Result of FASTA (ccds) for
pF1KE2365
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2365, 243 aa
1>>>pF1KE2365 243 - 243 aa - 243 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4878+/-0.000746; mu= 13.8088+/- 0.045
mean_var=80.0691+/-15.947, 0's: 0 Z-trim(109.5): 29 B-trim: 3 in 1/51
Lambda= 0.143332
statistics sampled from 10918 (10942) to 10918 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.336), width: 16
Scan time: 2.350
The best scores are: opt bits E(32554)
CCDS1995.1 CD8B gene_id:926|Hs108|chr2 ( 243) 1619 343.9 5.6e-95
CCDS1997.1 CD8B gene_id:926|Hs108|chr2 ( 210) 1367 291.8 2.4e-79
CCDS42708.1 CD8B gene_id:926|Hs108|chr2 ( 221) 1367 291.8 2.5e-79
CCDS54376.1 CD8B gene_id:926|Hs108|chr2 ( 198) 1089 234.3 4.6e-62
CCDS1994.1 CD8B gene_id:926|Hs108|chr2 ( 213) 1089 234.3 4.9e-62
>>CCDS1995.1 CD8B gene_id:926|Hs108|chr2 (243 aa)
initn: 1619 init1: 1619 opt: 1619 Z-score: 1818.7 bits: 343.9 E(32554): 5.6e-95
Smith-Waterman score: 1619; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KE2 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
190 200 210 220 230 240
pF1KE2 LKT
:::
CCDS19 LKT
>>CCDS1997.1 CD8B gene_id:926|Hs108|chr2 (210 aa)
initn: 1367 init1: 1367 opt: 1367 Z-score: 1538.0 bits: 291.8 E(32554): 2.4e-79
Smith-Waterman score: 1367; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)
10 20 30 40 50 60
pF1KE2 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
:::::::::::::::::::::::::::
CCDS19 LVLLVSLGVAIHLCCRRRRARLRFMKQFYK
190 200 210
>>CCDS42708.1 CD8B gene_id:926|Hs108|chr2 (221 aa)
initn: 1367 init1: 1367 opt: 1367 Z-score: 1537.7 bits: 291.8 E(32554): 2.5e-79
Smith-Waterman score: 1367; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)
10 20 30 40 50 60
pF1KE2 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
:::::::::::::::::::::::::::
CCDS42 LVLLVSLGVAIHLCCRRRRARLRFMKQLRLHPLEKCSRMDY
190 200 210 220
>>CCDS54376.1 CD8B gene_id:926|Hs108|chr2 (198 aa)
initn: 1089 init1: 1089 opt: 1089 Z-score: 1227.7 bits: 234.3 E(32554): 4.6e-62
Smith-Waterman score: 1089; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165)
10 20 30 40 50 60
pF1KE2 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
:::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGLKGKVYQEPLSPNAC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
CCDS54 MDTTAILQPHRSCLTHGS
190
>>CCDS1994.1 CD8B gene_id:926|Hs108|chr2 (213 aa)
initn: 1407 init1: 1089 opt: 1089 Z-score: 1227.2 bits: 234.3 E(32554): 4.9e-62
Smith-Waterman score: 1351; 87.7% identity (87.7% similar) in 243 aa overlap (1-243:1-213)
10 20 30 40 50 60
pF1KE2 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
:::::::::::::::::::::::::::::::::::::::::::::
CCDS19 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKG---------------
130 140 150 160
190 200 210 220 230 240
pF1KE2 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
:::::::::::::::::::::::::::::::::::::::::::::
CCDS19 ---------------RRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
170 180 190 200 210
pF1KE2 LKT
:::
CCDS19 LKT
243 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:23:56 2016 done: Sun Nov 6 18:23:57 2016
Total Scan time: 2.350 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]