FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2548, 940 aa
  1>>>pF1KE2548 940 - 940 aa - 940 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3930+/-0.000981; mu= 8.6865+/- 0.060
 mean_var=195.9906+/-38.417, 0's: 0 Z-trim(112.2): 19  B-trim: 53 in 1/51
 Lambda= 0.091613
 statistics sampled from 12997 (13004) to 12997 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.399), width:  16
 Scan time:  4.450

The best scores are:                                      opt bits E(32554)
CCDS46763.1 XPC gene_id:7508|Hs108|chr3            ( 940) 6278 842.9       0


>>CCDS46763.1 XPC gene_id:7508|Hs108|chr3                 (940 aa)
 initn: 6310 init1: 6278 opt: 6278  Z-score: 4494.3  bits: 842.9 E(32554):    0
Smith-Waterman score: 6278; 99.9% identity (100.0% similar) in 940 aa overlap (1-940:1-940)

               10        20        30        40        50        60
pF1KE2 MARKRAAGGEPRGRELRSQKSKAKSKARREEEEEDAFEDEKPPKKSLLSKVSQGKRKRGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MARKRAAGGEPRGRELRSQKSKAKSKARREEEEEDAFEDEKPPKKSLLSKVSQGKRKRGC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 SHPGGSADGPAKKKVAKVTVKSENLKVIKDEALSDGDDLRDFPSDLKKAHHLKRGATMNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SHPGGSADGPAKKKVAKVTVKSENLKVIKDEALSDGDDLRDFPSDLKKAHHLKRGATMNE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 DSNEEEEESENDWEEVEELSEPVLGDVRESTAFSRSLLPVKPVEIEIETPEQAKTRERSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DSNEEEEESENDWEEVEELSEPVLGDVRESTAFSRSLLPVKPVEIEIETPEQAKTRERSE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 KIKLEFETYLRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNNICSQPDLHAIGLSIIPAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KIKLEFETYLRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNNICSQPDLHAIGLSIIPAR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 FTRVLPRDVDTYYLSNLVKWFIGTFTVNAELSASEQDNLQTTLERRFAIYSARDDEELVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FTRVLPRDVDTYYLSNLVKWFIGTFTVNAELSASEQDNLQTTLERRFAIYSARDDEELVH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 IFLLILRALQLLTRLVLSLQPIPLKSATAKGKKPSKERLTADPGGSSETSSQVLENHTKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IFLLILRALQLLTRLVLSLQPIPLKSATAKGKKPSKERLTADPGGSSETSSQVLENHTKP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 KTSKGTKQEETFAKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKATQRRPHGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KTSKGTKQEETFAKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKATQRRPHGR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 ERRVASRVSYKEESGSDEAGSGSDFELSSGEASDPSDEDSEPGPPKQRKAPAPQRTKAGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ERRVASRVSYKEESGSDEAGSGSDFELSSGEASDPSDEDSEPGPPKQRKAPAPQRTKAGS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 KSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQWLEVFCEQEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQWLEVFCEQEE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 KWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE2 EWWAETLRPYQSPFMDREKKEDLEFQAKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EWWAETLRPYQSPFMDREKKEDLEFQAKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIY
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE2 PETAAILGYCRGEAVYSRDCVHTLHSRDTWLKKARVVRLGEVPYKMVKGFSNRARKARLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PETAAILGYCRGEAVYSRDCVHTLHSRDTWLKKARVVRLGEVPYKMVKGFSNRARKARLA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE2 EPQLREENDLGLFGYWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNLPNLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EPQLREENDLGLFGYWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNLPNLH
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE2 RVARKLDIDCVQAITGFDFHGGYSHPVTDGYIVCEEFKDVLLTAWENEQAVIERKEKEKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RVARKLDIDCVQAITGFDFHGGYSHPVTDGYIVCEEFKDVLLTAWENEQAVIERKEKEKK
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE2 EKRALGNWKLLAKGLLIRERLKRRYGPKSEAAAPHTDAGGGLSSDEEEGTSSQAEAARIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EKRALGNWKLLAKGLLIRERLKRRYGPKSEAAAPHTDAGGGLSSDEEEGTSSQAEAARIL
              850       860       870       880       890       900

              910       920       930       940
pF1KE2 AASWPQNREDEEKQKLKGGPKKTKREKKAAASHLFPFEKL
       ::::::::::::::::::::::::::::::::::::::.:
CCDS46 AASWPQNREDEEKQKLKGGPKKTKREKKAAASHLFPFEQL
              910       920       930       940




940 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 03:54:53 2016 done: Tue Nov  8 03:54:53 2016
 Total Scan time:  4.450 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]