FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2332, 551 aa
  1>>>pF1KE2332 551 - 551 aa - 551 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0135+/-0.00149; mu= 0.3630+/- 0.085
 mean_var=439.1031+/-102.166, 0's: 0 Z-trim(105.8): 468  B-trim: 210 in 1/52
 Lambda= 0.061206
 statistics sampled from 8042 (8618) to 8042 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.265), width:  16
 Scan time:  3.270

The best scores are:                                      opt bits E(32554)
CCDS1786.1 EIF2AK2 gene_id:5610|Hs108|chr2         ( 551) 3576 331.7 1.4e-90
CCDS46259.1 EIF2AK2 gene_id:5610|Hs108|chr2        ( 510) 1664 162.8 9.1e-40


>>CCDS1786.1 EIF2AK2 gene_id:5610|Hs108|chr2              (551 aa)
 initn: 3576 init1: 3576 opt: 3576  Z-score: 1739.6  bits: 331.7 E(32554): 1.4e-90
Smith-Waterman score: 3576; 100.0% identity (100.0% similar) in 551 aa overlap (1-551:1-551)

               10        20        30        40        50        60
pF1KE2 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
              490       500       510       520       530       540

              550 
pF1KE2 KSPEKNERHTC
       :::::::::::
CCDS17 KSPEKNERHTC
              550 

>>CCDS46259.1 EIF2AK2 gene_id:5610|Hs108|chr2             (510 aa)
 initn: 1703 init1: 1664 opt: 1664  Z-score: 827.5  bits: 162.8 E(32554): 9.1e-40
Smith-Waterman score: 3211; 92.6% identity (92.6% similar) in 551 aa overlap (1-551:1-510)

               10        20        30        40        50        60
pF1KE2 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
       ::::::::::::::::::::::                                      
CCDS46 RSLAPRFDLPDMKETKYTVDKR--------------------------------------
              250       260                                        

              310       320       330       340       350       360
pF1KE2 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ---KAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
               270       280       290       300       310         

              370       380       390       400       410       420
pF1KE2 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
     320       330       340       350       360       370         

              430       440       450       460       470       480
pF1KE2 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
     380       390       400       410       420       430         

              490       500       510       520       530       540
pF1KE2 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
     440       450       460       470       480       490         

              550 
pF1KE2 KSPEKNERHTC
       :::::::::::
CCDS46 KSPEKNERHTC
     500       510




551 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:33:03 2016 done: Sun Nov  6 18:33:04 2016
 Total Scan time:  3.270 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]