identity (81.6% similar) in 369 aa overlap (1-355:1-367)
10 20 30 40 50
pF1KE2 MPFLGQDWRSPGQNWVKTADGWKRFLDEKSGSFVSDLSSYCNKE---VYNKEN--LFNSL
:::::::::::: .:.:: ::::: :. .. . .. :: . :.:. .::.
XP_016 MPFLGQDWRSPGWSWIKTEDGWKRC--ESCSQKLERENNRCNISHSIILNSEDGEIFNNE
10 20 30 40 50
60 70 80 90 100 110
pF1KE2 NYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILD
... :.:::::: . . :.:: :..:::::::: :::::::::::::::::::::.:: :
XP_016 EHEYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE2 SRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYT
:::::::.::.::::::::::::.::::..:::.:.: :::.:..: :::..::: : .
XP_016 IRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE2 SLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLN
.:: :.. :::::::::::.:. :.:::: :::::...:.:. . .:::..:::: . :
XP_016 TLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNN
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE2 IMQRLSDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKK
:. :.::: :...:::..: :..::::: ::::::::::.:.:. ..::::.::...::
XP_016 ILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKL
240 250 260 270 280 290
300 310 320 330 340
pF1KE2 MYFKLVRCYPRKEQYGDTLQLCKHCHILSWKG---------TDHPCTANNPESCSVSLSP
::: : . :: ::::::::..:.:: :: :: . ::::: .:.:: . .::
XP_016 MYFALQKHYPAKEQYGDTLHFCRHCSILFWKDYHLALLFKDSGHPCTAADPDSCFTPVSP
300 310 320 330 340 350
350
pF1KE2 QDFINLFKF
: ::.::::
XP_016 QHFIDLFKF
360
>>NP_904357 (OMIM: 609098) F-box only protein 25 isoform (367 aa)
initn: 1411 init1: 1254 opt: 1410 Z-score: 1650.2 bits: 313.9 E(85289): 3.5e-85
Smith-Waterman score: 1516; 59.9% identity (81.6% similar) in 369 aa overlap (1-355:1-367)
10 20 30 40 50
pF1KE2 MPFLGQDWRSPGQNWVKTADGWKRFLDEKSGSFVSDLSSYCNKE---VYNKEN--LFNSL
:::::::::::: .:.:: ::::: :. .. . .. :: . :.:. .::.
NP_904 MPFLGQDWRSPGWSWIKTEDGWKRC--ESCSQKLERENNRCNISHSIILNSEDGEIFNNE
10 20 30 40 50
60 70 80 90 100 110
pF1KE2 NYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILD
... :.:::::: . . :.:: :..:::::::: :::::::::::::::::::::.:: :
NP_904 EHEYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE2 SRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYT
:::::::.::.::::::::::::.::::..:::.:.: :::.:..: :::..::: : .
NP_904 IRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE2 SLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLN
.:: :.. :::::::::::.:. :.:::: :::::...:.:. . .:::..:::: . :
NP_904 TLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNN
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE2 IMQRLSDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKK
:. :.::: :...:::..: :..::::: ::::::::::.:.:. ..::::.::...::
NP_904 ILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKL
240 250 260 270 280 290
300 310 320 330 340
pF1KE2 MYFKLVRCYPRKEQYGDTLQLCKHCHILSWKG---------TDHPCTANNPESCSVSLSP
::: : . :: ::::::::..:.:: :: :: . ::::: .:.:: . .::
NP_904 MYFALQKHYPAKEQYGDTLHFCRHCSILFWKDYHLALLFKDSGHPCTAADPDSCFTPVSP
300 310 320 330 340 350
350
pF1KE2 QDFINLFKF
: ::.::::
NP_904 QHFIDLFKF
360
>>NP_036305 (OMIM: 609098) F-box only protein 25 isoform (291 aa)
initn: 1221 init1: 1221 opt: 1221 Z-score: 1431.0 bits: 273.0 E(85289): 5.7e-73
Smith-Waterman score: 1221; 65.0% identity (87.5% similar) in 263 aa overlap (93-355:29-291)
70 80 90 100 110 120
pF1KE2 KRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFNYV
.:::::::::::::::::.:: : ::::::
NP_036 MEKYSIMKSMNMHRKKGKRTILEMTQILKRHGYCTLGEAFNRLDFSSAIQDIRRFNYV
10 20 30 40 50
130 140 150 160 170 180
pF1KE2 VRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTLVQ
:.::.::::::::::::.::::..:::.:.: :::.:..: :::..::: : ..:: :..
NP_036 VKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTLCILIR
60 70 80 90 100 110
190 200 210 220 230 240
pF1KE2 RVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRLSD
:::::::::::.:. :.:::: :::::...:.:. . .:::..:::: . ::. :.::
NP_036 GVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNILYRFSD
120 130 140 150 160 170
250 260 270 280 290 300
pF1KE2 GRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKLVR
: :...:::..: :..::::: ::::::::::.:.:. ..::::.::...:: ::: : .
