FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2494, 390 aa 1>>>pF1KE2494 390 - 390 aa - 390 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.2191+/-0.000897; mu= 12.4964+/- 0.054 mean_var=84.5458+/-16.781, 0's: 0 Z-trim(107.4): 20 B-trim: 0 in 0/51 Lambda= 0.139485 statistics sampled from 9523 (9534) to 9523 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.293), width: 16 Scan time: 2.010 The best scores are: opt bits E(32554) CCDS1198.2 CASQ1 gene_id:844|Hs108|chr1 ( 396) 2577 528.4 4.3e-150 CCDS884.1 CASQ2 gene_id:845|Hs108|chr1 ( 399) 1797 371.5 7.7e-103 >>CCDS1198.2 CASQ1 gene_id:844|Hs108|chr1 (396 aa) initn: 2577 init1: 2577 opt: 2577 Z-score: 2808.2 bits: 528.4 E(32554): 4.3e-150 Smith-Waterman score: 2577; 100.0% identity (100.0% similar) in 390 aa overlap (1-390:7-396) 10 20 30 40 50 pF1KE2 MGPRAVPGLRLALLLLLVLGTPKSGVQGQEGLDFPEYDGVDRVINVNAKNYKNV :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MSATDRMGPRAVPGLRLALLLLLVLGTPKSGVQGQEGLDFPEYDGVDRVINVNAKNYKNV 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE2 FKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 FKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKK 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE2 LGLTEVDSMYVFKGDEVIEYDGEFSADTIVEFLLDVLEDPVELIEGERELQAFENIEDEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LGLTEVDSMYVFKGDEVIEYDGEFSADTIVEFLLDVLEDPVELIEGERELQAFENIEDEI 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE2 KLIGYFKSKDSEHYKAFEDAAEEFHPYIPFFATFDSKVAKKLTLKLNEIDFYEAFMEEPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 KLIGYFKSKDSEHYKAFEDAAEEFHPYIPFFATFDSKVAKKLTLKLNEIDFYEAFMEEPV 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE2 TIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGFEFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGFEFL 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE2 ETLKAVAQDNTENPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 ETLKAVAQDNTENPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWME 310 320 330 340 350 360 360 370 380 390 pF1KE2 MDDEEDLPSAEELEDWLEDVLEGEINTEDDDDDDDD :::::::::::::::::::::::::::::::::::: CCDS11 MDDEEDLPSAEELEDWLEDVLEGEINTEDDDDDDDD 370 380 390 >>CCDS884.1 CASQ2 gene_id:845|Hs108|chr1 (399 aa) initn: 1797 init1: 1797 opt: 1797 Z-score: 1959.8 bits: 371.5 E(32554): 7.7e-103 Smith-Waterman score: 1797; 68.4% identity (91.3% similar) in 367 aa overlap (24-390:15-381) 10 20 30 40 50 60 pF1KE2 MGPRAVPGLRLALLLLLVLGTPKSGVQGQEGLDFPEYDGVDRVINVNAKNYKNVFKKYEV :. ...:::.:: ::: :::.... ::.:.:.:::.. CCDS88 MKRTHLFIVGIYFLSSCRAEEGLNFPTYDGKDRVVSLSEKNFKQVLKKYDL 10 20 30 40 50 70 80 90 100 110 120 pF1KE2 LALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEV : : :::: .::..:.::...:..:::.::::: :..:: .::..:.: .:::::. : CCDS88 LCLYYHEPVSSDKVTQKQFQLKEIVLELVAQVLEHKAIGFVMVDAKKEAKLAKKLGFDEE 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE2 DSMYVFKGDEVIEYDGEFSADTIVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYF :.:..:::..::.::::.::..::::::..:::::.: .. :.:::: ::: :::::.: CCDS88 GSLYILKGDRTIEFDGEFAADVLVEFLLDLIEDPVEIISSKLEVQAFERIEDYIKLIGFF 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE2 KSKDSEHYKAFEDAAEEFHPYIPFFATFDSKVAKKLTLKLNEIDFYEAFMEEPVTIPDKP ::.:::.:::::.:::.:.::: ::::::. :::::.::.::.:::: ::.::..::.:: CCDS88 KSEDSEYYKAFEEAAEHFQPYIKFFATFDKGVAKKLSLKMNEVDFYEPFMDEPIAIPNKP 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE2 NSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGFEFLETLKAV .:::.:.::.::.: :::.:.:: :.::::::..:::::::::..::::.:::: :: : CCDS88 YTEEELVEFVKEHQRPTLRRLRPEEMFETWEDDLNGIHIVAFAEKSDPDGYEFLEILKQV 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE2 AQDNTENPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEMDDEED :.:::.::::::.::::::::::: :::::: ::: :::::::::::::::::. :..: CCDS88 ARDNTDNPDLSILWIDPDDFPLLVAYWEKTFKIDLFRPQIGVVNVTDADSVWMEIPDDDD 300 310 320 330 340 350 370 380 390 pF1KE2 LPSAEELEDWLEDVLEGEINTEDDDDDDDD ::.:::::::.:::: :.:::::::.:::: CCDS88 LPTAEELEDWIEDVLSGKINTEDDDEDDDDDDNSDEEDNDDSDDDDDE 360 370 380 390 390 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 20:57:09 2016 done: Mon Nov 7 20:57:09 2016 Total Scan time: 2.010 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]