FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2427, 631 aa
  1>>>pF1KE2427 631 - 631 aa - 631 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2243+/-0.00139; mu= 14.0978+/- 0.084
 mean_var=69.1827+/-13.499, 0's: 0 Z-trim(99.5): 38  B-trim: 0 in 0/51
 Lambda= 0.154197
 statistics sampled from 5764 (5768) to 5764 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.519), E-opt: 0.2 (0.177), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS13291.1 RPN2 gene_id:6185|Hs108|chr20          ( 631) 3956 889.9       0
CCDS46599.1 RPN2 gene_id:6185|Hs108|chr20          ( 615) 3311 746.4 2.5e-215


>>CCDS13291.1 RPN2 gene_id:6185|Hs108|chr20               (631 aa)
 initn: 3956 init1: 3956 opt: 3956  Z-score: 4754.5  bits: 889.9 E(32554):    0
Smith-Waterman score: 3956; 100.0% identity (100.0% similar) in 631 aa overlap (1-631:1-631)

               10        20        30        40        50        60
pF1KE2 MAPPGSSTVFLLALTIIASTWALTPTHYLTKHDVERLKASLDRPFTNLESAFYSIVGLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAPPGSSTVFLLALTIIASTWALTPTHYLTKHDVERLKASLDRPFTNLESAFYSIVGLSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LGAQVPDAKKACTYIRSNLDPSNVDSLFYAAQASQALSGCEISISNETKDLLLAAVSEDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LGAQVPDAKKACTYIRSNLDPSNVDSLFYAAQASQALSGCEISISNETKDLLLAAVSEDS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SVTQIYHAVAALSGFGLPLASQEALSALTARLSKEETVLATVQALQTASHLSQQADLRSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SVTQIYHAVAALSGFGLPLASQEALSALTARLSKEETVLATVQALQTASHLSQQADLRSI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNAI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 FSKKNFESLSEAFSVASAAAVLSHNRYHVPVVVVPEGSASDTHEQAILRLQVTNVLSQPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FSKKNFESLSEAFSVASAAAVLSHNRYHVPVVVVPEGSASDTHEQAILRLQVTNVLSQPL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFMNVKFSSGYYDFLVEVEGDNRYIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFMNVKFSSGYYDFLVEVEGDNRYIA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 NTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGTFIADSHQNFALFFQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGTFIADSHQNFALFFQL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 VDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDNKNVYKFELDTSERKIEFDSASGTYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDNKNVYKFELDTSERKIEFDSASGTYT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 LYLIIGDATLKNPILWNVADVVIKFPEEEAPSTVLSQNLFTPKQEIQHLFREPEKRPPTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LYLIIGDATLKNPILWNVADVVIKFPEEEAPSTVLSQNLFTPKQEIQHLFREPEKRPPTV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 VSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF
              550       560       570       580       590       600

              610       620       630 
pF1KE2 QTLKYLAILGSVTFLAGNRMLAQQAVKRTAH
       :::::::::::::::::::::::::::::::
CCDS13 QTLKYLAILGSVTFLAGNRMLAQQAVKRTAH
              610       620       630 

>>CCDS46599.1 RPN2 gene_id:6185|Hs108|chr20               (615 aa)
 initn: 3715 init1: 3291 opt: 3311  Z-score: 3979.2  bits: 746.4 E(32554): 2.5e-215
Smith-Waterman score: 3655; 94.8% identity (94.8% similar) in 630 aa overlap (1-630:1-598)

               10        20        30        40        50        60
pF1KE2 MAPPGSSTVFLLALTIIASTWALTPTHYLTKHDVERLKASLDRPFTNLESAFYSIVGLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAPPGSSTVFLLALTIIASTWALTPTHYLTKHDVERLKASLDRPFTNLESAFYSIVGLSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LGAQVPDAKKACTYIRSNLDPSNVDSLFYAAQASQALSGCEISISNETKDLLLAAVSEDS
       :::::::::                                :::::::::::::::::::
CCDS46 LGAQVPDAK--------------------------------ISISNETKDLLLAAVSEDS
                                               70        80        

              130       140       150       160       170       180
pF1KE2 SVTQIYHAVAALSGFGLPLASQEALSALTARLSKEETVLATVQALQTASHLSQQADLRSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SVTQIYHAVAALSGFGLPLASQEALSALTARLSKEETVLATVQALQTASHLSQQADLRSI
       90       100       110       120       130       140        

              190       200       210       220       230       240
pF1KE2 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNAI
      150       160       170       180       190       200        

              250       260       270       280       290       300
pF1KE2 FSKKNFESLSEAFSVASAAAVLSHNRYHVPVVVVPEGSASDTHEQAILRLQVTNVLSQPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FSKKNFESLSEAFSVASAAAVLSHNRYHVPVVVVPEGSASDTHEQAILRLQVTNVLSQPL
      210       220       230       240       250       260        

              310       320       330       340       350       360
pF1KE2 TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFMNVKFSSGYYDFLVEVEGDNRYIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFMNVKFSSGYYDFLVEVEGDNRYIA
      270       280       290       300       310       320        

              370       380       390       400       410       420
pF1KE2 NTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGTFIADSHQNFALFFQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGTFIADSHQNFALFFQL
      330       340       350       360       370       380        

              430       440       450       460       470       480
pF1KE2 VDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDNKNVYKFELDTSERKIEFDSASGTYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDNKNVYKFELDTSERKIEFDSASGTYT
      390       400       410       420       430       440        

              490       500       510       520       530       540
pF1KE2 LYLIIGDATLKNPILWNVADVVIKFPEEEAPSTVLSQNLFTPKQEIQHLFREPEKRPPTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LYLIIGDATLKNPILWNVADVVIKFPEEEAPSTVLSQNLFTPKQEIQHLFREPEKRPPTV
      450       460       470       480       490       500        

              550       560       570       580       590       600
pF1KE2 VSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF
      510       520       530       540       550       560        

              610       620       630                 
pF1KE2 QTLKYLAILGSVTFLAGNRMLAQQAVKRTAH                
       :::::::::::::::::::::::::::: :                 
CCDS46 QTLKYLAILGSVTFLAGNRMLAQQAVKRIAAEQSSRLAKYRTLRTAH
      570       580       590       600       610     




631 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 19:51:58 2016 done: Mon Nov  7 19:51:59 2016
 Total Scan time:  2.830 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]