NP_036 GWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMYFALQK
180 190 200 210 220 230
310 320 330 340 350
pF1KE2 CYPRKEQYGDTLQLCKHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF
:: ::::::::..:.:: :: :: . ::::: .:.:: . .::: ::.::::
NP_036 HYPAKEQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFTPVSPQHFIDLFKF
240 250 260 270 280 290
>>XP_011533051 (OMIM: 609098) PREDICTED: F-box only prot (300 aa)
initn: 1087 init1: 1087 opt: 1087 Z-score: 1274.5 bits: 244.1 E(85289): 3e-64
Smith-Waterman score: 1193; 62.9% identity (84.6% similar) in 272 aa overlap (93-355:29-300)
70 80 90 100 110 120
pF1KE2 KRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFNYV
.:::::::::::::::::.:: : ::::::
XP_011 MEKYSIMKSMNMHRKKGKRTILEMTQILKRHGYCTLGEAFNRLDFSSAIQDIRRFNYV
10 20 30 40 50
130 140 150 160 170 180
pF1KE2 VRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTLVQ
:.::.::::::::::::.::::..:::.:.: :::.:..: :::..::: : ..:: :..
XP_011 VKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTLCILIR
60 70 80 90 100 110
190 200 210 220 230 240
pF1KE2 RVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRLSD
:::::::::::.:. :.:::: :::::...:.:. . .:::..:::: . ::. :.::
XP_011 GVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNILYRFSD
120 130 140 150 160 170
250 260 270 280 290 300
pF1KE2 GRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKLVR
: :...:::..: :..::::: ::::::::::.:.:. ..::::.::...:: ::: : .
XP_011 GWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMYFALQK
180 190 200 210 220 230
310 320 330 340 350
pF1KE2 CYPRKEQYGDTLQLCKHCHILSWKG---------TDHPCTANNPESCSVSLSPQDFINLF
:: ::::::::..:.:: :: :: . ::::: .:.:: . .::: ::.::
XP_011 HYPAKEQYGDTLHFCRHCSILFWKDYHLALLFKDSGHPCTAADPDSCFTPVSPQHFIDLF
240 250 260 270 280 290
pF1KE2 KF
::
XP_011 KF
300
>>NP_001229392 (OMIM: 606604) F-box only protein 32 isof (262 aa)
initn: 990 init1: 990 opt: 990 Z-score: 1162.1 bits: 223.1 E(85289): 5.5e-58
Smith-Waterman score: 1640; 73.8% identity (73.8% similar) in 355 aa overlap (1-355:1-262)
10 20 30 40 50 60
pF1KE2 MPFLGQDWRSPGQNWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPFLGQDWRSPGQNWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL
::::
NP_001 YVVR--------------------------------------------------------
190 200 210 220 230 240
pF1KE2 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL
:::::::::::::::::::::::
NP_001 -------------------------------------PAFKGLTFTDLPLCLQLNIMQRL
130 140
250 260 270 280 290 300
pF1KE2 SDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL
150 160 170 180 190 200
310 320 330 340 350
pF1KE2 VRCYPRKEQYGDTLQLCKHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRCYPRKEQYGDTLQLCKHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF
210 220 230 240 250 260
>>XP_016868803 (OMIM: 609098) PREDICTED: F-box only prot (336 aa)
initn: 1209 init1: 898 opt: 909 Z-score: 1066.2 bits: 205.7 E(85289): 1.2e-52
Smith-Waterman score: 1256; 52.6% identity (73.7% similar) in 369 aa overlap (1-355:1-336)
10 20 30 40 50
pF1KE2 MPFLGQDWRSPGQNWVKTADGWKRFLDEKSGSFVSDLSSYCNKE---VYNKEN--LFNSL
:::::::::::: .:.:: ::::: :. .. . .. :: . :.:. .::.
XP_016 MPFLGQDWRSPGWSWIKTEDGWKRC--ESCSQKLERENNRCNISHSIILNSEDGEIFNNE
10 20 30 40 50
60 70 80 90 100 110
pF1KE2 NYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILD
... :.:::::: . . :.:: :..:::::::: ::::
XP_016 EHEYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKE----------------------
60 70 80 90
120 130 140 150 160 170
pF1KE2 SRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYT
::.::::::::::::.::::..:::.:.: :::.:..: :::..::: : .
XP_016 ---------LLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSS
100 110 120 130 140
180 190 200 210 220 230
pF1KE2 SLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLN
.:: :.. :::::::::::.:. :.:::: :::::...:.:. . .:::..:::: . :
XP_016 TLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNN
150 160 170 180 190 200
240 250 260 270 280 290
pF1KE2 IMQRLSDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKK
:. :.::: :...:::..: :..::::: ::::::::::.:.:. ..::::.::...::
XP_016 ILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKL
210 220 230 240 250 260
300 310 320 330 340
pF1KE2 MYFKLVRCYPRKEQYGDTLQLCKHCHILSWKG---------TDHPCTANNPESCSVSLSP
::: : . :: ::::::::..:.:: :: :: . ::::: .:.:: . .::
XP_016 MYFALQKHYPAKEQYGDTLHFCRHCSILFWKDYHLALLFKDSGHPCTAADPDSCFTPVSP
270 280 290 300 310 320
350
pF1KE2 QDFINLFKF
: ::.::::
XP_016 QHFIDLFKF
330
355 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 15:53:37 2016 done: Sun Nov 6 15:53:38 2016
Total Scan time: 7.280 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]