FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2463, 213 aa
  1>>>pF1KE2463 213 - 213 aa - 213 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4806+/-0.000375; mu= 13.2124+/- 0.023
 mean_var=72.4314+/-14.590, 0's: 0 Z-trim(112.5): 30  B-trim: 140 in 1/55
 Lambda= 0.150699
 statistics sampled from 21380 (21404) to 21380 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.251), width:  16
 Scan time:  5.470

The best scores are:                                      opt bits E(85289)
NP_001688 (OMIM: 600828) ATP synthase subunit O, m ( 213) 1310 293.8 1.4e-79


>>NP_001688 (OMIM: 600828) ATP synthase subunit O, mitoc  (213 aa)
 initn: 1310 init1: 1310 opt: 1310  Z-score: 1550.0  bits: 293.8 E(85289): 1.4e-79
Smith-Waterman score: 1310; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE2 MAAPAVSGLSRQVRCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAPAVSGLSRQVRCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 ELLRVAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELLRVAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 TQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPS
              130       140       150       160       170       180

              190       200       210   
pF1KE2 ILGGMIVRIGEKYVDMSVKTKIQKLGRAMREIV
       :::::::::::::::::::::::::::::::::
NP_001 ILGGMIVRIGEKYVDMSVKTKIQKLGRAMREIV
              190       200       210   




213 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 20:18:17 2016 done: Mon Nov  7 20:18:18 2016
 Total Scan time:  5.470 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]