Result of FASTA (omim) for
pF1KE2365
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2365, 243 aa
1>>>pF1KE2365 243 - 243 aa - 243 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5977+/-0.000338; mu= 13.2675+/- 0.021
mean_var=84.7374+/-17.082, 0's: 0 Z-trim(115.9): 55 B-trim: 1498 in 1/55
Lambda= 0.139327
statistics sampled from 26621 (26676) to 26621 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.313), width: 16
Scan time: 7.060
The best scores are: opt bits E(85289)
NP_757362 (OMIM: 186730) T-cell surface glycoprote ( 243) 1619 334.9 7.5e-92
NP_004922 (OMIM: 186730) T-cell surface glycoprote ( 210) 1367 284.2 1.2e-76
NP_742099 (OMIM: 186730) T-cell surface glycoprote ( 221) 1367 284.3 1.2e-76
XP_011531466 (OMIM: 186730) PREDICTED: T-cell surf ( 246) 1367 284.3 1.3e-76
NP_001171571 (OMIM: 186730) T-cell surface glycopr ( 198) 1089 228.3 7.5e-60
NP_742100 (OMIM: 186730) T-cell surface glycoprote ( 213) 1089 228.4 7.9e-60
>>NP_757362 (OMIM: 186730) T-cell surface glycoprotein C (243 aa)
initn: 1619 init1: 1619 opt: 1619 Z-score: 1770.0 bits: 334.9 E(85289): 7.5e-92
Smith-Waterman score: 1619; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KE2 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_757 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_757 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_757 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_757 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
190 200 210 220 230 240
pF1KE2 LKT
:::
NP_757 LKT
>>NP_004922 (OMIM: 186730) T-cell surface glycoprotein C (210 aa)
initn: 1367 init1: 1367 opt: 1367 Z-score: 1497.1 bits: 284.2 E(85289): 1.2e-76
Smith-Waterman score: 1367; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)
10 20 30 40 50 60
pF1KE2 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
:::::::::::::::::::::::::::
NP_004 LVLLVSLGVAIHLCCRRRRARLRFMKQFYK
190 200 210
>>NP_742099 (OMIM: 186730) T-cell surface glycoprotein C (221 aa)
initn: 1367 init1: 1367 opt: 1367 Z-score: 1496.8 bits: 284.3 E(85289): 1.2e-76
Smith-Waterman score: 1367; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)
10 20 30 40 50 60
pF1KE2 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_742 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_742 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_742 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
:::::::::::::::::::::::::::
NP_742 LVLLVSLGVAIHLCCRRRRARLRFMKQLRLHPLEKCSRMDY
190 200 210 220
>>XP_011531466 (OMIM: 186730) PREDICTED: T-cell surface (246 aa)
initn: 1367 init1: 1367 opt: 1367 Z-score: 1496.2 bits: 284.3 E(85289): 1.3e-76
Smith-Waterman score: 1367; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)
10 20 30 40 50 60
pF1KE2 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
:::::::::::::::::::::::::::
XP_011 LVLLVSLGVAIHLCCRRRRARLRFMKQKFNIVCLKISGFTTCCCFQILQMSREYGFGVLL
190 200 210 220 230 240
>>NP_001171571 (OMIM: 186730) T-cell surface glycoprotei (198 aa)
initn: 1089 init1: 1089 opt: 1089 Z-score: 1195.5 bits: 228.3 E(85289): 7.5e-60
Smith-Waterman score: 1089; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165)
10 20 30 40 50 60
pF1KE2 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGLKGKVYQEPLSPNAC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
NP_001 MDTTAILQPHRSCLTHGS
190
>>NP_742100 (OMIM: 186730) T-cell surface glycoprotein C (213 aa)
initn: 1407 init1: 1089 opt: 1089 Z-score: 1195.1 bits: 228.4 E(85289): 7.9e-60
Smith-Waterman score: 1351; 87.7% identity (87.7% similar) in 243 aa overlap (1-243:1-213)
10 20 30 40 50 60
pF1KE2 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_742 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_742 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
:::::::::::::::::::::::::::::::::::::::::::::
NP_742 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKG---------------
130 140 150 160
190 200 210 220 230 240
pF1KE2 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
:::::::::::::::::::::::::::::::::::::::::::::
NP_742 ---------------RRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
170 180 190 200 210
pF1KE2 LKT
:::
NP_742 LKT
243 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:23:57 2016 done: Sun Nov 6 18:23:58 2016
Total Scan time: 7.060 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]